Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Reverse (-)

11469367 .. 11481968

Gene Structure 12602 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0074100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAATCACTCAAAGGAGGAGGAAAACTACATTGAAATGAGCTCTCACCAAGATATAGATCATGCTGTCGAAAATGCTAACGTGCCAGCCGGAGAAGTAAATGTAACAAAGAAGAAATGGGAAAGAATGCTGCTTTCAGTTTCATTTTGGAATAAGATATCTGTGCTTGCATGTATGATTGCGGTCTCAATCGATCCTTTGTTTTTTTACATTGCATTTCTTGATCGTGATAAAGTGTGCCTCGGAACGGACAAAAGGCTGAGGACTGTAGTCCTCATTACGCGATCACTCACAGATATCACGTTCCTATTTCATATTGTATATCAACTTCGTGAAGCTGTGAAAGCAGTGGCCTCTGTGTCCAAGCCCAAGCTGGTACAGAGAGGCAACTCAAAACTCTTCAACTGGTTTGGACACGCTAAAGAAATAACTAAGAAGTTGTCATGGAGCTCTTTCCTAACTGACATTTTCGCTATTCTTCCAATTCCTCACGTGCTAATATTAGCTCTCTTTTATGCTCCCAATTATGGATTTTCAGAGAACAAAATGACTTTGAATTACATGCTTCTCGCGCAATATGTTCCAAGAATGTATCGGATCTTCATCTCGTCTAAGCTGTTTAGAAAAAATAGTAACATGTGGGTCAAAGCTGCTTTCTATTTTTTTATGTACATCCTCTCAAGTCATGTAATTGGAGCCTTTTGGTACTTCAGTTCAATTCAAGTGGAAACAATATGTTGGTTTACAAGCCTTAAGGAGTTCAACGAAACTGGCTCTTTTCTTTGTGATGACCCTCATCCTCTGGTTCAACACTCCAAAGATTTGATAGCCTATTATTGCCCTGTGTATCCATTAAATGCTTCAGTATATAACTTTGGATCATTCGGCGAGACTTTGTCTTCTGGTTACACACAAAAACTAAAGTTTCGAGAAAAGTTATTTTACTTTATGCGGTGGGGTCTTAAAAATTTGAGTAATTATGGTACAAACATCAATACAAGTGAATTCATATGGGAAAATTGCTTTGCAATTCTTGTTTCTGGTATTGGCTTGGTACTGTTTGCTTTACTGATTGGAAATATGCAGGTTAGTAATTCAATTTCCTTATGTTCACTTCTTGTCATTAGTTTTAACTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

379

Amino Acids

43.77

Weight (kDa)

8.97

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1075
AccII	CGCG	2 cut(s)	283, 572
AciI	CCGC	2 cut(s)	182, 952
AclWI	GGATC	3 cut(s)	188, 605, 886
AcsI	RAATTY	2 cut(s)	967, 1004
AcuI	CTGAAG	2 cut(s)	694, 846
AcvI	CACGTG	1 cut(s)	493
AfaI	GTAC	5 cut(s)	378, 671, 707, 985, 1056
AfiI	CCNNNNNNNGG	2 cut(s)	247, 527
AflII	CTTAAG	1 cut(s)	752
AflIII	ACRYGT	1 cut(s)	636
AgsI	TTSAA	8 cut(s)	35, 403, 556, 717, 722, 763, 809, 1098
AluBI	AGCT	7 cut(s)	42, 338, 373, 450, 506, 616, 650
AluI	AGCT	7 cut(s)	42, 338, 373, 450, 506, 616, 650
Alw21I	GWGCWC	2 cut(s)	44, 452
Alw26I	GTCTC	2 cut(s)	190, 884
AlwI	GGATC	3 cut(s)	188, 605, 886
AoxI	GGCC	1 cut(s)	351
ApeKI	GCWGC	2 cut(s)	130, 650
ApoI	RAATTY	2 cut(s)	967, 1004
AspLEI	GCGC	1 cut(s)	574
AsuHPI	GGTGA	1 cut(s)	38
BaeI	ACNNNNGTAYC	2 cut(s)	697, 730
BanII	GRGCYC	2 cut(s)	44, 452
BarI	GAAGNNNNNNTAC	4 cut(s)	312, 344, 584, 616
BbrPI	CACGTG	1 cut(s)	493
BbsI	GAAGAC	1 cut(s)	891
Bbv12I	GWGCWC	2 cut(s)	44, 452
BbvCI	CCTCAGC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	117, 637
BciVI	GTATCC	1 cut(s)	858
BcoDI	GTCTC	2 cut(s)	190, 884
BfmI	CTRYAG	1 cut(s)	267
BfrI	CTTAAG	1 cut(s)	752
BfuAI	ACCTGC	1 cut(s)	1075
BfuI	GTATCC	1 cut(s)	858
BisI	GCNGC	2 cut(s)	131, 651
BlsI	GCNGC	2 cut(s)	132, 652
BmiI	GGNNCC	1 cut(s)	697
BoxI	GACNNNNGTC	1 cut(s)	269
BpiI	GAAGAC	1 cut(s)	891
Bpu10I	CCTNAGC	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	664
Bsa29I	ATCGAT	1 cut(s)	192
BsaAI	YACGTR	1 cut(s)	493
BsaBI	GATNNNNATC	2 cut(s)	57, 602
BsaI	GGTCTC	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	2 cut(s)	247, 527
Bse1I	ACTGG	2 cut(s)	410, 775
Bse3DI	GCAATG	1 cut(s)	210
Bse8I	GATNNNNATC	2 cut(s)	57, 602
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	2 cut(s)	672, 796
BseJI	GATNNNNATC	2 cut(s)	57, 602
BseLI	CCNNNNNNNGG	2 cut(s)	247, 527
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	2 cut(s)	410, 775
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	117, 637
Bsh1236I	CGCG	2 cut(s)	283, 572
BshFI	GGCC	1 cut(s)	353
BshVI	ATCGAT	1 cut(s)	192
BsiHKAI	GWGCWC	2 cut(s)	44, 452
BsiSI	CCGG	1 cut(s)	90
BslI	CCNNNNNNNGG	2 cut(s)	247, 527
BsmAI	GTCTC	2 cut(s)	190, 884
BsmI	GAATGC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	353
Bso31I	GGTCTC	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	44, 452
Bsp1407I	TGTACA	1 cut(s)	669
Bsp143I	GATC	6 cut(s)	58, 193, 223, 284, 597, 878
BspACI	CCGC	2 cut(s)	182, 952
BspANI	GGCC	1 cut(s)	353
BspCNI	CTCAG	1 cut(s)	252
BspDI	ATCGAT	1 cut(s)	192
BspFNI	CGCG	2 cut(s)	283, 572
BspLI	GGNNCC	1 cut(s)	697
BspMI	ACCTGC	1 cut(s)	1075
BspPI	GGATC	3 cut(s)	188, 605, 886
BspTI	CTTAAG	1 cut(s)	752
BspTNI	GGTCTC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	210
BsrGI	TGTACA	1 cut(s)	669
BsrI	ACTGG	2 cut(s)	410, 775
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	6 cut(s)	58, 193, 223, 284, 597, 878
Bst4CI	ACNGT	2 cut(s)	268, 1059
Bst6I	CTCTTC	1 cut(s)	404
BstAFI	CTTAAG	1 cut(s)	752
BstAUI	TGTACA	1 cut(s)	669
BstBAI	YACGTR	1 cut(s)	493
BstC8I	GCNNGC	2 cut(s)	87, 168
BstDEI	CTNAG	3 cut(s)	260, 432, 612
BstF5I	GGATG	2 cut(s)	672, 796
BstFNI	CGCG	2 cut(s)	283, 572
BstHHI	GCGC	1 cut(s)	574
BstKTI	GATC	6 cut(s)	61, 196, 226, 287, 600, 881
BstMAI	GTCTC	2 cut(s)	190, 884
BstMBI	GATC	6 cut(s)	58, 193, 223, 284, 597, 878
BstMWI	GCNNNNNNNGC	2 cut(s)	344, 571
BstNSI	RCATGY	3 cut(s)	174, 565, 640
BstPAI	GACNNNNGTC	1 cut(s)	269
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	2 cut(s)	283, 572
BstV1I	GCAGC	2 cut(s)	117, 637
BstV2I	GAAGAC	1 cut(s)	891
BstX2I	RGATCY	1 cut(s)	597
BstYI	RGATCY	1 cut(s)	597
Bsu15I	ATCGAT	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	858
BsuRI	GGCC	1 cut(s)	353
BsuTUI	ATCGAT	1 cut(s)	192
BtsCI	GGATG	2 cut(s)	672, 796
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	354
BveI	ACCTGC	1 cut(s)	1075
Cac8I	GCNNGC	2 cut(s)	87, 168
CfoI	GCGC	1 cut(s)	574
ClaI	ATCGAT	1 cut(s)	192
Csp6I	GTAC	5 cut(s)	377, 670, 706, 984, 1055
CspCI	CAANNNNNGTGG	2 cut(s)	705, 740
CviAII	CATG	6 cut(s)	62, 171, 444, 562, 637, 686
CviQI	GTAC	5 cut(s)	377, 670, 706, 984, 1055
DdeI	CTNAG	3 cut(s)	260, 432, 612
DpnI	GATC	6 cut(s)	60, 195, 225, 286, 599, 880
DpnII	GATC	6 cut(s)	58, 193, 223, 284, 597, 878
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Ecl136II	GAGCTC	2 cut(s)	42, 450
Eco24I	GRGCYC	2 cut(s)	44, 452
Eco31I	GGTCTC	1 cut(s)	190
Eco32I	GATATC	2 cut(s)	159, 298
Eco53kI	GAGCTC	2 cut(s)	42, 450
Eco57I	CTGAAG	2 cut(s)	694, 846
Eco72I	CACGTG	1 cut(s)	493
EcoICRI	GAGCTC	2 cut(s)	42, 450
EcoRI	GAATTC	1 cut(s)	1004
EcoRV	GATATC	2 cut(s)	159, 298
EcoT38I	GRGCYC	2 cut(s)	44, 452
FaeI	CATG	6 cut(s)	65, 174, 447, 565, 640, 689
FatI	CATG	6 cut(s)	61, 170, 443, 561, 636, 685
FauNDI	CATATG	1 cut(s)	1010
Fnu4HI	GCNGC	2 cut(s)	131, 651
FokI	GGATG	2 cut(s)	659, 783
FriOI	GRGCYC	2 cut(s)	44, 452
Fsp4HI	GCNGC	2 cut(s)	131, 651
GlaI	GCGC	1 cut(s)	573
GluI	GCNGC	2 cut(s)	131, 651
HaeIII	GGCC	1 cut(s)	353
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	574
Hin1II	CATG	6 cut(s)	65, 174, 447, 565, 640, 689
Hin6I	GCGC	1 cut(s)	572
HinP1I	GCGC	1 cut(s)	572
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	2 cut(s)	744, 1112
Hpy188I	TCNGA	3 cut(s)	245, 538, 597
Hpy188III	TCNNGA	4 cut(s)	221, 227, 332, 929
Hpy8I	GTNNAC	2 cut(s)	744, 1112
HpyCH4III	ACNGT	2 cut(s)	268, 1059
HpyCH4IV	ACGT	3 cut(s)	81, 302, 492
HpyCH4V	TGCA	4 cut(s)	170, 215, 1028, 1084
HpyF10VI	GCNNNNNNNGC	2 cut(s)	344, 571
HpyF3I	CTNAG	3 cut(s)	260, 432, 612
HpySE526I	ACGT	3 cut(s)	81, 302, 492
Hsp92II	CATG	6 cut(s)	65, 174, 447, 565, 640, 689
HspAI	GCGC	1 cut(s)	572
Kzo9I	GATC	6 cut(s)	58, 193, 223, 284, 597, 878
LmnI	GCTCC	3 cut(s)	447, 523, 695
Lsp1109I	GCAGC	2 cut(s)	117, 637
MaeII	ACGT	3 cut(s)	81, 302, 492
MaeIII	GTNAC	3 cut(s)	103, 632, 905
MalI	GATC	6 cut(s)	60, 195, 225, 286, 599, 880
MboI	GATC	6 cut(s)	58, 193, 223, 284, 597, 878
MboII	GAAGA	5 cut(s)	124, 391, 470, 592, 891
MflI	RGATCY	1 cut(s)	597
MhlI	GDGCHC	2 cut(s)	44, 452
MseI	TTAA	5 cut(s)	753, 854, 963, 1131, 1138
MslI	CAYNNNNRTG	1 cut(s)	35
MspCI	CTTAAG	1 cut(s)	752
MspI	CCGG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	132
MvnI	CGCG	2 cut(s)	283, 572
MwoI	GCNNNNNNNGC	2 cut(s)	344, 571
NdeI	CATATG	1 cut(s)	1010
NdeII	GATC	6 cut(s)	58, 193, 223, 284, 597, 878
NlaIII	CATG	6 cut(s)	65, 174, 447, 565, 640, 689
NlaIV	GGNNCC	1 cut(s)	697
NspI	RCATGY	3 cut(s)	174, 565, 640
PciI	ACATGT	1 cut(s)	636
PctI	GAATGC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	4
PflFI	GACNNNGTC	1 cut(s)	895
PkrI	GCNGC	2 cut(s)	132, 652
PmaCI	CACGTG	1 cut(s)	493
PmlI	CACGTG	1 cut(s)	493
Ppu21I	YACGTR	1 cut(s)	493
PscI	ACATGT	1 cut(s)	636
PshAI	GACNNNNGTC	1 cut(s)	269
Psp124BI	GAGCTC	2 cut(s)	44, 452
PspCI	CACGTG	1 cut(s)	493
PspN4I	GGNNCC	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	597
PsyI	GACNNNGTC	1 cut(s)	895
RsaI	GTAC	5 cut(s)	378, 671, 707, 985, 1056
RsaNI	GTAC	5 cut(s)	377, 670, 706, 984, 1055
RseI	CAYNNNNRTG	1 cut(s)	35
SacI	GAGCTC	2 cut(s)	44, 452
SaqAI	TTAA	5 cut(s)	753, 854, 963, 1131, 1138
SatI	GCNGC	2 cut(s)	131, 651
Sau3AI	GATC	6 cut(s)	58, 193, 223, 284, 597, 878
SduI	GDGCHC	2 cut(s)	44, 452
SfcI	CTRYAG	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	35
SmlI	CTYRAG	2 cut(s)	679, 752
SmoI	CTYRAG	2 cut(s)	679, 752
SsiI	CCGC	2 cut(s)	182, 952
SspI	AATATT	1 cut(s)	501
SstI	GAGCTC	2 cut(s)	44, 452
TaaI	ACNGT	2 cut(s)	268, 1059
TaiI	ACGT	3 cut(s)	84, 305, 495
TaqI	TCGA	3 cut(s)	69, 192, 928
TatI	WGTACW	1 cut(s)	669
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	5 cut(s)	753, 854, 963, 1131, 1138
Tru9I	TTAA	5 cut(s)	753, 854, 963, 1131, 1138
TscAI	CASTG	1 cut(s)	354
TseI	GCWGC	2 cut(s)	130, 650
TspDTI	ATGAA	5 cut(s)	17, 132, 302, 592, 997
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	354
Tth111I	GACNNNGTC	1 cut(s)	895
Vha464I	CTTAAG	1 cut(s)	752
XapI	RAATTY	2 cut(s)	967, 1004
XceI	RCATGY	3 cut(s)	174, 565, 640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.