Rmu_co8368453.1_g000001

Reverse transcriptase-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8368453.1
Physical Location & Seq
Forward (+)
1 .. 970
970 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8368453.1_g000001.1.cds

Sequence Viewer

Length: 348 bp
gctctaggctttagagcctacttttggtgtagtcgatctgcctctgtccctgttgctgaaggaaatgctctccgagatgacctctatcatgactatctcctcaactgtaagaagattatgcggctcagaactttggtaagagacatcctcaatctcgcaaccacctttgatgacatccgtttcgaccatattccctgtgaagctaactttgtagctgatgcaattgcaaaccaaggtcatcgtcagaataacccagttacttggaaagagaagcttcctttatctgccctctcagcgttcaatttcgacaagtttagtcttggttgtagtagaggtttctcgttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

13.07

Weight (kDa)

8.46

Isoelectric Point (pI)

27.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 1 cut(s) 301
AluBI AGCT 3 cut(s) 203, 215, 274
AluI AGCT 3 cut(s) 203, 215, 274
Alw26I GTCTC 1 cut(s) 135
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 5
BisI GCNGC 1 cut(s) 122
BlsI GCNGC 1 cut(s) 123
BmrI ACTGGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 208
BmuI ACTGGG 1 cut(s) 248
BplI GAGNNNNNCTC 4 cut(s) 66, 98, 132, 164
BsaJI CCNNGG 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse1I ACTGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 2 cut(s) 144, 174
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMII CTCAG 2 cut(s) 139, 306
BseNI ACTGG 1 cut(s) 254
BseRI GAGGAG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 35
BspACI CCGC 1 cut(s) 121
BspCNI CTCAG 2 cut(s) 138, 305
BspHI TCATGA 1 cut(s) 88
BsrI ACTGG 1 cut(s) 254
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 232
Bst4CI ACNGT 1 cut(s) 107
BstDEI CTNAG 2 cut(s) 125, 292
BstF5I GGATG 2 cut(s) 144, 174
BstKTI GATC 1 cut(s) 38
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 1 cut(s) 35
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstXI CCANNNNNNTGG 1 cut(s) 261
BtsCI GGATG 2 cut(s) 144, 174
CciI TCATGA 1 cut(s) 88
CviAII CATG 1 cut(s) 89
CviJI RGCY 6 cut(s) 9, 17, 124, 203, 215, 274
CviKI_1 RGCY 6 cut(s) 9, 17, 124, 203, 215, 274
DdeI CTNAG 2 cut(s) 125, 292
DpnI GATC 1 cut(s) 37
DpnII GATC 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 232
Eco57I CTGAAG 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 232
FaeI CATG 1 cut(s) 92
FaiI YATR 3 cut(s) 90, 119, 189
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 1 cut(s) 32
FatI CATG 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 122
FokI GGATG 2 cut(s) 131, 161
Fsp4HI GCNGC 1 cut(s) 122
FspBI CTAG 1 cut(s) 5
GluI GCNGC 1 cut(s) 122
Hin1II CATG 1 cut(s) 92
HindIII AAGCTT 1 cut(s) 272
Hpy188I TCNGA 3 cut(s) 74, 128, 246
Hpy188III TCNNGA 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 53
HpyCH4III ACNGT 1 cut(s) 107
HpyCH4V TGCA 2 cut(s) 221, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 2 cut(s) 125, 292
Hsp92II CATG 1 cut(s) 92
Kzo9I GATC 1 cut(s) 35
LpnPI CCDG 3 cut(s) 63, 208, 267
LweI GCATC 1 cut(s) 208
MaeI CTAG 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 256
MalI GATC 1 cut(s) 37
MboI GATC 1 cut(s) 35
MboII GAAGA 1 cut(s) 124
MfeI CAATTG 1 cut(s) 222
MluCI AATT 2 cut(s) 222, 301
MnlI CCTC 6 cut(s) 52, 92, 110, 158, 299, 326
MunI CAATTG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 1 cut(s) 35
NlaIII CATG 1 cut(s) 92
PagI TCATGA 1 cut(s) 88
PkrI GCNGC 1 cut(s) 123
SatI GCNGC 1 cut(s) 122
Sau3AI GATC 1 cut(s) 35
SetI ASST 7 cut(s) 84, 167, 205, 217, 238, 276, 337
SfaNI GCATC 1 cut(s) 208
Sse9I AATT 2 cut(s) 222, 301
SsiI CCGC 1 cut(s) 121
SspMI CTAG 1 cut(s) 5
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 1 cut(s) 107
TaqI TCGA 3 cut(s) 34, 183, 306
TasI AATT 2 cut(s) 222, 301
TauI GCSGC 1 cut(s) 124
TspGWI ACGGA 1 cut(s) 167
XspI CTAG 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.