Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004825.1

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Reverse (-)

3508 .. 4066

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004825.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atggtggtgcatgctgtagctgcagctgggaattcttatagagctcacaatccttcccacatgaagagctttgttaacaactatggactgatcagaaaccatgctagctcccatgtggtggatggaactaggaagattggctccactactgttcttgtggcgaagtgtagcgcgctcaaagatggtctcctccatgcactacatctcaactgctctacgattctagtggagggtgattcaaagttggtgatcgactgtgttaacaagattagtgatcctccttggaaaatttgttttcttgtttgtgacatccaaggcatctctagtatgtttgaggaaatctctctcatattcctcgtgaagcaaattttgtggcggacgcaattgcctcccttggacatcaatcttcgaatgcgattatatggcgagacaaacttcctctttcagctaactcggctttttatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

155

Amino Acids

17.34

Weight (kDa)

8.9

Isoelectric Point (pI)

21.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccII	CGCG	1 cut(s)	173
AciI	CCGC	1 cut(s)	376
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	3 cut(s)	31, 288, 366
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	1 cut(s)	240
AluBI	AGCT	6 cut(s)	20, 26, 44, 69, 108, 448
AluI	AGCT	6 cut(s)	20, 26, 44, 69, 108, 448
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	2 cut(s)	191, 422
AlwI	GGATC	1 cut(s)	269
ApeKI	GCWGC	2 cut(s)	20, 23
ApoI	RAATTY	3 cut(s)	31, 288, 366
AspLEI	GCGC	2 cut(s)	173, 175
AsuHPI	GGTGA	2 cut(s)	245, 259
AsuII	TTCGAA	1 cut(s)	409
AsuNHI	GCTAGC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	46
BauI	CACGAG	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	7, 35
BccI	CCATC	2 cut(s)	116, 176
BclI	TGATCA	1 cut(s)	90
BcoDI	GTCTC	2 cut(s)	191, 422
BfaI	CTAG	4 cut(s)	105, 129, 224, 324
BfmI	CTRYAG	2 cut(s)	15, 21
BisI	GCNGC	2 cut(s)	21, 24
BlsI	GCNGC	2 cut(s)	22, 25
BmiI	GGNNCC	1 cut(s)	142
BmsI	GCATC	1 cut(s)	327
BmtI	GCTAGC	1 cut(s)	108
BplI	GAGNNNNNCTC	2 cut(s)	326, 358
Bpu14I	TTCGAA	1 cut(s)	409
BsaI	GGTCTC	1 cut(s)	191
BsaJI	CCNNGG	3 cut(s)	281, 313, 393
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
BseDI	CCNNGG	3 cut(s)	281, 313, 393
BseGI	GGATG	2 cut(s)	127, 309
BseLI	CCNNNNNNNGG	1 cut(s)	118
BsePI	GCGCGC	1 cut(s)	171
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	2 cut(s)	7, 35
BseYI	CCCAGC	1 cut(s)	26
Bsh1236I	CGCG	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	2 cut(s)	191, 422
BsmI	GAATGC	1 cut(s)	417
Bso31I	GGTCTC	1 cut(s)	191
Bsp119I	TTCGAA	1 cut(s)	409
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	90, 249, 274
BspACI	CCGC	1 cut(s)	376
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	25
BspOI	GCTAGC	1 cut(s)	108
BspPI	GGATC	1 cut(s)	269
BspQI	GCTCTTC	1 cut(s)	59
BspT104I	TTCGAA	1 cut(s)	409
BspTNI	GGTCTC	1 cut(s)	191
BssECI	CCNNGG	3 cut(s)	281, 313, 393
BssHII	GCGCGC	1 cut(s)	171
BssMI	GATC	3 cut(s)	90, 249, 274
BssSI	CACGAG	1 cut(s)	356
BssT1I	CCWWGG	3 cut(s)	281, 313, 393
Bst2BI	CACGAG	1 cut(s)	356
Bst4CI	ACNGT	2 cut(s)	151, 257
Bst6I	CTCTTC	1 cut(s)	59
BstBI	TTCGAA	1 cut(s)	409
BstC8I	GCNNGC	3 cut(s)	12, 106, 173
BstF5I	GGATG	2 cut(s)	127, 309
BstFNI	CGCG	1 cut(s)	173
BstHHI	GCGC	2 cut(s)	173, 175
BstKTI	GATC	3 cut(s)	93, 252, 277
BstMAI	GTCTC	2 cut(s)	191, 422
BstMBI	GATC	3 cut(s)	90, 249, 274
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 454
BstNSI	RCATGY	1 cut(s)	14
BstSFI	CTRYAG	2 cut(s)	15, 21
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	2 cut(s)	7, 35
BtsCI	GGATG	2 cut(s)	127, 309
Cac8I	GCNNGC	3 cut(s)	12, 106, 173
CfoI	GCGC	2 cut(s)	173, 175
CseI	GACGC	1 cut(s)	388
CspCI	CAANNNNNGTGG	2 cut(s)	353, 388
CviAII	CATG	5 cut(s)	11, 61, 101, 113, 194
CviJI	RGCY	8 cut(s)	20, 26, 44, 69, 108, 141, 448, 457
CviKI_1	RGCY	8 cut(s)	20, 26, 44, 69, 108, 141, 448, 457
DpnI	GATC	3 cut(s)	92, 251, 276
DpnII	GATC	3 cut(s)	90, 249, 274
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
EciI	GGCGGA	1 cut(s)	391
Ecl136II	GAGCTC	1 cut(s)	44
Eco130I	CCWWGG	3 cut(s)	281, 313, 393
Eco24I	GRGCYC	1 cut(s)	46
Eco31I	GGTCTC	1 cut(s)	191
Eco53kI	GAGCTC	1 cut(s)	44
EcoICRI	GAGCTC	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	31
EcoT14I	CCWWGG	3 cut(s)	281, 313, 393
EcoT38I	GRGCYC	1 cut(s)	46
ErhI	CCWWGG	3 cut(s)	281, 313, 393
FaeI	CATG	5 cut(s)	14, 64, 104, 116, 197
FatI	CATG	5 cut(s)	10, 60, 100, 112, 193
FbaI	TGATCA	1 cut(s)	90
Fnu4HI	GCNGC	2 cut(s)	21, 24
FokI	GGATG	2 cut(s)	134, 296
FriOI	GRGCYC	1 cut(s)	46
Fsp4HI	GCNGC	2 cut(s)	21, 24
FspBI	CTAG	4 cut(s)	105, 129, 224, 324
GlaI	GCGC	2 cut(s)	172, 174
GluI	GCNGC	2 cut(s)	21, 24
GsaI	CCCAGC	1 cut(s)	30
HgaI	GACGC	1 cut(s)	388
HhaI	GCGC	2 cut(s)	173, 175
Hin1II	CATG	5 cut(s)	14, 64, 104, 116, 197
Hin6I	GCGC	2 cut(s)	171, 173
HinP1I	GCGC	2 cut(s)	171, 173
HincII	GTYRAC	2 cut(s)	76, 262
HindII	GTYRAC	2 cut(s)	76, 262
HinfI	GANTC	2 cut(s)	220, 236
HpaI	GTTAAC	2 cut(s)	76, 262
HphI	GGTGA	2 cut(s)	245, 259
Hpy166II	GTNNAC	2 cut(s)	76, 262
Hpy188I	TCNGA	1 cut(s)	95
Hpy188III	TCNNGA	1 cut(s)	358
Hpy8I	GTNNAC	2 cut(s)	76, 262
HpyAV	CCTTC	1 cut(s)	63
HpyCH4III	ACNGT	2 cut(s)	151, 257
HpyCH4V	TGCA	3 cut(s)	10, 23, 197
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 454
Hsp92II	CATG	5 cut(s)	14, 64, 104, 116, 197
HspAI	GCGC	2 cut(s)	171, 173
Ksp22I	TGATCA	1 cut(s)	90
KspAI	GTTAAC	2 cut(s)	76, 262
Kzo9I	GATC	3 cut(s)	90, 249, 274
LguI	GCTCTTC	1 cut(s)	59
LmnI	GCTCC	2 cut(s)	113, 146
LpnPI	CCDG	1 cut(s)	12
Lsp1109I	GCAGC	2 cut(s)	7, 35
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	4 cut(s)	105, 129, 224, 324
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	3 cut(s)	92, 251, 276
MboI	GATC	3 cut(s)	90, 249, 274
MboII	GAAGA	3 cut(s)	76, 145, 398
MfeI	CAATTG	1 cut(s)	383
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	4 cut(s)	31, 288, 366, 383
MnlI	CCTC	7 cut(s)	200, 223, 288, 328, 365, 399, 449
MseI	TTAA	2 cut(s)	75, 261
MspA1I	CMGCKG	1 cut(s)	26
MunI	CAATTG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	417
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	20, 454
NdeII	GATC	3 cut(s)	90, 249, 274
NheI	GCTAGC	1 cut(s)	104
NlaIII	CATG	5 cut(s)	14, 64, 104, 116, 197
NlaIV	GGNNCC	1 cut(s)	142
NmeAIII	GCCGAG	1 cut(s)	433
NmuCI	GTSAC	1 cut(s)	305
NspI	RCATGY	1 cut(s)	14
NspV	TTCGAA	1 cut(s)	409
PaeI	GCATGC	1 cut(s)	14
PauI	GCGCGC	1 cut(s)	171
PciSI	GCTCTTC	1 cut(s)	59
PctI	GAATGC	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	220, 236
PflMI	CCANNNNNTGG	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	22, 25
Psp124BI	GAGCTC	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	26
PspN4I	GGNNCC	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	25
PteI	GCGCGC	1 cut(s)	171
PvuII	CAGCTG	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	46
SapI	GCTCTTC	1 cut(s)	59
SaqAI	TTAA	2 cut(s)	75, 261
SatI	GCNGC	2 cut(s)	21, 24
Sau3AI	GATC	3 cut(s)	90, 249, 274
SduI	GDGCHC	1 cut(s)	46
SetI	ASST	6 cut(s)	22, 28, 46, 71, 110, 450
SfaNI	GCATC	1 cut(s)	327
SfcI	CTRYAG	2 cut(s)	15, 21
SfuI	TTCGAA	1 cut(s)	409
SphI	GCATGC	1 cut(s)	14
Sse9I	AATT	4 cut(s)	31, 288, 366, 383
SsiI	CCGC	1 cut(s)	376
SspMI	CTAG	4 cut(s)	105, 129, 224, 324
SstI	GAGCTC	1 cut(s)	46
StyI	CCWWGG	3 cut(s)	281, 313, 393
TaaI	ACNGT	2 cut(s)	151, 257
TaqI	TCGA	2 cut(s)	252, 409
TasI	AATT	4 cut(s)	31, 288, 366, 383
TfiI	GAWTC	2 cut(s)	220, 236
Tru1I	TTAA	2 cut(s)	75, 261
Tru9I	TTAA	2 cut(s)	75, 261
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	2 cut(s)	20, 23
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	1 cut(s)	77
Van91I	CCANNNNNTGG	1 cut(s)	118
XapI	RAATTY	3 cut(s)	31, 288, 366
XceI	RCATGY	1 cut(s)	14
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119
XspI	CTAG	4 cut(s)	105, 129, 224, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.