Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Forward (+)

46082007 .. 46082821

Gene Structure 815 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45821

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCATCCCCCCCTCTCAATATGGTTAAACTCAACTTCGATGGGTCTGTCGCTCGCTCCGGTCAGGCTTCTGCAGGTTTTGTAATCAGAGACCATTCAGGCAATCCTGTGGCGGCTGGTTCCCGCTGTATTGGTTCTTCTTCGATTCCTGTTGCTGAAGGAACCGCCCTTAAAGATGGGCTCCTTGCTGCGCTCCGGCACAATCTAAAAAGTGTTTCTCTGGAAGGGGACTCTTCTCTAATCATCAAATGTGTCAACCTCAGTGTGAAGTCCCATGATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

9.59

Weight (kDa)

8.77

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	12 - 89	6.1e-14	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	65
AciI	CCGC	3 cut(s)	113, 124, 165
AcuI	CTGAAG	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	183
BarI	GAAGNNNNNNTAC	2 cut(s)	121, 153
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	2 cut(s)	35, 170
BcoDI	GTCTC	1 cut(s)	84
BfmI	CTRYAG	1 cut(s)	72
BfuAI	ACCTGC	1 cut(s)	65
BisI	GCNGC	2 cut(s)	114, 189
BlsI	GCNGC	2 cut(s)	115, 190
BmiI	GGNNCC	3 cut(s)	121, 163, 182
BmsI	GCATC	1 cut(s)	14
BsaI	GGTCTC	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	59
BseGI	GGATG	1 cut(s)	5
BseMII	CTCAG	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	175
BsiSI	CCGG	2 cut(s)	60, 196
BslFI	GGGAC	2 cut(s)	242, 256
BsmAI	GTCTC	1 cut(s)	84
BsmFI	GGGAC	2 cut(s)	242, 256
Bso31I	GGTCTC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	183
BspACI	CCGC	3 cut(s)	113, 124, 165
BspCNI	CTCAG	1 cut(s)	273
BspLI	GGNNCC	3 cut(s)	121, 163, 182
BspMAI	CTGCAG	1 cut(s)	76
BspMI	ACCTGC	1 cut(s)	65
BspTNI	GGTCTC	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	238
BstC8I	GCNNGC	1 cut(s)	55
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	5
BstHHI	GCGC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	84
BstSFI	CTRYAG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	268
BveI	ACCTGC	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	55
CfoI	GCGC	1 cut(s)	193
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	3 cut(s)	68, 116, 181
CviKI_1	RGCY	3 cut(s)	68, 116, 181
DdeI	CTNAG	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
Eco24I	GRGCYC	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	84
Eco57I	CTGAAG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	1 cut(s)	278
FaiI	YATR	2 cut(s)	23, 276
FaqI	GGGAC	2 cut(s)	242, 256
FatI	CATG	1 cut(s)	274
FauI	CCCGC	1 cut(s)	131
Fnu4HI	GCNGC	2 cut(s)	114, 189
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	114, 189
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	2 cut(s)	114, 189
HapII	CCGG	2 cut(s)	60, 196
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	2 cut(s)	145, 230
HpaII	CCGG	2 cut(s)	60, 196
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	2 cut(s)	152, 218
HpyCH4V	TGCA	1 cut(s)	74
HpyF3I	CTNAG	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	1 cut(s)	191
LmnI	GCTCC	3 cut(s)	62, 186, 198
LpnPI	CCDG	9 cut(s)	50, 60, 73, 84, 102, 120, 162, 206, 209
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	1 cut(s)	14
MboII	GAAGA	3 cut(s)	129, 132, 225
MhlI	GDGCHC	1 cut(s)	183
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	2 cut(s)	24, 269
MseI	TTAA	2 cut(s)	27, 171
MspA1I	CMGCKG	1 cut(s)	126
MspI	CCGG	2 cut(s)	60, 196
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	3 cut(s)	121, 163, 182
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	115, 190
PleI	GAGTC	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	224
PspN4I	GGNNCC	3 cut(s)	121, 163, 182
PstI	CTGCAG	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	27, 171
SatI	GCNGC	2 cut(s)	114, 189
SchI	GAGTC	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	183
SetI	ASST	2 cut(s)	79, 261
SfaNI	GCATC	1 cut(s)	14
SfcI	CTRYAG	1 cut(s)	72
SsiI	CCGC	3 cut(s)	113, 124, 165
TaqI	TCGA	2 cut(s)	39, 143
TauI	GCSGC	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	2 cut(s)	27, 171
Tru9I	TTAA	2 cut(s)	27, 171
TscAI	CASTG	1 cut(s)	268
TseI	GCWGC	1 cut(s)	188
TspRI	CASTG	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.