Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Forward (+)

565795 .. 568555

Gene Structure 2761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2418 bp

ATGTTGAGCATAATGTTTGTACTTGCGTTTTCGGAGAGTGGTTTAATCAGCCTTGTTCACAAGGATTGCAGAATGGCAATCGTCCTCCTGATTCTGATGATTGTCATTATGGCTGTCTTCCTCTTTAGTTACTTTTTCCTAATGCTGGGTGCTGCCAAACGGGAGATTCAGCTTTGTACCAAACTCATAAAACAAGATGAAGCAACTCGACAAGCTGAGACAAAGAGTATGAAAAAATCTGAGGCAATTACAAGTGCAAGCCATGATGTTCGTAATGCTCTTGCTTGCATGACTGAATTGATCAGGATATCCTGCGATGAAGTTTCCCAGGGCTCCGAAATAAAGGATTATCTAACACAAATGGATGCATGCACAAAGCACCTCTTAGGTATATTGAACTCTATTCTTGATAAGAGCAAGATAGAAGCAGGTAAGGTGATACTTGAAGATGAGGAATTTGACATATTCCAACTTGTTGAAGAGGTAGTCGATTTCTTTCTTCCATCTGGTTTAAAGAAGGGCGTAGATGTGGTGTTGGATCCTTGTGATTGCTCTCTTCTAAAGTTTGCACATGTGAGAGGTGACAGGGGAAGGCTTAATCAAATATTAAGCAACTTATTAGGGAATGCTGTCAAATTTACTTCAGAGGGACATATAACAGTTCGTGCTTGGGTTCAGAAACCTAGTTTCATGAATTCAATCGCCGCTGCTGATTCTGATAAGAATAATGGTTTCTTGAAGCATTTTTTGTGTTTCTTGAACTACAAGAACATGGCCAAAGAACAATCAGATAGTATCAAATCAGTGAATGGGGTTCAACATGATTCAAATTCTTTGGAATTCGTTTTTGAGGTTGATGATACTGGGAGGGGAATTCCCAAGGAGAAGCAAAAAGAAGTGTTTGAAAACTATGTCCAAGTCAAAGAAACAACTCATGGAGCAGGAGGTACTGGCTTAGGACTTGGTATTGTTCAGTCTCTGGTACGCTTGATGCACGGAGAAATAGGAATTGTGGACAAGGAGATTGGTGAGAAAGGGACATGCTTCAGGTTTAATGTTCTCCTGAGAGCTATCAATATGTGTGAGGTACAACAAGACCTTGAAATGGGAGGTGATCCTAGTTATGATGACAGAGATCAACAATTGGGATTAATAGCAAATGCAAGCCCGAGATTGACCATATTTCATAGTCCAAATCTCACACCAATTGGAAGTCCTATGTTGAATGTCTTCCGCGGCACCCCTAGTAGTTCTAAGGTAGAGGAATCCATTGTTGTACTACTGATTAAGAATGAAGAGCGGCGGAGAATAGTATACCGGTTCATGAAGAGCTGCCTTGGGATAAAGGTATCAGTGGTAGAACAATGGGAACAACTAGCTCATACTCTCAAGAAAATCAAACACATGAAGATGAAGGGTTACCATTCTCCATATCATCCTAGTTCATCTTCATCAGGAATCTCTGATTTGGGTCTGCAGGACTGCAGCTTGAGCAAATCTGCATCATGCAACTCCGGTAATAGAGCAAAGGAGTTAATGAGTGCTATAGATGGAACATACAGCAACATGTGCTCTCTATTCAAGAAGACGACTGCCAATCTTGGCGGTGCATCCGCCTCTATATTGCTAGTGATAGATGCTACAGCTGGGCCATATCCAGAACTATGTAAGATTGTAACTGAGTTCAAAAGAGGCCTTCAAAATGCTTGCAGGACCGTTTGGTTAGAAAATCCGCAGTCTCATAGATTAATGGACTTGAGTGGCCTTGATCCGGATGATGTTATCATCACAAGGGCACTTCATGGTACTCGTCTATTTGAAGTGTTAAGATTTCTTCCAGAGTATGGAGGTGCATTGCCAAACAGATCAGCAGGGGACACATTTCAGGTTCAAGATCCTAGCTCATCTAGATATAGGTTGCATACTGATGATGAGTCTGATATCTCATCTTCACCGTACCATTGTCATGATATTGGCTCTACATCAAGAAACTCACCAGTTGGACACAGAGAAACACATGAACATGGTAATCAAATAAGCACATCCTTGAGTGGGAAAAGATTCCTGGTTGTGGAGAATGATAACGCAATGAGGTTTTTGGTTAGGACGATTCTGTCAAAGGAGGGAGCAACTGTGAAGCTTTGTCAAAATGGAAGAGAAGCCGTAGATGTAATTCAAAAAGATCTTGTCAACCAAAAGAAACACGAATATGATTTTGTACTAATGGACTGTCAGATGCCTGTAATAAGGGAAGTGGAGAAACGTTACAACGTTCGCATTCCGATTATTGCATTAACAGCTGATACACCAGGCGAGGAAACAAGAAAGATGTTGGAGGCCGGCATGGATGACTATCTGAGCAAACCCTTGCAAAAGAATCGTCTACTTGAAACAATGGCTAGACTGGTAGGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

806

Amino Acids

89.67

Weight (kDa)

6.56

Isoelectric Point (pI)

35.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisKA	PF00512	79 - 144	1.4e-06	His Kinase A (phospho-acceptor) domain
HATPase_c	PF02518	279 - 354	3.8e-15	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Response_reg	PF00072	689 - 798	1.3e-17	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2113
Acc36I	ACCTGC	1 cut(s)	419
AccB1I	GGYRCC	1 cut(s)	1238
AccB7I	CCANNNNNTGG	1 cut(s)	1844
AccBSI	CCGCTC	1 cut(s)	1300
AccI	GTMKAC	2 cut(s)	1314, 2383
AccII	CGCG	1 cut(s)	1236
AccIII	TCCGGA	1 cut(s)	1771
AciI	CCGC	8 cut(s)	705, 1234, 1236, 1300, 1303, 1605, 1614, 1733
AclI	AACGTT	2 cut(s)	2263, 2271
AclWI	GGATC	5 cut(s)	533, 546, 1109, 1763, 1889
AcoI	YGGCCR	1 cut(s)	774
AcsI	RAATTY	6 cut(s)	455, 635, 694, 829, 839, 873
AcuI	CTGAAG	2 cut(s)	627, 1030
AfaI	GTAC	9 cut(s)	21, 178, 949, 984, 1089, 1278, 1807, 1958, 2220
AfiI	CCNNNNNNNGG	6 cut(s)	145, 1105, 1771, 1844, 2052, 2071
AflIII	ACRYGT	2 cut(s)	571, 1566
AgeI	ACCGGT	1 cut(s)	1317
AjnI	CCWGG	3 cut(s)	327, 2064, 2308
Alw21I	GWGCWC	1 cut(s)	1574
Alw26I	GTCTC	3 cut(s)	212, 981, 1743
AlwI	GGATC	5 cut(s)	533, 546, 1109, 1763, 1889
AlwNI	CAGNNNCTG	1 cut(s)	979
Ama87I	CYCGRG	1 cut(s)	1168
Aor13HI	TCCGGA	1 cut(s)	1771
AoxI	GGCC	5 cut(s)	774, 1649, 1693, 1762, 2337
ApeKI	GCWGC	4 cut(s)	152, 707, 1332, 1485
ApoI	RAATTY	6 cut(s)	455, 635, 694, 829, 839, 873
ArsI	GACNNNNNNTTYG	2 cut(s)	2365, 2397
AseI	ATTAAT	2 cut(s)	1151, 1748
AsiGI	ACCGGT	1 cut(s)	1317
Asp700I	GAANNNNTTC	2 cut(s)	1229, 2060
AspS9I	GGNCC	2 cut(s)	1649, 1713
AsuHPI	GGTGA	6 cut(s)	448, 593, 1040, 1124, 1944, 1986
AvaI	CYCGRG	1 cut(s)	1168
AvaII	GGWCC	1 cut(s)	1713
BaeGI	GKGCMC	1 cut(s)	1798
BalI	TGGCCA	1 cut(s)	776
BamHI	GGATCC	1 cut(s)	538
BanI	GGYRCC	1 cut(s)	1238
BanII	GRGCYC	1 cut(s)	335
BbsI	GAAGAC	3 cut(s)	109, 1222, 1592
Bbv12I	GWGCWC	1 cut(s)	1574
BbvI	GCAGC	4 cut(s)	139, 694, 1319, 1497
BccI	CCATC	2 cut(s)	511, 1544
BceAI	ACGGC	1 cut(s)	2147
BcgI	CGANNNNNNTGC	2 cut(s)	2360, 2394
BciT130I	CCWGG	3 cut(s)	329, 2066, 2310
BclI	TGATCA	1 cut(s)	300
BcoDI	GTCTC	3 cut(s)	212, 981, 1743
BfaI	CTAG	9 cut(s)	684, 1119, 1245, 1376, 1440, 1628, 1899, 1908, 2400
BfmI	CTRYAG	4 cut(s)	1475, 1483, 1545, 1641
BfuAI	ACCTGC	1 cut(s)	419
BglII	AGATCT	1 cut(s)	2182
BisI	GCNGC	7 cut(s)	153, 705, 708, 1237, 1301, 1333, 1486
BlsI	GCNGC	7 cut(s)	154, 706, 709, 1238, 1302, 1334, 1487
Bme1390I	CCNGG	3 cut(s)	329, 2066, 2310
Bme18I	GGWCC	1 cut(s)	1713
BmeT110I	CYCGRG	1 cut(s)	1168
BmgT120I	GGNCC	2 cut(s)	1649, 1713
BmiI	GGNNCC	3 cut(s)	334, 540, 1240
BmrFI	CCNGG	3 cut(s)	329, 2066, 2310
BmrI	ACTGGG	1 cut(s)	873
BmsI	GCATC	6 cut(s)	355, 981, 1511, 1619, 1627, 2226
BmuI	ACTGGG	1 cut(s)	873
BpiI	GAAGAC	3 cut(s)	109, 1222, 1592
Bpu10I	CCTNAGC	1 cut(s)	955
BpuEI	CTTGAG	4 cut(s)	1373, 1510, 1777, 2068
BsaBI	GATNNNNATC	1 cut(s)	2352
BsaJI	CCNNGG	5 cut(s)	327, 328, 879, 1234, 1336
BsaWI	WCCGGW	3 cut(s)	1317, 1514, 1771
BsaXI	ACNNNNNCTCC	2 cut(s)	2118, 2148
Bsc4I	CCNNNNNNNGG	6 cut(s)	145, 1105, 1771, 1844, 2052, 2071
Bse118I	RCCGGY	2 cut(s)	1317, 2339
Bse1I	ACTGG	4 cut(s)	868, 955, 1997, 2409
Bse3DI	GCAATG	2 cut(s)	1853, 2094
Bse8I	GATNNNNATC	1 cut(s)	2352
BseAI	TCCGGA	1 cut(s)	1771
BseBI	CCWGG	3 cut(s)	329, 2066, 2310
BseDI	CCNNGG	5 cut(s)	327, 328, 879, 1234, 1336
BseGI	GGATG	6 cut(s)	370, 1435, 1610, 1780, 2042, 2353
BseJI	GATNNNNATC	1 cut(s)	2352
BseLI	CCNNNNNNNGG	6 cut(s)	145, 1105, 1771, 1844, 2052, 2071
BseMI	GCAATG	2 cut(s)	1853, 2094
BseMII	CTCAG	5 cut(s)	207, 231, 1055, 1671, 2348
BseNI	ACTGG	4 cut(s)	868, 955, 1997, 2409
BseSI	GKGCMC	1 cut(s)	1798
BseXI	GCAGC	4 cut(s)	139, 694, 1319, 1497
BseYI	CCCAGC	2 cut(s)	145, 1646
Bsh1236I	CGCG	1 cut(s)	1236
BshFI	GGCC	5 cut(s)	776, 1651, 1695, 1764, 2339
BshNI	GGYRCC	1 cut(s)	1238
BshTI	ACCGGT	1 cut(s)	1317
BsiHKAI	GWGCWC	1 cut(s)	1574
BsiHKCI	CYCGRG	1 cut(s)	1168
BsiSI	CCGG	4 cut(s)	1318, 1515, 1772, 2340
BslFI	GGGAC	3 cut(s)	663, 1051, 1889
BslI	CCNNNNNNNGG	6 cut(s)	145, 1105, 1771, 1844, 2052, 2071
BsmAI	GTCTC	3 cut(s)	212, 981, 1743
BsmFI	GGGAC	3 cut(s)	663, 1051, 1889
BsmI	GAATGC	2 cut(s)	631, 2277
BsnI	GGCC	5 cut(s)	776, 1651, 1695, 1764, 2339
BsoBI	CYCGRG	1 cut(s)	1168
Bsp1286I	GDGCHC	3 cut(s)	335, 1574, 1798
Bsp13I	TCCGGA	1 cut(s)	1771
Bsp143I	GATC	8 cut(s)	300, 538, 1114, 1135, 1768, 1865, 1894, 2182
BspACI	CCGC	8 cut(s)	705, 1234, 1236, 1300, 1303, 1605, 1614, 1733
BspANI	GGCC	5 cut(s)	776, 1651, 1695, 1764, 2339
BspCNI	CTCAG	5 cut(s)	208, 232, 1056, 1672, 2349
BspEI	TCCGGA	1 cut(s)	1771
BspFNI	CGCG	1 cut(s)	1236
BspHI	TCATGA	3 cut(s)	690, 1323, 1966
BspLI	GGNNCC	3 cut(s)	334, 540, 1240
BspMAI	CTGCAG	2 cut(s)	1479, 1487
BspMI	ACCTGC	1 cut(s)	419
BspPI	GGATC	5 cut(s)	533, 546, 1109, 1763, 1889
BspQI	GCTCTTC	2 cut(s)	1290, 1322
BspT107I	GGYRCC	1 cut(s)	1238
BsrBI	CCGCTC	1 cut(s)	1300
BsrDI	GCAATG	2 cut(s)	1853, 2094
BsrFI	RCCGGY	2 cut(s)	1317, 2339
BsrI	ACTGG	4 cut(s)	868, 955, 1997, 2409
BssAI	RCCGGY	2 cut(s)	1317, 2339
BssECI	CCNNGG	5 cut(s)	327, 328, 879, 1234, 1336
BssMI	GATC	8 cut(s)	300, 538, 1114, 1135, 1768, 1865, 1894, 2182
BssNAI	GTATAC	1 cut(s)	1315
BssT1I	CCWWGG	2 cut(s)	879, 1336
Bst1107I	GTATAC	1 cut(s)	1315
Bst2UI	CCWGG	3 cut(s)	329, 2066, 2310
Bst4CI	ACNGT	5 cut(s)	661, 1717, 1956, 2134, 2231
Bst6I	CTCTTC	5 cut(s)	474, 561, 1290, 1322, 2149
BstAPI	GCANNNNNTGC	1 cut(s)	1569
BstC8I	GCNNGC	6 cut(s)	259, 286, 370, 1165, 1708, 2341
BstDEI	CTNAG	8 cut(s)	216, 240, 385, 955, 1064, 1254, 1680, 2357
BstDSI	CCRYGG	1 cut(s)	1234
BstEII	GGTNACC	1 cut(s)	1418
BstF5I	GGATG	6 cut(s)	370, 1435, 1610, 1780, 2042, 2353
BstFNI	CGCG	1 cut(s)	1236
BstKTI	GATC	8 cut(s)	303, 541, 1117, 1138, 1771, 1868, 1897, 2185
BstMAI	GTCTC	3 cut(s)	212, 981, 1743
BstMBI	GATC	8 cut(s)	300, 538, 1114, 1135, 1768, 1865, 1894, 2182
BstMWI	GCNNNNNNNGC	3 cut(s)	1491, 1569, 2297
BstNI	CCWGG	3 cut(s)	329, 2066, 2310
BstNSI	RCATGY	4 cut(s)	372, 575, 1044, 1570
BstPI	GGTNACC	1 cut(s)	1418
BstSCI	CCNGG	3 cut(s)	327, 2064, 2308
BstSFI	CTRYAG	4 cut(s)	1475, 1483, 1545, 1641
BstSLI	GKGCMC	1 cut(s)	1798
BstUI	CGCG	1 cut(s)	1236
BstV1I	GCAGC	4 cut(s)	139, 694, 1319, 1497
BstV2I	GAAGAC	3 cut(s)	109, 1222, 1592
BstX2I	RGATCY	3 cut(s)	538, 1894, 2182
BstYI	RGATCY	3 cut(s)	538, 1894, 2182
BstZ17I	GTATAC	1 cut(s)	1315
BsuRI	GGCC	5 cut(s)	776, 1651, 1695, 1764, 2339
BtgI	CCRYGG	1 cut(s)	1234
BtgZI	GCGATG	1 cut(s)	330
BtsCI	GGATG	6 cut(s)	370, 1435, 1610, 1780, 2042, 2353
BtsIMutI	CAGTG	2 cut(s)	810, 1359
BveI	ACCTGC	1 cut(s)	419
Cac8I	GCNNGC	6 cut(s)	259, 286, 370, 1165, 1708, 2341
CaiI	CAGNNNCTG	1 cut(s)	979
CciI	TCATGA	3 cut(s)	690, 1323, 1966
Cfr10I	RCCGGY	2 cut(s)	1317, 2339
Cfr13I	GGNCC	2 cut(s)	1649, 1713
Cfr42I	CCGCGG	1 cut(s)	1237
Csp6I	GTAC	9 cut(s)	20, 177, 948, 983, 1088, 1277, 1806, 1957, 2219
CspAI	ACCGGT	1 cut(s)	1317
CviQI	GTAC	9 cut(s)	20, 177, 948, 983, 1088, 1277, 1806, 1957, 2219
DdeI	CTNAG	8 cut(s)	216, 240, 385, 955, 1064, 1254, 1680, 2357
DpnI	GATC	8 cut(s)	302, 540, 1116, 1137, 1770, 1867, 1896, 2184
DpnII	GATC	8 cut(s)	300, 538, 1114, 1135, 1768, 1865, 1894, 2182
DraI	TTTAAA	1 cut(s)	513
DrdI	GACNNNNNNGTC	1 cut(s)	2113
DseDI	GACNNNNNNGTC	1 cut(s)	2113
EaeI	YGGCCR	1 cut(s)	774
Eam1104I	CTCTTC	5 cut(s)	474, 561, 1290, 1322, 2149
EarI	CTCTTC	5 cut(s)	474, 561, 1290, 1322, 2149
EciI	GGCGGA	2 cut(s)	1318, 1603
Eco130I	CCWWGG	2 cut(s)	879, 1336
Eco147I	AGGCCT	1 cut(s)	1695
Eco24I	GRGCYC	1 cut(s)	335
Eco32I	GATATC	2 cut(s)	309, 1942
Eco47I	GGWCC	1 cut(s)	1713
Eco57I	CTGAAG	2 cut(s)	627, 1030
Eco88I	CYCGRG	1 cut(s)	1168
Eco91I	GGTNACC	1 cut(s)	1418
EcoO65I	GGTNACC	1 cut(s)	1418
EcoRI	GAATTC	3 cut(s)	694, 839, 873
EcoRII	CCWGG	3 cut(s)	327, 2064, 2308
EcoRV	GATATC	2 cut(s)	309, 1942
EcoT14I	CCWWGG	2 cut(s)	879, 1336
EcoT22I	ATGCAT	1 cut(s)	370
EcoT38I	GRGCYC	1 cut(s)	335
ErhI	CCWWGG	2 cut(s)	879, 1336
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FaqI	GGGAC	3 cut(s)	663, 1051, 1889
FbaI	TGATCA	1 cut(s)	300
FblI	GTMKAC	2 cut(s)	1314, 2383
Fnu4HI	GCNGC	7 cut(s)	153, 705, 708, 1237, 1301, 1333, 1486
FokI	GGATG	6 cut(s)	377, 1422, 1597, 1787, 2029, 2360
FriOI	GRGCYC	1 cut(s)	335
Fsp4HI	GCNGC	7 cut(s)	153, 705, 708, 1237, 1301, 1333, 1486
FspBI	CTAG	9 cut(s)	684, 1119, 1245, 1376, 1440, 1628, 1899, 1908, 2400
GluI	GCNGC	7 cut(s)	153, 705, 708, 1237, 1301, 1333, 1486
GsaI	CCCAGC	2 cut(s)	149, 1650
HaeIII	GGCC	5 cut(s)	776, 1651, 1695, 1764, 2339
HapII	CCGG	4 cut(s)	1318, 1515, 1772, 2340
HincII	GTYRAC	1 cut(s)	2191
HindII	GTYRAC	1 cut(s)	2191
HindIII	AAGCTT	1 cut(s)	2138
HpaII	CCGG	4 cut(s)	1318, 1515, 1772, 2340
HphI	GGTGA	6 cut(s)	448, 593, 1040, 1124, 1944, 1986
Hpy166II	GTNNAC	5 cut(s)	58, 1015, 1315, 2191, 2384
Hpy8I	GTNNAC	5 cut(s)	58, 1015, 1315, 2191, 2384
HpyAV	CCTTC	4 cut(s)	511, 585, 1408, 1706
HpyCH4III	ACNGT	5 cut(s)	661, 1717, 1956, 2134, 2231
HpyCH4IV	ACGT	2 cut(s)	2263, 2271
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1491, 1569, 2297
HpyF3I	CTNAG	8 cut(s)	216, 240, 385, 955, 1064, 1254, 1680, 2357
HpySE526I	ACGT	2 cut(s)	2263, 2271
Kpn2I	TCCGGA	1 cut(s)	1771
KroI	GCCGGC	1 cut(s)	2339
KroNI	GCCGGC	1 cut(s)	2341
Ksp22I	TGATCA	1 cut(s)	300
KspI	CCGCGG	1 cut(s)	1237
Kzo9I	GATC	8 cut(s)	300, 538, 1114, 1135, 1768, 1865, 1894, 2182
LguI	GCTCTTC	2 cut(s)	1290, 1322
LmnI	GCTCC	3 cut(s)	338, 938, 2126
Lsp1109I	GCAGC	4 cut(s)	139, 694, 1319, 1497
LweI	GCATC	6 cut(s)	355, 981, 1511, 1619, 1627, 2226
MaeI	CTAG	9 cut(s)	684, 1119, 1245, 1376, 1440, 1628, 1899, 1908, 2400
MaeII	ACGT	2 cut(s)	2263, 2271
MaeIII	GTNAC	5 cut(s)	128, 581, 1418, 1675, 2264
MalI	GATC	8 cut(s)	302, 540, 1116, 1137, 1770, 1867, 1896, 2184
MbiI	CCGCTC	1 cut(s)	1300
MboI	GATC	8 cut(s)	300, 538, 1114, 1135, 1768, 1865, 1894, 2182
MfeI	CAATTG	2 cut(s)	1142, 1206
MflI	RGATCY	3 cut(s)	538, 1894, 2182
MhlI	GDGCHC	3 cut(s)	335, 1574, 1798
MlsI	TGGCCA	1 cut(s)	776
MluNI	TGGCCA	1 cut(s)	776
MlyI	GAGTC	1 cut(s)	1943
MmeI	TCCRAC	4 cut(s)	493, 516, 1981, 2313
Mox20I	TGGCCA	1 cut(s)	776
Mph1103I	ATGCAT	1 cut(s)	370
MroI	TCCGGA	1 cut(s)	1771
MroNI	GCCGGC	1 cut(s)	2339
MroXI	GAANNNNTTC	2 cut(s)	1229, 2060
MscI	TGGCCA	1 cut(s)	776
MslI	CAYNNNNRTG	5 cut(s)	1409, 1926, 1965, 2022, 2208
Msp20I	TGGCCA	1 cut(s)	776
MspA1I	CMGCKG	4 cut(s)	707, 1236, 1646, 2300
MspI	CCGG	4 cut(s)	1318, 1515, 1772, 2340
MspR9I	CCNGG	3 cut(s)	329, 2066, 2310
MunI	CAATTG	2 cut(s)	1142, 1206
Mva1269I	GAATGC	2 cut(s)	631, 2277
MvaI	CCWGG	3 cut(s)	329, 2066, 2310
MvnI	CGCG	1 cut(s)	1236
MwoI	GCNNNNNNNGC	3 cut(s)	1491, 1569, 2297
NaeI	GCCGGC	1 cut(s)	2341
NdeII	GATC	8 cut(s)	300, 538, 1114, 1135, 1768, 1865, 1894, 2182
NgoMIV	GCCGGC	1 cut(s)	2339
NlaIV	GGNNCC	3 cut(s)	334, 540, 1240
NmuCI	GTSAC	1 cut(s)	581
NsiI	ATGCAT	1 cut(s)	370
NspI	RCATGY	4 cut(s)	372, 575, 1044, 1570
PaeI	GCATGC	1 cut(s)	372
PagI	TCATGA	3 cut(s)	690, 1323, 1966
PasI	CCCWGGG	1 cut(s)	328
PceI	AGGCCT	1 cut(s)	1695
PciI	ACATGT	2 cut(s)	571, 1566
PciSI	GCTCTTC	2 cut(s)	1290, 1322
PctI	GAATGC	2 cut(s)	631, 2277
PdiI	GCCGGC	1 cut(s)	2341
PdmI	GAANNNNTTC	2 cut(s)	1229, 2060
PfeI	GAWTC	9 cut(s)	91, 166, 713, 824, 1265, 1458, 2061, 2110, 2377
PflMI	CCANNNNNTGG	1 cut(s)	1844
PinAI	ACCGGT	1 cut(s)	1317
PkrI	GCNGC	7 cut(s)	154, 706, 709, 1238, 1302, 1334, 1487
PleI	GAGTC	1 cut(s)	1942
PpsI	GAGTC	1 cut(s)	1942
PscI	ACATGT	2 cut(s)	571, 1566
PshBI	ATTAAT	2 cut(s)	1151, 1748
Psp1406I	AACGTT	2 cut(s)	2263, 2271
Psp6I	CCWGG	3 cut(s)	327, 2064, 2308
PspEI	GGTNACC	1 cut(s)	1418
PspFI	CCCAGC	2 cut(s)	145, 1646
PspGI	CCWGG	3 cut(s)	327, 2064, 2308
PspN4I	GGNNCC	3 cut(s)	334, 540, 1240
PspPI	GGNCC	2 cut(s)	1649, 1713
PstI	CTGCAG	2 cut(s)	1479, 1487
PstNI	CAGNNNCTG	1 cut(s)	979
PsuI	RGATCY	3 cut(s)	538, 1894, 2182
PvuII	CAGCTG	2 cut(s)	1646, 2300
RsaI	GTAC	9 cut(s)	21, 178, 949, 984, 1089, 1278, 1807, 1958, 2220
RsaNI	GTAC	9 cut(s)	20, 177, 948, 983, 1088, 1277, 1806, 1957, 2219
RseI	CAYNNNNRTG	5 cut(s)	1409, 1926, 1965, 2022, 2208
SacII	CCGCGG	1 cut(s)	1237
SapI	GCTCTTC	2 cut(s)	1290, 1322
SatI	GCNGC	7 cut(s)	153, 705, 708, 1237, 1301, 1333, 1486
Sau3AI	GATC	8 cut(s)	300, 538, 1114, 1135, 1768, 1865, 1894, 2182
Sau96I	GGNCC	2 cut(s)	1649, 1713
SchI	GAGTC	1 cut(s)	1943
ScrFI	CCNGG	3 cut(s)	329, 2066, 2310
SduI	GDGCHC	3 cut(s)	335, 1574, 1798
SfaNI	GCATC	6 cut(s)	355, 981, 1511, 1619, 1627, 2226
SfcI	CTRYAG	4 cut(s)	1475, 1483, 1545, 1641
Sfr303I	CCGCGG	1 cut(s)	1237
SgrBI	CCGCGG	1 cut(s)	1237
SinI	GGWCC	1 cut(s)	1713
SmiMI	CAYNNNNRTG	5 cut(s)	1409, 1926, 1965, 2022, 2208
SmlI	CTYRAG	4 cut(s)	1388, 1489, 1756, 2047
SmoI	CTYRAG	4 cut(s)	1388, 1489, 1756, 2047
SphI	GCATGC	1 cut(s)	372
SseBI	AGGCCT	1 cut(s)	1695
SsiI	CCGC	8 cut(s)	705, 1234, 1236, 1300, 1303, 1605, 1614, 1733
SspI	AATATT	1 cut(s)	606
SspMI	CTAG	9 cut(s)	684, 1119, 1245, 1376, 1440, 1628, 1899, 1908, 2400
StuI	AGGCCT	1 cut(s)	1695
StyD4I	CCNGG	3 cut(s)	327, 2064, 2308
StyI	CCWWGG	2 cut(s)	879, 1336
TaaI	ACNGT	5 cut(s)	661, 1717, 1956, 2134, 2231
TaiI	ACGT	2 cut(s)	2266, 2274
TaqI	TCGA	2 cut(s)	208, 489
TatI	WGTACW	3 cut(s)	19, 1276, 2218
TauI	GCSGC	3 cut(s)	707, 1239, 1303
TfiI	GAWTC	9 cut(s)	91, 166, 713, 824, 1265, 1458, 2061, 2110, 2377
TscAI	CASTG	2 cut(s)	810, 1359
TseFI	GTSAC	1 cut(s)	581
TseI	GCWGC	4 cut(s)	152, 707, 1332, 1485
Tsp45I	GTSAC	1 cut(s)	581
TspGWI	ACGGA	1 cut(s)	1011
TspRI	CASTG	2 cut(s)	810, 1359
Van91I	CCANNNNNTGG	1 cut(s)	1844
VpaK11BI	GGWCC	1 cut(s)	1713
VspI	ATTAAT	2 cut(s)	1151, 1748
XapI	RAATTY	6 cut(s)	455, 635, 694, 829, 839, 873
XbaI	TCTAGA	1 cut(s)	1907
XceI	RCATGY	4 cut(s)	372, 575, 1044, 1570
XmiI	GTMKAC	2 cut(s)	1314, 2383
XmnI	GAANNNNTTC	2 cut(s)	1229, 2060
XspI	CTAG	9 cut(s)	684, 1119, 1245, 1376, 1440, 1628, 1899, 1908, 2400
Zsp2I	ATGCAT	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.