Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Reverse (-)

16638550 .. 16639683

Gene Structure 1134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24851.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTCCGGTATGGAGCGAGTCCTAAATCGTGTTAATGGTCCATTTGTTGCTCCTGTTTCAAAAGCTGTTGAAATCATCCGTTGGATCCCTCATGCTCCAAATTGGGTAAAGCTCGACTTTGATGGGTCTGTCCTCTCCACATTTGGTGTTGTTGGTTTTGTTATTAGAGACTCTTTTGGGGTTTCCTTAGTTGTTGGTGCACGTCGTCTCCATACTTCAAGTGTTCCAATTGCTGAGTGTTGTGCCCTTAAAGATGTCCCTTGGCGTCTCAAATCCCATGTTAGAGATGTCATTCATGTTGCTAATGAGTTTGATAATATCAGCTTTGGTCATGCCTTCTCAGAAGCCAATTTCTTGGTTGATGCTCTTGCAAATCTCGGGCACAGTTTGCATTCTCTGAAGATTTGGCTGGGTGCGCTTCTGGCCTCCTTAGACTGCGCAAGTGTTACATTTAGATACGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

155

Amino Acids

16.85

Weight (kDa)

7.83

Isoelectric Point (pI)

31.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	439
AclWI	GGATC	2 cut(s)	79, 92
AcuI	CTGAAG	1 cut(s)	419
AcyI	GRCGYC	1 cut(s)	265
AgsI	TTSAA	3 cut(s)	60, 71, 219
AjiI	CACGTC	1 cut(s)	203
AluBI	AGCT	3 cut(s)	65, 112, 324
AluI	AGCT	3 cut(s)	65, 112, 324
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	3 cut(s)	162, 212, 272
Alw44I	GTGCAC	1 cut(s)	198
AlwI	GGATC	2 cut(s)	79, 92
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	423
ApaLI	GTGCAC	1 cut(s)	198
AspLEI	GCGC	2 cut(s)	418, 440
AspS9I	GGNCC	1 cut(s)	38
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	38
BaeGI	GKGCMC	3 cut(s)	202, 247, 384
BamHI	GGATCC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	202
BccI	CCATC	1 cut(s)	116
BcoDI	GTCTC	3 cut(s)	162, 212, 272
Bme18I	GGWCC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	377
BmgBI	CACGTC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	86
BmsI	GCATC	1 cut(s)	352
BsaHI	GRCGYC	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	1 cut(s)	75
BseMII	CTCAG	2 cut(s)	225, 354
BseSI	GKGCMC	3 cut(s)	202, 247, 384
BseYI	CCCAGC	1 cut(s)	409
BshFI	GGCC	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	202
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	242
BsmAI	GTCTC	3 cut(s)	162, 212, 272
BsmBI	CGTCTC	2 cut(s)	212, 272
BsmFI	GGGAC	1 cut(s)	242
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	425
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	3 cut(s)	202, 247, 384
Bsp143I	GATC	1 cut(s)	84
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	2 cut(s)	226, 353
BspLI	GGNNCC	1 cut(s)	86
BspPI	GGATC	2 cut(s)	79, 92
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	1 cut(s)	84
BssNI	GRCGYC	1 cut(s)	265
BssT1I	CCWWGG	1 cut(s)	260
Bst4CI	ACNGT	2 cut(s)	386, 461
BstACI	GRCGYC	1 cut(s)	265
BstAPI	GCANNNNNTGC	1 cut(s)	388
BstDEI	CTNAG	4 cut(s)	187, 234, 340, 430
BstF5I	GGATG	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	418, 440
BstKTI	GATC	1 cut(s)	87
BstMAI	GTCTC	3 cut(s)	162, 212, 272
BstMBI	GATC	1 cut(s)	84
BstMWI	GCNNNNNNNGC	3 cut(s)	388, 415, 422
BstSLI	GKGCMC	3 cut(s)	202, 247, 384
BstX2I	RGATCY	1 cut(s)	84
BstXI	CCANNNNNNTGG	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	425
BtrI	CACGTC	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	75
CfoI	GCGC	2 cut(s)	418, 440
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	254
CviAII	CATG	4 cut(s)	92, 278, 296, 332
CviJI	RGCY	6 cut(s)	65, 112, 324, 347, 409, 425
CviKI_1	RGCY	6 cut(s)	65, 112, 324, 347, 409, 425
DdeI	CTNAG	4 cut(s)	187, 234, 340, 430
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
Eco130I	CCWWGG	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	377
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
Esp3I	CGTCTC	2 cut(s)	212, 272
FaeI	CATG	4 cut(s)	95, 281, 299, 335
FaiI	YATR	6 cut(s)	11, 93, 213, 279, 297, 333
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	4 cut(s)	91, 277, 295, 331
FokI	GGATG	1 cut(s)	62
FspI	TGCGCA	1 cut(s)	439
GlaI	GCGC	2 cut(s)	417, 439
GsaI	CCCAGC	1 cut(s)	413
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	1 cut(s)	6
HgaI	GACGC	1 cut(s)	254
HhaI	GCGC	2 cut(s)	418, 440
Hin1I	GRCGYC	1 cut(s)	265
Hin1II	CATG	4 cut(s)	95, 281, 299, 335
Hin6I	GCGC	2 cut(s)	416, 438
HinP1I	GCGC	2 cut(s)	416, 438
HinfI	GANTC	2 cut(s)	18, 170
HpaII	CCGG	1 cut(s)	6
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	2 cut(s)	343, 399
Hpy8I	GTNNAC	1 cut(s)	200
Hpy99I	CGWCG	1 cut(s)	207
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	2 cut(s)	386, 461
HpyCH4IV	ACGT	1 cut(s)	202
HpyCH4V	TGCA	3 cut(s)	200, 371, 391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	388, 415, 422
HpyF3I	CTNAG	4 cut(s)	187, 234, 340, 430
HpySE526I	ACGT	1 cut(s)	202
Hsp92I	GRCGYC	1 cut(s)	265
Hsp92II	CATG	4 cut(s)	95, 281, 299, 335
HspAI	GCGC	2 cut(s)	416, 438
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	3 cut(s)	13, 55, 100
LpnPI	CCDG	4 cut(s)	19, 66, 395, 407
LweI	GCATC	1 cut(s)	352
MaeII	ACGT	1 cut(s)	202
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MboII	GAAGA	1 cut(s)	412
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	3 cut(s)	202, 247, 384
MluCI	AATT	3 cut(s)	100, 228, 349
MlyI	GAGTC	2 cut(s)	27, 164
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	3 cut(s)	99, 143, 436
MseI	TTAA	3 cut(s)	33, 249, 463
MspI	CCGG	1 cut(s)	6
MunI	CAATTG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	391
MwoI	GCNNNNNNNGC	3 cut(s)	388, 415, 422
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	4 cut(s)	95, 281, 299, 335
NlaIV	GGNNCC	1 cut(s)	86
NsbI	TGCGCA	1 cut(s)	439
PctI	GAATGC	1 cut(s)	391
PleI	GAGTC	2 cut(s)	26, 164
PpsI	GAGTC	2 cut(s)	26, 164
PspFI	CCCAGC	1 cut(s)	409
PspN4I	GGNNCC	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	84
SaqAI	TTAA	3 cut(s)	33, 249, 463
Sau3AI	GATC	1 cut(s)	84
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	2 cut(s)	27, 164
SduI	GDGCHC	3 cut(s)	202, 247, 384
SetI	ASST	4 cut(s)	67, 114, 205, 326
SfaNI	GCATC	1 cut(s)	352
SinI	GGWCC	1 cut(s)	38
Sse9I	AATT	3 cut(s)	100, 228, 349
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	386, 461
TaiI	ACGT	1 cut(s)	205
TaqI	TCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	100, 228, 349
Tru1I	TTAA	3 cut(s)	33, 249, 463
Tru9I	TTAA	3 cut(s)	33, 249, 463
TspDTI	ATGAA	1 cut(s)	284
TspGWI	ACGGA	1 cut(s)	68
VneI	GTGCAC	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.