Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001617

Physical Location & Seq

Genomic Coordinates Forward (+)

21981955 .. 21984403

Gene Structure 2449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0153000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGAAGATGATATGCATGCATAAAGCAACTGGCAATGGAGGTGCTTACATATTGAAAAATCCTGCAAGAAATGAGGGAAGTCATCATGCCTCCGGTAATGCGCCCATGGGTGGTCAAGCGGTAAACGTCCAGCCTATTGAAATTCCCCTTATACCAGTAGAGGAGCTAAAGGAAATTACAGATAACTTTGGGACAAATGCGTTGATTGGGGAAGGTTCGTATGGAAGAGTATATTATGGGGTACTTAAAAGCAGGGAGCATGCAGCAATCAAGAAGCTAGATGCCAGCAAACAACCTGATGAGGTATCTTGCAAAGATGGGACCTATCTTGCAAAAAACTGTAAATTCATTACAGCTTCTCCCTCCCACAGAAAAATATGTTCCTCCATTCAAGGATCCATGGAGGTTTTGGTGACTGCATATTTGATTTTCTTGTCCACCACTGCAAAACGTGAAATTTGTATACCTTTATTCTATTACCATTCAAATTTTGACTGTAAGTTCCACTATGCTTTGGGTTTGAAAAAGATGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3

Protein Analysis

178

Amino Acids

19.59

Weight (kDa)

8.97

Isoelectric Point (pI)

40.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001617)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22511 FvH4_1g24851 FvH4_2g07191 FvH4_2g14861 FvH4_2g32021 FvH4_4g03801 FvH4_4g10273 FvH4_5g23942 FvH4_5g30341 FvH4_6g20921 FvH4_6g34981 FvH4_7g18051
prunus_persica	Prupe.1G189700_v2.0.a1
pyrus_communis	pycom02g11570 pycom09g01760 pycom14g11260 pycom16g23830
rosa_chinensis	RchiOBHm_Chr3g0495871 RchiOBHm_Chr4g0393821 RchiOBHm_Chr4g0422501 RchiOBHm_Chr5g0005861
rosa_multiflora	Rmu_co8368453.1_g000001 Rmu_sc0000050.1_g000010 Rmu_sc0000358.1_g000015 Rmu_sc0000405.1_g000012 Rmu_sc0003226.1_g000055 Rmu_sc0003400.1_g000030 Rmu_sc0003708.1_g000010 Rmu_sc0004825.1_g000002 Rmu_sc0005608.1_g000014 Rmu_sc0006223.1_g000011 Rmu_sc0007466.1_g000002 Rmu_sc0009812.1_g000005 Rmu_sc0009977.1_g000005 Rmu_sc0013532.1_g000004 Rmu_ssc0000127.1_g000045
rosa_roxburghii	Rroxscaffold_2G00093400
rosa_rugosa	Rorug01G0063900 Rorug01G0362100 Rorug02G0292800 Rorug02G0616900 Rorug03G0293500 Rorug04G0074100 Rorug04G0101200 Rorug04G0101700 Rorug04G0325000 Rorug06G0153000 Rorug06G0302200
rosa_wichuraiana	Rw1G039070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	463
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	2 cut(s)	390, 403
AcsI	RAATTY	4 cut(s)	141, 344, 456, 487
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	5 cut(s)	55, 140, 392, 486, 523
AluBI	AGCT	3 cut(s)	166, 277, 356
AluI	AGCT	3 cut(s)	166, 277, 356
AlwI	GGATC	2 cut(s)	390, 403
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	4 cut(s)	141, 344, 456, 487
ArsI	GACNNNNNNTTYG	2 cut(s)	406, 438
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	321
AsuHPI	GGTGA	1 cut(s)	424
AvaII	GGWCC	1 cut(s)	321
BamHI	GGATCC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	1 cut(s)	311
BfaI	CTAG	1 cut(s)	278
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme18I	GGWCC	1 cut(s)	321
BmgT120I	GGNCC	1 cut(s)	321
BmiI	GGNNCC	2 cut(s)	322, 397
BmsI	GCATC	2 cut(s)	271, 519
BsaJI	CCNNGG	2 cut(s)	105, 399
BsaWI	WCCGGW	1 cut(s)	92
BsaXI	ACNNNNNCTCC	2 cut(s)	343, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	34, 155
Bse3DI	GCAATG	1 cut(s)	40
BseDI	CCNNGG	2 cut(s)	105, 399
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	40
BseNI	ACTGG	2 cut(s)	34, 155
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	93
BslFI	GGGAC	2 cut(s)	205, 334
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmFI	GGGAC	2 cut(s)	205, 334
Bsp143I	GATC	1 cut(s)	395
Bsp19I	CCATGG	2 cut(s)	105, 399
BspACI	CCGC	1 cut(s)	119
BspLI	GGNNCC	2 cut(s)	322, 397
BspPI	GGATC	2 cut(s)	390, 403
BsrDI	GCAATG	1 cut(s)	40
BsrI	ACTGG	2 cut(s)	34, 155
BssECI	CCNNGG	2 cut(s)	105, 399
BssMI	GATC	1 cut(s)	395
BssNAI	GTATAC	1 cut(s)	464
BssT1I	CCWWGG	2 cut(s)	105, 399
Bst1107I	GTATAC	1 cut(s)	464
Bst4CI	ACNGT	2 cut(s)	341, 497
Bst6I	CTCTTC	1 cut(s)	220
BstC8I	GCNNGC	3 cut(s)	17, 261, 286
BstDSI	CCRYGG	2 cut(s)	105, 399
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	1 cut(s)	398
BstMBI	GATC	1 cut(s)	395
BstNSI	RCATGY	2 cut(s)	19, 263
BstV1I	GCAGC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	395
BstYI	RGATCY	1 cut(s)	395
BstZ17I	GTATAC	1 cut(s)	464
BtgI	CCRYGG	2 cut(s)	105, 399
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	3 cut(s)	17, 261, 286
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	5 cut(s)	16, 86, 106, 260, 400
CviJI	RGCY	4 cut(s)	133, 166, 277, 356
CviKI_1	RGCY	4 cut(s)	133, 166, 277, 356
CviQI	GTAC	1 cut(s)	242
DpnI	GATC	1 cut(s)	397
DpnII	GATC	1 cut(s)	395
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Eco130I	CCWWGG	2 cut(s)	105, 399
Eco47I	GGWCC	1 cut(s)	321
EcoO109I	RGGNCCY	1 cut(s)	321
EcoT14I	CCWWGG	2 cut(s)	105, 399
EcoT22I	ATGCAT	2 cut(s)	17, 21
ErhI	CCWWGG	2 cut(s)	105, 399
FaeI	CATG	5 cut(s)	19, 89, 109, 263, 403
FaqI	GGGAC	2 cut(s)	205, 334
FatI	CATG	5 cut(s)	15, 85, 105, 259, 399
FblI	GTMKAC	1 cut(s)	463
Fnu4HI	GCNGC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	278
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	264
HapII	CCGG	1 cut(s)	93
HhaI	GCGC	1 cut(s)	103
Hin1II	CATG	5 cut(s)	19, 89, 109, 263, 403
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HpaII	CCGG	1 cut(s)	93
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	3 cut(s)	124, 438, 464
Hpy188III	TCNNGA	1 cut(s)	271
Hpy8I	GTNNAC	3 cut(s)	124, 438, 464
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	2 cut(s)	341, 497
HpyCH4IV	ACGT	2 cut(s)	126, 451
HpyCH4V	TGCA	9 cut(s)	15, 19, 65, 263, 312, 332, 419, 446, 532
HpySE526I	ACGT	2 cut(s)	126, 451
Hsp92II	CATG	5 cut(s)	19, 89, 109, 263, 403
HspAI	GCGC	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	395
LmnI	GCTCC	2 cut(s)	163, 256
LpnPI	CCDG	8 cut(s)	15, 75, 106, 143, 168, 238, 298, 309
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	2 cut(s)	271, 519
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	2 cut(s)	126, 451
MaeIII	GTNAC	1 cut(s)	412
MalI	GATC	1 cut(s)	397
MboI	GATC	1 cut(s)	395
MboII	GAAGA	2 cut(s)	16, 237
MflI	RGATCY	1 cut(s)	395
MluCI	AATT	5 cut(s)	141, 174, 344, 456, 487
MnlI	CCTC	8 cut(s)	32, 67, 100, 154, 295, 373, 394, 397
Mph1103I	ATGCAT	2 cut(s)	17, 21
MseI	TTAA	1 cut(s)	246
MspI	CCGG	1 cut(s)	93
NcoI	CCATGG	2 cut(s)	105, 399
NdeII	GATC	1 cut(s)	395
NlaIII	CATG	5 cut(s)	19, 89, 109, 263, 403
NlaIV	GGNNCC	2 cut(s)	322, 397
NmuCI	GTSAC	1 cut(s)	412
NsiI	ATGCAT	2 cut(s)	17, 21
NspI	RCATGY	2 cut(s)	19, 263
PaeI	GCATGC	2 cut(s)	19, 263
PkrI	GCNGC	1 cut(s)	265
PpuMI	RGGWCCY	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	321
PspN4I	GGNNCC	2 cut(s)	322, 397
PspPI	GGNCC	1 cut(s)	321
PspPPI	RGGWCCY	1 cut(s)	321
PsuI	RGATCY	1 cut(s)	395
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	395
Sau96I	GGNCC	1 cut(s)	321
SfaNI	GCATC	2 cut(s)	271, 519
SinI	GGWCC	1 cut(s)	321
SphI	GCATGC	2 cut(s)	19, 263
Sse9I	AATT	5 cut(s)	141, 174, 344, 456, 487
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	1 cut(s)	278
StyI	CCWWGG	2 cut(s)	105, 399
TaaI	ACNGT	2 cut(s)	341, 497
TaiI	ACGT	2 cut(s)	129, 454
TasI	AATT	5 cut(s)	141, 174, 344, 456, 487
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	2 cut(s)	17, 337
TspRI	CASTG	1 cut(s)	448
VpaK11BI	GGWCC	1 cut(s)	321
XapI	RAATTY	4 cut(s)	141, 344, 456, 487
XceI	RCATGY	2 cut(s)	19, 263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XmiI	GTMKAC	1 cut(s)	463
XspI	CTAG	1 cut(s)	278
Zsp2I	ATGCAT	2 cut(s)	17, 21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.