Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Forward (+)

25082071 .. 25082785

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g23830.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGAGTCTCATCAAAGCCAAGAGGAAGATATTGATCATCTGTTCCTCCACTGCCAGTATGCTAAGCAGATTTGGAATGGTAGAAATAGATGCATTTGCAGGAATGAAAAGCATGTCCATACCAAAGCTTTTATCCGAGCTATGGCTATGGTTAATGAGTATTTCAAGGATAATGTGAAGAGCCGGGAAAATATGCAGGTAACAATGTCAAACCCCTTGGCGGCGGGAGGTTTCATTATCAGGAACCGGAGCAGTAAACCTATTCTCAATGGTGCTATGAGGTTGGGGTCTTCTACCATCAATGTTGCTGAGCCCATGGTTCTGTGTCAGACACTAATTTGGGCTAGGAGGAGAAACCTGACGCATGTGTGTGTGAAGGGTGACTCAAAACTTATCATTGATGTTGTTCGTGGTGCTTGCGATACGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

144

Amino Acids

16.34

Weight (kDa)

9.35

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	187
AciI	CCGC	2 cut(s)	221, 224
AfiI	CCNNNNNNNGG	2 cut(s)	142, 220
AgsI	TTSAA	1 cut(s)	166
AluBI	AGCT	2 cut(s)	128, 140
AluI	AGCT	2 cut(s)	128, 140
Alw26I	GTCTC	1 cut(s)	12
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	1 cut(s)	392
BanII	GRGCYC	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	282
BccI	CCATC	1 cut(s)	305
BclI	TGATCA	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	1 cut(s)	345
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	1 cut(s)	222
BlpI	GCTNAGC	2 cut(s)	63, 309
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	80
BpiI	GAAGAC	1 cut(s)	282
Bpu1102I	GCTNAGC	2 cut(s)	63, 309
BpuMI	CCSGG	1 cut(s)	185
BsaBI	GATNNNNATC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	216, 315
BsaWI	WCCGGW	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 220
Bse1I	ACTGG	1 cut(s)	55
Bse8I	GATNNNNATC	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	216, 315
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	2 cut(s)	142, 220
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	55
BseRI	GAGGAG	1 cut(s)	364
BsiSI	CCGG	2 cut(s)	184, 247
BslI	CCNNNNNNNGG	2 cut(s)	142, 220
BsmAI	GTCTC	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	34
Bsp1720I	GCTNAGC	2 cut(s)	63, 309
Bsp19I	CCATGG	1 cut(s)	315
BspACI	CCGC	2 cut(s)	221, 224
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	1 cut(s)	245
BspMI	ACCTGC	1 cut(s)	187
BspQI	GCTCTTC	1 cut(s)	173
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	216, 315
BssMI	GATC	1 cut(s)	34
BssT1I	CCWWGG	2 cut(s)	216, 315
Bst6I	CTCTTC	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	418
BstDEI	CTNAG	2 cut(s)	63, 309
BstDSI	CCRYGG	1 cut(s)	315
BstKTI	GATC	1 cut(s)	37
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	1 cut(s)	34
BstNSI	RCATGY	2 cut(s)	116, 368
BstSCI	CCNGG	1 cut(s)	183
BstV2I	GAAGAC	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	315
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	1 cut(s)	49
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	418
CseI	GACGC	1 cut(s)	370
CviAII	CATG	3 cut(s)	113, 316, 365
CviJI	RGCY	7 cut(s)	18, 128, 140, 146, 183, 313, 344
CviKI_1	RGCY	7 cut(s)	18, 128, 140, 146, 183, 313, 344
DdeI	CTNAG	2 cut(s)	63, 309
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	216, 315
Eco24I	GRGCYC	1 cut(s)	315
EcoT14I	CCWWGG	2 cut(s)	216, 315
EcoT22I	ATGCAT	1 cut(s)	95
EcoT38I	GRGCYC	1 cut(s)	315
ErhI	CCWWGG	2 cut(s)	216, 315
FaeI	CATG	3 cut(s)	116, 319, 368
FaiI	YATR	9 cut(s)	60, 114, 120, 143, 149, 194, 278, 317, 366
FatI	CATG	3 cut(s)	112, 315, 364
FauI	CCCGC	1 cut(s)	217
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	222
FriOI	GRGCYC	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	1 cut(s)	345
GluI	GCNGC	1 cut(s)	222
HapII	CCGG	2 cut(s)	184, 247
HgaI	GACGC	1 cut(s)	370
Hin1II	CATG	3 cut(s)	116, 319, 368
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	2 cut(s)	5, 383
HpaII	CCGG	2 cut(s)	184, 247
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	137, 330
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	1 cut(s)	257
HpyAV	CCTTC	1 cut(s)	370
HpyCH4V	TGCA	3 cut(s)	93, 99, 196
HpyF3I	CTNAG	2 cut(s)	63, 309
Hsp92II	CATG	3 cut(s)	116, 319, 368
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	1 cut(s)	34
LguI	GCTCTTC	1 cut(s)	173
LmnI	GCTCC	1 cut(s)	249
LpnPI	CCDG	7 cut(s)	68, 85, 182, 197, 226, 260, 371
LweI	GCATC	1 cut(s)	80
MaeI	CTAG	1 cut(s)	345
MaeIII	GTNAC	2 cut(s)	199, 380
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	38, 190, 282
MhlI	GDGCHC	1 cut(s)	315
MluCI	AATT	1 cut(s)	336
MlyI	GAGTC	2 cut(s)	14, 377
MnlI	CCTC	5 cut(s)	16, 56, 221, 273, 342
Mph1103I	ATGCAT	1 cut(s)	95
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	369
MspI	CCGG	2 cut(s)	184, 247
MspR9I	CCNGG	1 cut(s)	185
NciI	CCSGG	1 cut(s)	185
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	116, 319, 368
NlaIV	GGNNCC	1 cut(s)	245
NmuCI	GTSAC	1 cut(s)	380
NsiI	ATGCAT	1 cut(s)	95
NspI	RCATGY	2 cut(s)	116, 368
PciSI	GCTCTTC	1 cut(s)	173
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	2 cut(s)	13, 377
PpsI	GAGTC	2 cut(s)	13, 377
PspN4I	GGNNCC	1 cut(s)	245
RseI	CAYNNNNRTG	1 cut(s)	369
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	34
SchI	GAGTC	2 cut(s)	14, 377
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	315
SetI	ASST	7 cut(s)	130, 142, 201, 232, 262, 284, 360
SfaNI	GCATC	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	369
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	2 cut(s)	221, 224
SspMI	CTAG	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	2 cut(s)	216, 315
TasI	AATT	1 cut(s)	336
TauI	GCSGC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	56
TseFI	GTSAC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	380
TspDTI	ATGAA	2 cut(s)	120, 223
TspRI	CASTG	1 cut(s)	56
XceI	RCATGY	2 cut(s)	116, 368
XspI	CTAG	1 cut(s)	345
Zsp2I	ATGCAT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.