FvH4_7g18051

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001617
Physical Location & Seq
Forward (+)
15181090 .. 15182152
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g18051.t1

Sequence Viewer

Length: 690 bp
ATGCAAAGGAACTTATCCAGAAAATGTCTAACAAGCTGGCTGGCTGGAAACAGAACACTTTATCAAGAGCATGGGAAACTTACTCTCATCAAAGCAAACTTGGCTGGAATGCCAAACCATGTGATGTCATGCTTTAAGTGCCCTAAGAAACTGACAGATGAAATAGATAAGCAAGAAAGAAATTTCTTGTGGGGAGCTGAGATGAAGCATGCTCCTATTGCCTGGAAGCAGATTTGCAAACCTAAATCACTGGGAGGTTTAGGAGTTAGACCTTCACAGTTTTTTAATAATGCTGCATTAGCAAAGCTTGCTTGGAAAATTCTTACTGACAAAAATAATTGGTGGGTGCAGGTTGTTTCAAAGAAATATCTCAGGAAGTGCTCCCTTTTCCAGGCAAAGAAAAAACAAAAAAACTCTTTTGCTTTTAATGGTATACTGGATGTAAGGGACATAATTCTAAAAGGTATGAGATGGATCATAGGGGATGATGGTTGGAACATTACAAAGCTAAGAGAACACCTAAATGAGGATGTGGTAAAAGAAATTCTGGGAATCCCAATCCCTACTCATCCCTCAGAAGATGAGTTTGTTTGGGGCCTGCACTACATGGTGTACAAAAGATGTTTGGACCTTGTCAGGATTAGCTCCACCAATCAATTGGGAAGAGGGTTTTTTCAAAGTTCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

230

Amino Acids

26.49

Weight (kDa)

9.86

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 340
AccI GTMKAC 1 cut(s) 433
AclWI GGATC 1 cut(s) 482
AcsI RAATTY 3 cut(s) 181, 318, 543
AfaI GTAC 1 cut(s) 614
AfiI CCNNNNNNNGG 2 cut(s) 391, 526
AgsI TTSAA 2 cut(s) 360, 677
AjnI CCWGG 2 cut(s) 221, 390
AluBI AGCT 5 cut(s) 36, 197, 307, 508, 645
AluI AGCT 5 cut(s) 36, 197, 307, 508, 645
Alw21I GWGCWC 1 cut(s) 383
AlwI GGATC 1 cut(s) 482
AoxI GGCC 1 cut(s) 595
ApeKI GCWGC 1 cut(s) 293
ApoI RAATTY 3 cut(s) 181, 318, 543
AspS9I GGNCC 2 cut(s) 595, 628
AvaII GGWCC 1 cut(s) 628
BaeGI GKGCMC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 383
BbvI GCAGC 1 cut(s) 280
BccI CCATC 2 cut(s) 465, 482
BciT130I CCWGG 2 cut(s) 223, 392
BfuAI ACCTGC 1 cut(s) 340
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme1390I CCNGG 2 cut(s) 223, 392
Bme18I GGWCC 1 cut(s) 628
BmgT120I GGNCC 2 cut(s) 595, 628
BmiI GGNNCC 1 cut(s) 596
BmrFI CCNGG 2 cut(s) 223, 392
BmrI ACTGGG 1 cut(s) 260
BmuI ACTGGG 1 cut(s) 260
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 526
Bse1I ACTGG 2 cut(s) 255, 441
BseBI CCWGG 2 cut(s) 223, 392
BseGI GGATG 4 cut(s) 445, 490, 535, 568
BseLI CCNNNNNNNGG 2 cut(s) 391, 526
BseMII CTCAG 3 cut(s) 189, 385, 588
BseNI ACTGG 2 cut(s) 255, 441
BseSI GKGCMC 1 cut(s) 143
BseXI GCAGC 1 cut(s) 280
BsgI GTGCAG 2 cut(s) 368, 584
BshFI GGCC 1 cut(s) 597
BsiHKAI GWGCWC 1 cut(s) 383
BslFI GGGAC 1 cut(s) 461
BslI CCNNNNNNNGG 2 cut(s) 391, 526
BsmFI GGGAC 1 cut(s) 461
BsmI GAATGC 1 cut(s) 114
BsnI GGCC 1 cut(s) 597
Bsp1286I GDGCHC 2 cut(s) 143, 383
Bsp1407I TGTACA 1 cut(s) 612
Bsp143I GATC 1 cut(s) 474
BspANI GGCC 1 cut(s) 597
BspCNI CTCAG 3 cut(s) 190, 384, 587
BspLI GGNNCC 1 cut(s) 596
BspMI ACCTGC 1 cut(s) 340
BspPI GGATC 1 cut(s) 482
BsrGI TGTACA 1 cut(s) 612
BsrI ACTGG 2 cut(s) 255, 441
BssMI GATC 1 cut(s) 474
BssNAI GTATAC 1 cut(s) 434
Bst1107I GTATAC 1 cut(s) 434
Bst2UI CCWGG 2 cut(s) 223, 392
Bst4CI ACNGT 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 658
BstAPI GCANNNNNTGC 1 cut(s) 308
BstAUI TGTACA 1 cut(s) 612
BstC8I GCNNGC 5 cut(s) 38, 42, 210, 309, 599
BstDEI CTNAG 5 cut(s) 144, 198, 371, 509, 574
BstENI CCTNNNNNAGG 2 cut(s) 389, 524
BstF5I GGATG 4 cut(s) 445, 490, 535, 568
BstKTI GATC 1 cut(s) 477
BstMBI GATC 1 cut(s) 474
BstMWI GCNNNNNNNGC 5 cut(s) 101, 138, 218, 299, 308
BstNI CCWGG 2 cut(s) 223, 392
BstNSI RCATGY 1 cut(s) 212
BstSCI CCNGG 2 cut(s) 221, 390
BstSLI GKGCMC 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 280
BstXI CCANNNNNNTGG 1 cut(s) 658
BstZ17I GTATAC 1 cut(s) 434
BsuRI GGCC 1 cut(s) 597
BtsCI GGATG 4 cut(s) 445, 490, 535, 568
BtsIMutI CAGTG 1 cut(s) 248
BveI ACCTGC 1 cut(s) 340
Cac8I GCNNGC 5 cut(s) 38, 42, 210, 309, 599
Cfr13I GGNCC 2 cut(s) 595, 628
Csp6I GTAC 1 cut(s) 613
CviAII CATG 5 cut(s) 71, 119, 129, 209, 607
CviJI RGCY 9 cut(s) 36, 40, 44, 104, 197, 307, 508, 597, 645
CviKI_1 RGCY 9 cut(s) 36, 40, 44, 104, 197, 307, 508, 597, 645
CviQI GTAC 1 cut(s) 613
DdeI CTNAG 5 cut(s) 144, 198, 371, 509, 574
DpnI GATC 1 cut(s) 476
DpnII GATC 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 658
EarI CTCTTC 1 cut(s) 658
Eco47I GGWCC 1 cut(s) 628
EcoNI CCTNNNNNAGG 2 cut(s) 389, 524
EcoO109I RGGNCCY 1 cut(s) 595
EcoRII CCWGG 2 cut(s) 221, 390
FaeI CATG 5 cut(s) 74, 122, 132, 212, 610
FaiI YATR 9 cut(s) 72, 120, 130, 210, 434, 452, 467, 479, 608
FaqI GGGAC 1 cut(s) 461
FatI CATG 5 cut(s) 70, 118, 128, 208, 606
FblI GTMKAC 1 cut(s) 433
Fnu4HI GCNGC 1 cut(s) 294
FokI GGATG 4 cut(s) 452, 497, 542, 555
Fsp4HI GCNGC 1 cut(s) 294
GluI GCNGC 1 cut(s) 294
HaeIII GGCC 1 cut(s) 597
Hin1II CATG 5 cut(s) 74, 122, 132, 212, 610
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 1 cut(s) 552
Hpy166II GTNNAC 2 cut(s) 434, 613
Hpy188I TCNGA 1 cut(s) 577
Hpy188III TCNNGA 4 cut(s) 18, 65, 373, 637
Hpy8I GTNNAC 2 cut(s) 434, 613
HpyAV CCTTC 1 cut(s) 282
HpyCH4III ACNGT 1 cut(s) 279
HpyCH4V TGCA 5 cut(s) 4, 237, 296, 349, 601
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 138, 218, 299, 308
HpyF3I CTNAG 5 cut(s) 144, 198, 371, 509, 574
Hsp92II CATG 5 cut(s) 74, 122, 132, 212, 610
Kzo9I GATC 1 cut(s) 474
LmnI GCTCC 4 cut(s) 194, 217, 386, 650
Lsp1109I GCAGC 1 cut(s) 280
MalI GATC 1 cut(s) 476
MboI GATC 1 cut(s) 474
MboII GAAGA 2 cut(s) 590, 675
MfeI CAATTG 1 cut(s) 656
MhlI GDGCHC 2 cut(s) 143, 383
MluCI AATT 6 cut(s) 181, 318, 337, 453, 543, 656
MmeI TCCRAC 1 cut(s) 473
MnlI CCTC 4 cut(s) 248, 520, 583, 659
MseI TTAA 3 cut(s) 135, 285, 426
MslI CAYNNNNRTG 1 cut(s) 522
MspR9I CCNGG 2 cut(s) 223, 392
MunI CAATTG 1 cut(s) 656
Mva1269I GAATGC 1 cut(s) 114
MvaI CCWGG 2 cut(s) 223, 392
MwoI GCNNNNNNNGC 5 cut(s) 101, 138, 218, 299, 308
NdeII GATC 1 cut(s) 474
NlaIII CATG 5 cut(s) 74, 122, 132, 212, 610
NlaIV GGNNCC 1 cut(s) 596
NspI RCATGY 1 cut(s) 212
PaeI GCATGC 1 cut(s) 212
PctI GAATGC 1 cut(s) 114
PfeI GAWTC 1 cut(s) 552
PflFI GACNNNGTC 1 cut(s) 632
PkrI GCNGC 1 cut(s) 295
Psp6I CCWGG 2 cut(s) 221, 390
PspGI CCWGG 2 cut(s) 221, 390
PspN4I GGNNCC 1 cut(s) 596
PspPI GGNCC 2 cut(s) 595, 628
PsyI GACNNNGTC 1 cut(s) 632
RsaI GTAC 1 cut(s) 614
RsaNI GTAC 1 cut(s) 613
RseI CAYNNNNRTG 1 cut(s) 522
SaqAI TTAA 3 cut(s) 135, 285, 426
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 1 cut(s) 474
Sau96I GGNCC 2 cut(s) 595, 628
ScrFI CCNGG 2 cut(s) 223, 392
SduI GDGCHC 2 cut(s) 143, 383
SinI GGWCC 1 cut(s) 628
SmiMI CAYNNNNRTG 1 cut(s) 522
SphI GCATGC 1 cut(s) 212
Sse9I AATT 6 cut(s) 181, 318, 337, 453, 543, 656
StyD4I CCNGG 2 cut(s) 221, 390
TaaI ACNGT 1 cut(s) 279
TasI AATT 6 cut(s) 181, 318, 337, 453, 543, 656
TatI WGTACW 1 cut(s) 612
TfiI GAWTC 1 cut(s) 552
Tru1I TTAA 3 cut(s) 135, 285, 426
Tru9I TTAA 3 cut(s) 135, 285, 426
TscAI CASTG 1 cut(s) 255
TseI GCWGC 1 cut(s) 293
TspDTI ATGAA 2 cut(s) 174, 218
TspRI CASTG 1 cut(s) 255
Tth111I GACNNNGTC 1 cut(s) 632
VpaK11BI GGWCC 1 cut(s) 628
XagI CCTNNNNNAGG 2 cut(s) 389, 524
XapI RAATTY 3 cut(s) 181, 318, 543
XceI RCATGY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 655
XmiI GTMKAC 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.