Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003226.1

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Reverse (-)

231065 .. 232329

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003226.1_g000055.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgcacaacttaccccccaaccctccctcggaccccaacgggtaccaggggttcaagccctccctcggacccaacgggtaccggaggctcaagccctcatctaacctcataagggcctgtaggaatacccaagtgtcgtaccatgggtcgggttcacaacccaccatgatggtgttcatccaggatgacaccccggacacaaggggggtcggacctggccagcacggtcaatccaatgctgttcaggatgatattttccatgctcttcaaaacaacttcgaactggtcattgactcgattaacaacttgtgtgaccctccttggcgcatcaaacctcttatcagagatattcatcatatggtcaaagagttcgaagtaatttccttcaagcgtattcctcgtgaagctaactgtgttgcaaatgctatcaaaagcctaggccatgacgctttagaccctaacatatggaccaaaagattgtcacactctgctctctctgcttttaaatttgatctttcaatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

174

Amino Acids

19.46

Weight (kDa)

8.5

Isoelectric Point (pI)

31.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	42, 78
AccB1I	GGYRCC	2 cut(s)	42, 78
AcoI	YGGCCR	1 cut(s)	217
AcsI	RAATTY	1 cut(s)	506
AfaI	GTAC	3 cut(s)	44, 80, 140
AfiI	CCNNNNNNNGG	4 cut(s)	28, 65, 112, 148
AgsI	TTSAA	4 cut(s)	55, 269, 388, 519
AjnI	CCWGG	3 cut(s)	45, 180, 214
AluBI	AGCT	1 cut(s)	407
AluI	AGCT	1 cut(s)	407
AoxI	GGCC	3 cut(s)	114, 217, 439
ApoI	RAATTY	1 cut(s)	506
Asp718I	GGTACC	2 cut(s)	42, 78
AspA2I	CCTAGG	1 cut(s)	436
AspLEI	GCGC	1 cut(s)	327
AspS9I	GGNCC	5 cut(s)	31, 68, 114, 212, 468
AsuC2I	CCSGG	1 cut(s)	194
AsuII	TTCGAA	2 cut(s)	279, 372
AvaII	GGWCC	4 cut(s)	31, 68, 212, 468
AvrII	CCTAGG	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	219
BanI	GGYRCC	2 cut(s)	42, 78
BauI	CACGAG	1 cut(s)	399
BccI	CCATC	1 cut(s)	163
BciT130I	CCWGG	3 cut(s)	47, 182, 216
BcnI	CCSGG	1 cut(s)	194
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	1 cut(s)	118
BlnI	CCTAGG	1 cut(s)	436
Bme1390I	CCNGG	4 cut(s)	47, 182, 194, 216
Bme18I	GGWCC	4 cut(s)	31, 68, 212, 468
BmgT120I	GGNCC	5 cut(s)	31, 68, 114, 212, 468
BmiI	GGNNCC	4 cut(s)	33, 44, 70, 80
BmrFI	CCNGG	4 cut(s)	47, 182, 194, 216
BmsI	GCATC	1 cut(s)	336
Bpu14I	TTCGAA	2 cut(s)	279, 372
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	351
BsaJI	CCNNGG	7 cut(s)	27, 46, 64, 142, 192, 320, 436
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 65, 112, 148
Bse1I	ACTGG	1 cut(s)	288
Bse8I	GATNNNNATC	1 cut(s)	351
BseBI	CCWGG	3 cut(s)	47, 182, 216
BseDI	CCNNGG	7 cut(s)	27, 46, 64, 142, 192, 320, 436
BseGI	GGATG	3 cut(s)	177, 190, 253
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	4 cut(s)	28, 65, 112, 148
BseNI	ACTGG	1 cut(s)	288
BshFI	GGCC	3 cut(s)	116, 219, 441
BshNI	GGYRCC	2 cut(s)	42, 78
BsiSI	CCGG	2 cut(s)	82, 194
BslI	CCNNNNNNNGG	4 cut(s)	28, 65, 112, 148
BsnI	GGCC	3 cut(s)	116, 219, 441
Bsp119I	TTCGAA	2 cut(s)	279, 372
Bsp143I	GATC	1 cut(s)	511
Bsp19I	CCATGG	1 cut(s)	142
BspANI	GGCC	3 cut(s)	116, 219, 441
BspLI	GGNNCC	4 cut(s)	33, 44, 70, 80
BspQI	GCTCTTC	1 cut(s)	270
BspT104I	TTCGAA	2 cut(s)	279, 372
BspT107I	GGYRCC	2 cut(s)	42, 78
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	7 cut(s)	27, 46, 64, 142, 192, 320, 436
BssMI	GATC	1 cut(s)	511
BssSI	CACGAG	1 cut(s)	399
BssT1I	CCWWGG	3 cut(s)	142, 320, 436
Bst2BI	CACGAG	1 cut(s)	399
Bst2UI	CCWGG	3 cut(s)	47, 182, 216
Bst4CI	ACNGT	2 cut(s)	227, 413
Bst6I	CTCTTC	1 cut(s)	270
BstBI	TTCGAA	2 cut(s)	279, 372
BstC8I	GCNNGC	1 cut(s)	221
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	3 cut(s)	177, 190, 253
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	1 cut(s)	514
BstMBI	GATC	1 cut(s)	511
BstMWI	GCNNNNNNNGC	1 cut(s)	497
BstNI	CCWGG	3 cut(s)	47, 182, 216
BstSCI	CCNGG	4 cut(s)	45, 180, 192, 214
BstSFI	CTRYAG	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	169
BsuRI	GGCC	3 cut(s)	116, 219, 441
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	3 cut(s)	177, 190, 253
Cac8I	GCNNGC	1 cut(s)	221
CfoI	GCGC	1 cut(s)	327
Cfr13I	GGNCC	5 cut(s)	31, 68, 114, 212, 468
CseI	GACGC	1 cut(s)	455
Csp6I	GTAC	3 cut(s)	43, 79, 139
CviAII	CATG	4 cut(s)	143, 166, 260, 443
CviJI	RGCY	8 cut(s)	58, 88, 94, 116, 219, 407, 435, 441
CviKI_1	RGCY	8 cut(s)	58, 88, 94, 116, 219, 407, 435, 441
CviQI	GTAC	3 cut(s)	43, 79, 139
DpnI	GATC	1 cut(s)	513
DpnII	GATC	1 cut(s)	511
DraI	TTTAAA	1 cut(s)	505
EaeI	YGGCCR	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco130I	CCWWGG	3 cut(s)	142, 320, 436
Eco47I	GGWCC	4 cut(s)	31, 68, 212, 468
EcoO109I	RGGNCCY	1 cut(s)	114
EcoRII	CCWGG	3 cut(s)	45, 180, 214
EcoT14I	CCWWGG	3 cut(s)	142, 320, 436
ErhI	CCWWGG	3 cut(s)	142, 320, 436
FaeI	CATG	4 cut(s)	146, 169, 263, 446
FatI	CATG	4 cut(s)	142, 165, 259, 442
FauNDI	CATATG	2 cut(s)	357, 464
FokI	GGATG	3 cut(s)	164, 197, 260
FspBI	CTAG	1 cut(s)	437
GlaI	GCGC	1 cut(s)	326
HaeIII	GGCC	3 cut(s)	116, 219, 441
HapII	CCGG	2 cut(s)	82, 194
HgaI	GACGC	1 cut(s)	455
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	4 cut(s)	146, 169, 263, 446
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	2 cut(s)	82, 194
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	4 cut(s)	31, 68, 212, 344
Hpy188III	TCNNGA	2 cut(s)	245, 401
Hpy8I	GTNNAC	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	394
HpyCH4III	ACNGT	2 cut(s)	227, 413
HpyCH4V	TGCA	2 cut(s)	4, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	497
Hsp92II	CATG	4 cut(s)	146, 169, 263, 446
HspAI	GCGC	1 cut(s)	325
KpnI	GGTACC	2 cut(s)	46, 82
Kzo9I	GATC	1 cut(s)	511
LguI	GCTCTTC	1 cut(s)	270
LweI	GCATC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	437
MaeIII	GTNAC	2 cut(s)	311, 480
MalI	GATC	1 cut(s)	513
MboI	GATC	1 cut(s)	511
MboII	GAAGA	1 cut(s)	257
MlsI	TGGCCA	1 cut(s)	219
MluCI	AATT	2 cut(s)	378, 506
MluNI	TGGCCA	1 cut(s)	219
MlyI	GAGTC	1 cut(s)	287
MmeI	TCCRAC	1 cut(s)	190
Mox20I	TGGCCA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	219
MseI	TTAA	2 cut(s)	300, 504
MslI	CAYNNNNRTG	2 cut(s)	167, 170
Msp20I	TGGCCA	1 cut(s)	219
MspI	CCGG	2 cut(s)	82, 194
MspR9I	CCNGG	4 cut(s)	47, 182, 194, 216
MvaI	CCWGG	3 cut(s)	47, 182, 216
MwoI	GCNNNNNNNGC	1 cut(s)	497
NciI	CCSGG	1 cut(s)	194
NcoI	CCATGG	1 cut(s)	142
NdeI	CATATG	2 cut(s)	357, 464
NdeII	GATC	1 cut(s)	511
NlaIII	CATG	4 cut(s)	146, 169, 263, 446
NlaIV	GGNNCC	4 cut(s)	33, 44, 70, 80
NmuCI	GTSAC	2 cut(s)	311, 480
NspV	TTCGAA	2 cut(s)	279, 372
PciSI	GCTCTTC	1 cut(s)	270
PfoI	TCCNGGA	1 cut(s)	180
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
Psp6I	CCWGG	3 cut(s)	45, 180, 214
PspGI	CCWGG	3 cut(s)	45, 180, 214
PspN4I	GGNNCC	4 cut(s)	33, 44, 70, 80
PspPI	GGNCC	5 cut(s)	31, 68, 114, 212, 468
PsrI	GAACNNNNNNTAC	2 cut(s)	35, 67
RsaI	GTAC	3 cut(s)	44, 80, 140
RsaNI	GTAC	3 cut(s)	43, 79, 139
RseI	CAYNNNNRTG	2 cut(s)	167, 170
SapI	GCTCTTC	1 cut(s)	270
SaqAI	TTAA	2 cut(s)	300, 504
Sau3AI	GATC	1 cut(s)	511
Sau96I	GGNCC	5 cut(s)	31, 68, 114, 212, 468
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	4 cut(s)	47, 182, 194, 216
SetI	ASST	4 cut(s)	108, 217, 337, 409
SfaNI	GCATC	1 cut(s)	336
SfcI	CTRYAG	1 cut(s)	118
SfuI	TTCGAA	2 cut(s)	279, 372
SinI	GGWCC	4 cut(s)	31, 68, 212, 468
SmiMI	CAYNNNNRTG	2 cut(s)	167, 170
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	378, 506
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	4 cut(s)	45, 180, 192, 214
StyI	CCWWGG	3 cut(s)	142, 320, 436
TaaI	ACNGT	2 cut(s)	227, 413
TaqI	TCGA	3 cut(s)	279, 296, 372
TasI	AATT	2 cut(s)	378, 506
Tru1I	TTAA	2 cut(s)	300, 504
Tru9I	TTAA	2 cut(s)	300, 504
TseFI	GTSAC	2 cut(s)	311, 480
Tsp45I	GTSAC	2 cut(s)	311, 480
TspDTI	ATGAA	2 cut(s)	166, 341
VpaK11BI	GGWCC	4 cut(s)	31, 68, 212, 468
XapI	RAATTY	1 cut(s)	506
XmaJI	CCTAGG	1 cut(s)	436
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.