Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003708.1

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Reverse (-)

55294 .. 55692

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003708.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atggctgcaattggttttgtcattagaaaccatgttggctcccatgtggtggctggaactaggaagattggctccactactgttcttgtggcgaagtgtagcgcgctcaaagatggtctcctccatgcgctacatctcaactgctctacgattctagtggagggtgattcaaagctggtgatcgactgtgttaacaagattagtgatcctccttggaaaatttgttttcttgttcgtgacatccaaggcatctctagtatgtttgaggaaatctctctcatattcctcgtgaagcaaattttgtggcggacgcaattgcctcccttggacatcaatcttcgaatgcgattatatggcgagacaaacttcctctttcagctaactcgacttttaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

132

Amino Acids

14.77

Weight (kDa)

9.07

Isoelectric Point (pI)

21.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	49
AccII	CGCG	1 cut(s)	104
AciI	CCGC	1 cut(s)	307
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	2 cut(s)	219, 297
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	1 cut(s)	171
AluBI	AGCT	2 cut(s)	175, 379
AluI	AGCT	2 cut(s)	175, 379
Alw26I	GTCTC	2 cut(s)	122, 353
AlwI	GGATC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	219, 297
AspLEI	GCGC	3 cut(s)	104, 106, 130
AsuHPI	GGTGA	2 cut(s)	176, 190
AsuII	TTCGAA	1 cut(s)	340
BauI	CACGAG	1 cut(s)	287
BccI	CCATC	1 cut(s)	107
BcoDI	GTCTC	2 cut(s)	122, 353
BfaI	CTAG	3 cut(s)	60, 155, 255
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
BmiI	GGNNCC	2 cut(s)	40, 73
BmsI	GCATC	1 cut(s)	258
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
Bpu14I	TTCGAA	1 cut(s)	340
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	3 cut(s)	212, 244, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
BseDI	CCNNGG	3 cut(s)	212, 244, 324
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	49
BsePI	GCGCGC	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	110
Bsh1236I	CGCG	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	2 cut(s)	122, 353
BsmI	GAATGC	1 cut(s)	348
Bso31I	GGTCTC	1 cut(s)	122
Bsp119I	TTCGAA	1 cut(s)	340
Bsp143I	GATC	2 cut(s)	180, 205
BspACI	CCGC	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	2 cut(s)	40, 73
BspPI	GGATC	1 cut(s)	200
BspT104I	TTCGAA	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	122
BssECI	CCNNGG	3 cut(s)	212, 244, 324
BssHII	GCGCGC	1 cut(s)	102
BssMI	GATC	2 cut(s)	180, 205
BssSI	CACGAG	1 cut(s)	287
BssT1I	CCWWGG	3 cut(s)	212, 244, 324
Bst2BI	CACGAG	1 cut(s)	287
Bst4CI	ACNGT	2 cut(s)	82, 188
BstBI	TTCGAA	1 cut(s)	340
BstC8I	GCNNGC	1 cut(s)	104
BstF5I	GGATG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	104
BstHHI	GCGC	3 cut(s)	104, 106, 130
BstKTI	GATC	2 cut(s)	183, 208
BstMAI	GTCTC	2 cut(s)	122, 353
BstMBI	GATC	2 cut(s)	180, 205
BstUI	CGCG	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	240
Cac8I	GCNNGC	1 cut(s)	104
CfoI	GCGC	3 cut(s)	104, 106, 130
CseI	GACGC	1 cut(s)	319
CspCI	CAANNNNNGTGG	2 cut(s)	284, 319
CviAII	CATG	3 cut(s)	32, 44, 125
CviJI	RGCY	6 cut(s)	5, 39, 53, 72, 175, 379
CviKI_1	RGCY	6 cut(s)	5, 39, 53, 72, 175, 379
DpnI	GATC	2 cut(s)	182, 207
DpnII	GATC	2 cut(s)	180, 205
EciI	GGCGGA	1 cut(s)	322
Eco130I	CCWWGG	3 cut(s)	212, 244, 324
Eco31I	GGTCTC	1 cut(s)	122
EcoT14I	CCWWGG	3 cut(s)	212, 244, 324
ErhI	CCWWGG	3 cut(s)	212, 244, 324
FaeI	CATG	3 cut(s)	35, 47, 128
FaiI	YATR	7 cut(s)	33, 45, 126, 260, 281, 352, 354
FatI	CATG	3 cut(s)	31, 43, 124
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	3 cut(s)	60, 155, 255
GlaI	GCGC	3 cut(s)	103, 105, 129
GluI	GCNGC	1 cut(s)	6
HgaI	GACGC	1 cut(s)	319
HhaI	GCGC	3 cut(s)	104, 106, 130
Hin1II	CATG	3 cut(s)	35, 47, 128
Hin6I	GCGC	3 cut(s)	102, 104, 128
HinP1I	GCGC	3 cut(s)	102, 104, 128
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	2 cut(s)	151, 167
HpaI	GTTAAC	1 cut(s)	193
HphI	GGTGA	2 cut(s)	176, 190
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188III	TCNNGA	2 cut(s)	236, 289
Hpy8I	GTNNAC	1 cut(s)	193
HpyCH4III	ACNGT	2 cut(s)	82, 188
HpyCH4V	TGCA	1 cut(s)	8
Hsp92II	CATG	3 cut(s)	35, 47, 128
HspAI	GCGC	3 cut(s)	102, 104, 128
KspAI	GTTAAC	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	180, 205
LmnI	GCTCC	2 cut(s)	44, 77
LpnPI	CCDG	2 cut(s)	39, 161
LweI	GCATC	1 cut(s)	258
MaeI	CTAG	3 cut(s)	60, 155, 255
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	2 cut(s)	182, 207
MboI	GATC	2 cut(s)	180, 205
MboII	GAAGA	2 cut(s)	76, 329
MfeI	CAATTG	2 cut(s)	9, 314
MluCI	AATT	5 cut(s)	9, 219, 297, 314, 393
MnlI	CCTC	7 cut(s)	131, 154, 219, 259, 296, 330, 380
MseI	TTAA	2 cut(s)	192, 392
MunI	CAATTG	2 cut(s)	9, 314
Mva1269I	GAATGC	1 cut(s)	348
MvnI	CGCG	1 cut(s)	104
NdeII	GATC	2 cut(s)	180, 205
NlaIII	CATG	3 cut(s)	35, 47, 128
NlaIV	GGNNCC	2 cut(s)	40, 73
NmuCI	GTSAC	1 cut(s)	236
NspV	TTCGAA	1 cut(s)	340
PauI	GCGCGC	1 cut(s)	102
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	2 cut(s)	151, 167
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	7
PspN4I	GGNNCC	2 cut(s)	40, 73
PteI	GCGCGC	1 cut(s)	102
SaqAI	TTAA	2 cut(s)	192, 392
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	180, 205
SetI	ASST	2 cut(s)	177, 381
SfaNI	GCATC	1 cut(s)	258
SfuI	TTCGAA	1 cut(s)	340
Sse9I	AATT	5 cut(s)	9, 219, 297, 314, 393
SsiI	CCGC	1 cut(s)	307
SspMI	CTAG	3 cut(s)	60, 155, 255
StyI	CCWWGG	3 cut(s)	212, 244, 324
TaaI	ACNGT	2 cut(s)	82, 188
TaqI	TCGA	3 cut(s)	183, 340, 385
TasI	AATT	5 cut(s)	9, 219, 297, 314, 393
TfiI	GAWTC	2 cut(s)	151, 167
Tru1I	TTAA	2 cut(s)	192, 392
Tru9I	TTAA	2 cut(s)	192, 392
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	236
Van91I	CCANNNNNTGG	1 cut(s)	49
XapI	RAATTY	2 cut(s)	219, 297
XcmI	CCANNNNNNNNNTGG	1 cut(s)	50
XspI	CTAG	3 cut(s)	60, 155, 255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.