Rmu_sc0007466.1_g000002

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007466.1
OG0001617
Physical Location & Seq
Reverse (-)
9794 .. 10147
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007466.1_g000002.1.cds

Sequence Viewer

Length: 354 bp
atgatgatagaccgcaagtgtaatgcagcagctttatcagtacggctcttaaagatggcctcttatctgccttgcgatttaactatcgtcacctgctttgaaggagacatcctcttaatcataaactgcgtcaacaactgttgtgatccaccttggcatttgaagtcccttattagagacattgccttcctctctagatgttttgaaagcgtttcgttcacccatgtgttccgagaagctaatttcctcgccgactcagttacggctatatgggacaaaatctttcctctcctaaagtttggtttcatcaactgcctgcttcggctcttccggcttagctattggttgccctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

117

Amino Acids

13.51

Weight (kDa)

8.15

Isoelectric Point (pI)

24.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 101
Acc36I ACCTGC 1 cut(s) 101
AciI CCGC 1 cut(s) 13
AclWI GGATC 1 cut(s) 140
AfaI GTAC 1 cut(s) 42
AgsI TTSAA 3 cut(s) 101, 163, 206
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 3 cut(s) 32, 239, 339
AluI AGCT 3 cut(s) 32, 239, 339
Alw26I GTCTC 2 cut(s) 99, 171
AlwI GGATC 1 cut(s) 140
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 2 cut(s) 26, 29
AsuHPI GGTGA 2 cut(s) 82, 211
BbvI GCAGC 2 cut(s) 38, 41
BccI CCATC 1 cut(s) 49
BceAI ACGGC 2 cut(s) 59, 279
BcoDI GTCTC 2 cut(s) 99, 171
BfaI CTAG 2 cut(s) 195, 352
BfuAI ACCTGC 1 cut(s) 101
BisI GCNGC 2 cut(s) 27, 30
BlpI GCTNAGC 1 cut(s) 335
BlsI GCNGC 2 cut(s) 28, 31
BplI GAGNNNNNCTC 2 cut(s) 96, 128
Bpu1102I GCTNAGC 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 152
BseGI GGATG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 270
BseXI GCAGC 2 cut(s) 38, 41
BshFI GGCC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 331
BslFI GGGAC 2 cut(s) 151, 287
BsmAI GTCTC 2 cut(s) 99, 171
BsmFI GGGAC 2 cut(s) 151, 287
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 145
Bsp1720I GCTNAGC 1 cut(s) 335
BspACI CCGC 1 cut(s) 13
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 269
BspMI ACCTGC 1 cut(s) 101
BspPI GGATC 1 cut(s) 140
BspQI GCTCTTC 1 cut(s) 332
BsrDI GCAATG 1 cut(s) 180
BssECI CCNNGG 1 cut(s) 152
BssMI GATC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 317
BstDEI CTNAG 2 cut(s) 256, 335
BstF5I GGATG 1 cut(s) 108
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 2 cut(s) 99, 171
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 331
BstV1I GCAGC 2 cut(s) 38, 41
BsuRI GGCC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 108
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 317
CseI GACGC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 41
CviAII CATG 1 cut(s) 224
CviJI RGCY 8 cut(s) 32, 46, 59, 239, 266, 325, 334, 339
CviKI_1 RGCY 8 cut(s) 32, 46, 59, 239, 266, 325, 334, 339
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 2 cut(s) 256, 335
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
Eco130I CCWWGG 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 1 cut(s) 227
FaiI YATR 4 cut(s) 122, 225, 269, 271
FaqI GGGAC 2 cut(s) 151, 287
FatI CATG 1 cut(s) 223
Fnu4HI GCNGC 2 cut(s) 27, 30
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 2 cut(s) 27, 30
FspBI CTAG 2 cut(s) 195, 352
GluI GCNGC 2 cut(s) 27, 30
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 331
HgaI GACGC 1 cut(s) 118
Hin1II CATG 1 cut(s) 227
HincII GTYRAC 1 cut(s) 133
HindII GTYRAC 1 cut(s) 133
HinfI GANTC 1 cut(s) 254
HpaII CCGG 1 cut(s) 331
HphI GGTGA 2 cut(s) 82, 211
Hpy166II GTNNAC 2 cut(s) 133, 219
Hpy188I TCNGA 1 cut(s) 233
Hpy188III TCNNGA 1 cut(s) 195
Hpy8I GTNNAC 2 cut(s) 133, 219
HpyAV CCTTC 2 cut(s) 95, 196
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4V TGCA 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 1 cut(s) 331
HpyF3I CTNAG 2 cut(s) 256, 335
Hsp92II CATG 1 cut(s) 227
Kzo9I GATC 1 cut(s) 145
LguI GCTCTTC 1 cut(s) 332
LpnPI CCDG 3 cut(s) 106, 329, 344
Lsp1109I GCAGC 2 cut(s) 38, 41
MaeI CTAG 2 cut(s) 195, 352
MaeIII GTNAC 2 cut(s) 88, 259
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 1 cut(s) 319
MluCI AATT 1 cut(s) 241
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 5 cut(s) 70, 122, 200, 257, 297
MseI TTAA 3 cut(s) 50, 80, 116
MslI CAYNNNNRTG 1 cut(s) 224
MspI CCGG 1 cut(s) 331
MwoI GCNNNNNNNGC 1 cut(s) 331
NdeII GATC 1 cut(s) 145
NlaIII CATG 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 88
OliI CACNNNNGTG 1 cut(s) 224
PaqCI CACCTGC 1 cut(s) 101
PciSI GCTCTTC 1 cut(s) 332
PkrI GCNGC 2 cut(s) 28, 31
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
RseI CAYNNNNRTG 1 cut(s) 224
SapI GCTCTTC 1 cut(s) 332
SaqAI TTAA 3 cut(s) 50, 80, 116
SatI GCNGC 2 cut(s) 27, 30
Sau3AI GATC 1 cut(s) 145
SchI GAGTC 1 cut(s) 248
SetI ASST 5 cut(s) 34, 95, 154, 241, 341
SmiMI CAYNNNNRTG 1 cut(s) 224
Sse9I AATT 1 cut(s) 241
SsiI CCGC 1 cut(s) 13
SspMI CTAG 2 cut(s) 195, 352
StyI CCWWGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 140
TasI AATT 1 cut(s) 241
Tru1I TTAA 3 cut(s) 50, 80, 116
Tru9I TTAA 3 cut(s) 50, 80, 116
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 2 cut(s) 26, 29
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 1 cut(s) 295
XbaI TCTAGA 1 cut(s) 194
XspI CTAG 2 cut(s) 195, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.