Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009812.1

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Forward (+)

25922 .. 26314

Gene Structure 393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009812.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

atgggccggcacgagcctggcacgataataaatggggcggcccaagcacggcacgaagcacgactaggcccgcttaaaatgggtctggcccgtttgccacctctagtcgaaggtgactccaagttaattatagactctatcaacaaaaaatgtgctcctccttggcgtcttcgtactcttgtgaaaaacatcctgagtctggcttgcaattttgaagctgtttccttctcttatgttcccagggaagccaacttcgttgctgatgctgttacaaatatgggtcatagatcttctactcctatcacttggtccaaaaagttgccgttctcagctttgtctgcttttaattttgatcagtttagttattgttgtagtaggggctttatgttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

130

Amino Acids

14.37

Weight (kDa)

9.64

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	38, 71
AcyI	GRCGYC	1 cut(s)	166
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	2 cut(s)	48, 199
AgsI	TTSAA	1 cut(s)	215
AjnI	CCWGG	2 cut(s)	16, 239
AluBI	AGCT	2 cut(s)	218, 332
AluI	AGCT	2 cut(s)	218, 332
Alw21I	GWGCWC	1 cut(s)	157
AoxI	GGCC	4 cut(s)	4, 39, 67, 87
AspS9I	GGNCC	5 cut(s)	4, 40, 68, 88, 309
AsuHPI	GGTGA	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	309
BauI	CACGAG	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	157
BceAI	ACGGC	2 cut(s)	65, 307
BciT130I	CCWGG	2 cut(s)	18, 241
BclI	TGATCA	1 cut(s)	352
BfaI	CTAG	2 cut(s)	65, 104
BglII	AGATCT	1 cut(s)	287
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	18, 241
Bme18I	GGWCC	1 cut(s)	309
BmgT120I	GGNCC	5 cut(s)	4, 40, 68, 88, 309
BmrFI	CCNGG	2 cut(s)	18, 241
BmsI	GCATC	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	166
BsaJI	CCNNGG	3 cut(s)	161, 239, 240
Bsc4I	CCNNNNNNNGG	2 cut(s)	48, 199
Bse118I	RCCGGY	1 cut(s)	6
BseBI	CCWGG	2 cut(s)	18, 241
BseDI	CCNNGG	3 cut(s)	161, 239, 240
BseGI	GGATG	1 cut(s)	189
BseLI	CCNNNNNNNGG	2 cut(s)	48, 199
BseMII	CTCAG	2 cut(s)	185, 342
BseRI	GAGGAG	1 cut(s)	147
BshFI	GGCC	4 cut(s)	6, 41, 69, 89
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	7
BslI	CCNNNNNNNGG	2 cut(s)	48, 199
BsnI	GGCC	4 cut(s)	6, 41, 69, 89
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	287, 352
BspACI	CCGC	2 cut(s)	38, 71
BspANI	GGCC	4 cut(s)	6, 41, 69, 89
BspCNI	CTCAG	2 cut(s)	186, 341
BsrFI	RCCGGY	1 cut(s)	6
BssAI	RCCGGY	1 cut(s)	6
BssECI	CCNNGG	3 cut(s)	161, 239, 240
BssMI	GATC	2 cut(s)	287, 352
BssNI	GRCGYC	1 cut(s)	166
BssSI	CACGAG	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	161
Bst2BI	CACGAG	1 cut(s)	11
Bst2UI	CCWGG	2 cut(s)	18, 241
BstACI	GRCGYC	1 cut(s)	166
BstC8I	GCNNGC	3 cut(s)	8, 71, 205
BstDEI	CTNAG	2 cut(s)	194, 328
BstF5I	GGATG	1 cut(s)	189
BstKTI	GATC	2 cut(s)	290, 355
BstMBI	GATC	2 cut(s)	287, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 338
BstNI	CCWGG	2 cut(s)	18, 241
BstSCI	CCNGG	2 cut(s)	16, 239
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	287
BstYI	RGATCY	1 cut(s)	287
BsuRI	GGCC	4 cut(s)	6, 41, 69, 89
BtsCI	GGATG	1 cut(s)	189
Cac8I	GCNNGC	3 cut(s)	8, 71, 205
Cfr10I	RCCGGY	1 cut(s)	6
Cfr13I	GGNCC	5 cut(s)	4, 40, 68, 88, 309
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	174
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	2 cut(s)	194, 328
DpnI	GATC	2 cut(s)	289, 354
DpnII	GATC	2 cut(s)	287, 352
Eco130I	CCWWGG	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	309
EcoRII	CCWGG	2 cut(s)	16, 239
EcoT14I	CCWWGG	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	161
FaiI	YATR	5 cut(s)	131, 234, 278, 285, 386
FauI	CCCGC	1 cut(s)	78
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	39
FspBI	CTAG	2 cut(s)	65, 104
GluI	GCNGC	1 cut(s)	39
HaeIII	GGCC	4 cut(s)	6, 41, 69, 89
HapII	CCGG	1 cut(s)	7
HgaI	GACGC	1 cut(s)	155
Hin1I	GRCGYC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	116, 134, 196
HpaII	CCGG	1 cut(s)	7
HphI	GGTGA	1 cut(s)	125
Hpy188III	TCNNGA	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	104, 235
HpyCH4V	TGCA	1 cut(s)	207
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 338
HpyF3I	CTNAG	2 cut(s)	194, 328
Hsp92I	GRCGYC	1 cut(s)	166
KroI	GCCGGC	1 cut(s)	6
KroNI	GCCGGC	1 cut(s)	8
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	2 cut(s)	287, 352
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	8 cut(s)	3, 20, 30, 71, 185, 206, 226, 253
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	65, 104
MaeIII	GTNAC	2 cut(s)	113, 268
MalI	GATC	2 cut(s)	289, 354
MboI	GATC	2 cut(s)	287, 352
MboII	GAAGA	2 cut(s)	161, 282
MflI	RGATCY	1 cut(s)	287
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	3 cut(s)	126, 208, 346
MlyI	GAGTC	3 cut(s)	110, 128, 205
MnlI	CCTC	2 cut(s)	111, 168
MroNI	GCCGGC	1 cut(s)	6
MseI	TTAA	3 cut(s)	75, 125, 345
MspI	CCGG	1 cut(s)	7
MspR9I	CCNGG	2 cut(s)	18, 241
MvaI	CCWGG	2 cut(s)	18, 241
MwoI	GCNNNNNNNGC	2 cut(s)	44, 338
NaeI	GCCGGC	1 cut(s)	8
NdeII	GATC	2 cut(s)	287, 352
NgoMIV	GCCGGC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	113
PasI	CCCWGGG	1 cut(s)	240
PdiI	GCCGGC	1 cut(s)	8
PkrI	GCNGC	1 cut(s)	40
PleI	GAGTC	3 cut(s)	110, 128, 204
PpsI	GAGTC	3 cut(s)	110, 128, 204
Psp6I	CCWGG	2 cut(s)	16, 239
PspGI	CCWGG	2 cut(s)	16, 239
PspPI	GGNCC	5 cut(s)	4, 40, 68, 88, 309
PsuI	RGATCY	1 cut(s)	287
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
SaqAI	TTAA	3 cut(s)	75, 125, 345
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	2 cut(s)	287, 352
Sau96I	GGNCC	5 cut(s)	4, 40, 68, 88, 309
SchI	GAGTC	3 cut(s)	110, 128, 205
ScrFI	CCNGG	2 cut(s)	18, 241
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	4 cut(s)	103, 115, 220, 334
SfaNI	GCATC	1 cut(s)	253
SinI	GGWCC	1 cut(s)	309
Sse9I	AATT	3 cut(s)	126, 208, 346
SsiI	CCGC	2 cut(s)	38, 71
SspMI	CTAG	2 cut(s)	65, 104
StyD4I	CCNGG	2 cut(s)	16, 239
StyI	CCWWGG	1 cut(s)	161
TaqI	TCGA	1 cut(s)	108
TasI	AATT	3 cut(s)	126, 208, 346
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	3 cut(s)	75, 125, 345
Tru9I	TTAA	3 cut(s)	75, 125, 345
TseFI	GTSAC	1 cut(s)	113
Tsp45I	GTSAC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	309
XspI	CTAG	2 cut(s)	65, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.