Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Forward (+)

1984577 .. 1987765

Gene Structure 3189 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000560

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2298 bp

ATGGGTGTCTTCATCTTCAGTTACACTTTCATAATGCTAACTGTTGCGAAACGGGAAATGCATCGTTATGCCACACTCATAGAACAAAGGGAGAAAACTGAGCAAGCTGAGAGAAAGAGCATGAGGAAAAGTGATGCATTTGCTAAAGCAAGCCATGACATTCGTGCCGCGCTTGCTGGAATTATTAGTTGGATCAACTTCTGTAAAGATGATATTCATGATGCGCTTGATCTACATGCCACAAATGCTGGAACTACCCGGCATTCTGAAATAGAGACGATCTTAACAAAAATAGATTCCAACTTAAAAAGACTGGATGTTCATGCAGAAGATCTTTTAGGTATATTGAACTCTGTTCTTGATAAAAGCAAAATTGAAGCAGGTAAGATGGTACTTGAAAATGAAGAATTTGATGTAGCTCAGCTTGTTGAAGAGGTAGTGGATTTGTTTCTTCCAACAGCATCAATGAAGGGATTAGAGGTGGTGTTGGATCCTTGTGATGGATCTGTAATAAAGTTTGCACGTGTGAGAGGTGACAGGGGAAGGCTTAAGCAGATACTAAACAATTTGCTAAGCAATGCTGTTAAATTTACGTCAGAAGGGCAAATCACAATCCGCACCTGGGTCCGAAAACCAAGTTTTAAGAAGTCAATAACTGCTTCTCGTGAGCGGACTAATGGTTTCTTGAAACAGTTCTGGTGCTTCTTTAATTACAAGAACATGAACAATGATGACAAGGAAGTAGTGGATGGTTCTCAACGTGATCCAAATGCTTTGGAATTTGTTTTTGAGGTGGATGATACTGGTAGGGGAATTCTTAAGGAGAGGCAAAAATCGGTGTTCGAGGACTATGTCCAAGTAAAAGAAAAAGCACTTGGAGAAGGTGGTACCGGCTTAGGACTGGGAATTGTTCAATCTCTGGTGCGTTTGATGCATGGAGAAATAGGAATTGTGGACAAGGAGATTGGGGAAAGAGGGACATGCTTCAGGTTCAATGTACTGCTAAGTACTATTAATGCCTGTGAGGATAGCATAAAAGTAGAACCAGACATTGAAATGGGAATTAGTGACTTAAACCCTAGTCCCGGGCCGACTGTCAATCAAACACCAATTGCAAGCCCCAAGTTGAACATTCGCAGTACCACCGCGAGTCCTAAGGTCGAGGGATCCTATGTTGTAATGCTTATTAAAAATGTAGAGCGCAGGAGGGTTATACAGAAGTTTATGGAGAGACTTGGGATAAAAGTATCAGTAGCAGAACGATGGGAACAACTTGCTCGTACTCTCCAGAACATAAAAAACAAGAAGGTTTACCATTCTCAACATAATTCCATATCAGGAATACCCGATTTGGGTCTGCAGGATTGCTTGATCAAATCCGCCTCATGCAACTCCAACTTCAGCTTTAATAGAGCAAAGGAAGCGTCTTTGATGAGTTCCATGGATGGATCAACAGATAACAACATACTTTCTCTCTTTCATAAGAAGAGTAGTAGCAGTAATCTTCGTGGAGCATATGATCGCTTCGTAATGCTACTTATTGATACTACAGGTGGACCACTCCCAGAACTATGCAAGATTGTGAATGATTTCAAAAGAGGCCTCCAATATGGTTGGTACTGCAAGGTTGTTTGGTTATCTAGTCCATTTACTCATAGCGATTTAAGCTTCAACAGAGATATGTTGGATGGCGACGATGTTATCAAACACAAGCCTCTACATGGTACTTGTCTATATGAAGTTGTAAGACTTCTTCCAGAGTGTGGGGGCGCATTACCAAAGAGATCATCAGGTCAGGTTGCATCAAAACTAGTTTCCACAGCTCTTGGTTCATCAAGAAATCGGTACATTCATACCGATGATGACAACTCCTCTGACCAAATAGTACAAGAGAGTAATTCACCAACTCTTCGACATCATCAATCTCCCAATAATATTGGCTCCAAATCAGCAAGTCAATCAGCCCCAGCAGACCATGGCAACAAACCCTTGACTGGGAAGAAAATCTTGGTTGCGGAGGACACAGCATCGTTACGCATGGTGGCTATGCAGGTTTTGTCACGATTGGGTGCAACTGTGAAGCTTTGTGAAAATGGAAGAGAAGCTTTGGATCTGATTCGCAATGATCTACTCAATCAAAGGAAACATGTCTATGACTATATACTGATGGATTGCCAGATACAATCGGTGAAATGTAAATCATTTATAGAAGCAGATTTGTCTGTCATGAATGGATGGTGTAAGGTTCACCTGAGCAATCCCATGAGGTTGAGAATCACAAAGGACCTTGGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

766

Amino Acids

85.58

Weight (kDa)

8.68

Isoelectric Point (pI)

38.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	260 - 333	3e-12	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	371, 2041
Acc65I	GGTACC	1 cut(s)	887
AccB1I	GGYRCC	1 cut(s)	887
AccB7I	CCANNNNNTGG	1 cut(s)	1763
AccBSI	CCGCTC	1 cut(s)	670
AccII	CGCG	2 cut(s)	170, 1148
AciI	CCGC	6 cut(s)	168, 616, 670, 1146, 1380, 2015
AclWI	GGATC	9 cut(s)	200, 485, 498, 511, 758, 1161, 1174, 1456, 2118
AcoI	YGGCCR	1 cut(s)	2290
AcsI	RAATTY	4 cut(s)	407, 587, 779, 813
AcuI	CTGAAG	2 cut(s)	970, 1384
AcvI	CACGTG	1 cut(s)	524
AfiI	CCNNNNNNNGG	8 cut(s)	500, 622, 1085, 1352, 1721, 1763, 1994, 1995
AflII	CTTAAG	2 cut(s)	548, 818
AflIII	ACRYGT	2 cut(s)	523, 2146
AhlI	ACTAGT	1 cut(s)	1810
AjnI	CCWGG	1 cut(s)	620
AjuI	GAANNNNNNNTTGG	6 cut(s)	172, 204, 858, 890, 1991, 2023
AluBI	AGCT	8 cut(s)	107, 419, 424, 1404, 1668, 1823, 2083, 2105
AluI	AGCT	8 cut(s)	107, 419, 424, 1404, 1668, 1823, 2083, 2105
Alw26I	GTCTC	2 cut(s)	269, 1225
AlwI	GGATC	9 cut(s)	200, 485, 498, 511, 758, 1161, 1174, 1456, 2118
Ama87I	CYCGRG	1 cut(s)	1085
AoxI	GGCC	3 cut(s)	1088, 1600, 2290
ApoI	RAATTY	4 cut(s)	407, 587, 779, 813
ArsI	GACNNNNNNTTYG	2 cut(s)	1409, 1441
AseI	ATTAAT	1 cut(s)	1014
Asp700I	GAANNNNTTC	2 cut(s)	692, 1589
Asp718I	GGTACC	1 cut(s)	887
AspLEI	GCGC	4 cut(s)	172, 226, 1203, 1772
AspS9I	GGNCC	4 cut(s)	625, 1088, 1556, 2284
AsuC2I	CCSGG	3 cut(s)	259, 1086, 1087
AsuHPI	GGTGA	4 cut(s)	545, 1893, 2200, 2240
AvaI	CYCGRG	1 cut(s)	1085
AvaII	GGWCC	3 cut(s)	625, 1556, 2284
AxyI	CCTNAGG	1 cut(s)	1155
BamHI	GGATCC	2 cut(s)	490, 1166
BanI	GGYRCC	1 cut(s)	887
BarI	GAAGNNNNNNTAC	2 cut(s)	1737, 1769
BauI	CACGAG	1 cut(s)	663
BbrPI	CACGTG	1 cut(s)	524
BccI	CCATC	8 cut(s)	382, 494, 743, 1257, 1439, 1682, 2161, 2229
BciT130I	CCWGG	1 cut(s)	622
BclI	TGATCA	1 cut(s)	1371
BcnI	CCSGG	3 cut(s)	259, 1086, 1087
BcoDI	GTCTC	2 cut(s)	269, 1225
BcuI	ACTAGT	1 cut(s)	1810
BfaI	CTAG	3 cut(s)	1080, 1641, 1811
BfmI	CTRYAG	2 cut(s)	1358, 1548
BfrI	CTTAAG	2 cut(s)	548, 818
BfuAI	ACCTGC	2 cut(s)	371, 2041
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	1 cut(s)	168
BlpI	GCTNAGC	2 cut(s)	420, 572
BlsI	GCNGC	1 cut(s)	169
BmcAI	AGTACT	1 cut(s)	1009
Bme1390I	CCNGG	4 cut(s)	259, 622, 1086, 1087
Bme18I	GGWCC	3 cut(s)	625, 1556, 2284
BmeT110I	CYCGRG	1 cut(s)	1085
BmgT120I	GGNCC	4 cut(s)	625, 1088, 1556, 2284
BmiI	GGNNCC	5 cut(s)	492, 626, 889, 1168, 1942
BmrFI	CCNGG	4 cut(s)	259, 622, 1086, 1087
BmrI	ACTGGG	2 cut(s)	911, 2004
BmsI	GCATC	7 cut(s)	70, 124, 211, 470, 921, 1811, 2036
BmuI	ACTGGG	2 cut(s)	911, 2004
BpmI	CTGGAG	1 cut(s)	1271
Bpu10I	CCTNAGC	2 cut(s)	895, 2252
Bpu1102I	GCTNAGC	2 cut(s)	420, 572
BpuMI	CCSGG	3 cut(s)	259, 1086, 1087
BsaAI	YACGTR	1 cut(s)	524
BsaJI	CCNNGG	5 cut(s)	621, 1085, 1440, 1975, 2287
Bsc4I	CCNNNNNNNGG	8 cut(s)	500, 622, 1085, 1352, 1721, 1763, 1994, 1995
Bse118I	RCCGGY	1 cut(s)	890
Bse1I	ACTGG	4 cut(s)	318, 808, 906, 1999
Bse21I	CCTNAGG	1 cut(s)	1155
Bse3DI	GCAATG	2 cut(s)	583, 2128
BseBI	CCWGG	1 cut(s)	622
BseDI	CCNNGG	5 cut(s)	621, 1085, 1440, 1975, 2287
BseGI	GGATG	6 cut(s)	322, 754, 802, 1450, 1693, 2240
BseLI	CCNNNNNNNGG	8 cut(s)	500, 622, 1085, 1352, 1721, 1763, 1994, 1995
BseMI	GCAATG	2 cut(s)	583, 2128
BseMII	CTCAG	4 cut(s)	90, 99, 434, 2243
BseNI	ACTGG	4 cut(s)	318, 808, 906, 1999
BseRI	GAGGAG	1 cut(s)	1861
BseYI	CCCAGC	1 cut(s)	1966
Bsh1236I	CGCG	2 cut(s)	170, 1148
BshFI	GGCC	3 cut(s)	1090, 1602, 2292
BshNI	GGYRCC	1 cut(s)	887
BsiHKCI	CYCGRG	1 cut(s)	1085
BsiSI	CCGG	3 cut(s)	259, 891, 1086
BslFI	GGGAC	2 cut(s)	991, 1068
BslI	CCNNNNNNNGG	8 cut(s)	500, 622, 1085, 1352, 1721, 1763, 1994, 1995
BsmAI	GTCTC	2 cut(s)	269, 1225
BsmBI	CGTCTC	1 cut(s)	269
BsmFI	GGGAC	2 cut(s)	991, 1068
BsmI	GAATGC	1 cut(s)	262
BsnI	GGCC	3 cut(s)	1090, 1602, 2292
BsoBI	CYCGRG	1 cut(s)	1085
Bsp1720I	GCTNAGC	2 cut(s)	420, 572
Bsp19I	CCATGG	2 cut(s)	1440, 1975
BspACI	CCGC	6 cut(s)	168, 616, 670, 1146, 1380, 2015
BspANI	GGCC	3 cut(s)	1090, 1602, 2292
BspCNI	CTCAG	4 cut(s)	91, 100, 433, 2244
BspFNI	CGCG	2 cut(s)	170, 1148
BspHI	TCATGA	2 cut(s)	217, 2226
BspLI	GGNNCC	5 cut(s)	492, 626, 889, 1168, 1942
BspMAI	CTGCAG	1 cut(s)	1362
BspMI	ACCTGC	2 cut(s)	371, 2041
BspPI	GGATC	9 cut(s)	200, 485, 498, 511, 758, 1161, 1174, 1456, 2118
BspT107I	GGYRCC	1 cut(s)	887
BspTI	CTTAAG	2 cut(s)	548, 818
BsrBI	CCGCTC	1 cut(s)	670
BsrDI	GCAATG	2 cut(s)	583, 2128
BsrFI	RCCGGY	1 cut(s)	890
BsrI	ACTGG	4 cut(s)	318, 808, 906, 1999
BssAI	RCCGGY	1 cut(s)	890
BssECI	CCNNGG	5 cut(s)	621, 1085, 1440, 1975, 2287
BssSI	CACGAG	1 cut(s)	663
BssT1I	CCWWGG	3 cut(s)	1440, 1975, 2287
Bst2BI	CACGAG	1 cut(s)	663
Bst2UI	CCWGG	1 cut(s)	622
Bst4CI	ACNGT	4 cut(s)	43, 693, 1096, 2077
Bst6I	CTCTTC	4 cut(s)	426, 1481, 1914, 2092
BstAFI	CTTAAG	2 cut(s)	548, 818
BstBAI	YACGTR	1 cut(s)	524
BstC8I	GCNNGC	4 cut(s)	105, 151, 174, 1117
BstDEI	CTNAG	8 cut(s)	99, 108, 420, 572, 895, 1004, 1155, 2252
BstDSI	CCRYGG	2 cut(s)	1440, 1975
BstF5I	GGATG	6 cut(s)	322, 754, 802, 1450, 1693, 2240
BstFNI	CGCG	2 cut(s)	170, 1148
BstHHI	GCGC	4 cut(s)	172, 226, 1203, 1772
BstMAI	GTCTC	2 cut(s)	269, 1225
BstMWI	GCNNNNNNNGC	5 cut(s)	173, 245, 931, 1421, 1665
BstNI	CCWGG	1 cut(s)	622
BstNSI	RCATGY	3 cut(s)	239, 984, 2150
BstSCI	CCNGG	4 cut(s)	257, 620, 1084, 1085
BstSFI	CTRYAG	2 cut(s)	1358, 1548
BstUI	CGCG	2 cut(s)	170, 1148
BstX2I	RGATCY	5 cut(s)	331, 490, 503, 1166, 2110
BstYI	RGATCY	5 cut(s)	331, 490, 503, 1166, 2110
Bsu36I	CCTNAGG	1 cut(s)	1155
BsuRI	GGCC	3 cut(s)	1090, 1602, 2292
BtgI	CCRYGG	2 cut(s)	1440, 1975
BtsCI	GGATG	6 cut(s)	322, 754, 802, 1450, 1693, 2240
BveI	ACCTGC	2 cut(s)	371, 2041
Cac8I	GCNNGC	4 cut(s)	105, 151, 174, 1117
CciI	TCATGA	2 cut(s)	217, 2226
CfoI	GCGC	4 cut(s)	172, 226, 1203, 1772
Cfr10I	RCCGGY	1 cut(s)	890
Cfr13I	GGNCC	4 cut(s)	625, 1088, 1556, 2284
Cfr9I	CCCGGG	1 cut(s)	1085
CseI	GACGC	1 cut(s)	1413
CspCI	CAANNNNNGTGG	2 cut(s)	1807, 1842
DdeI	CTNAG	8 cut(s)	99, 108, 420, 572, 895, 1004, 1155, 2252
EaeI	YGGCCR	1 cut(s)	2290
Eam1104I	CTCTTC	4 cut(s)	426, 1481, 1914, 2092
EarI	CTCTTC	4 cut(s)	426, 1481, 1914, 2092
EciI	GGCGGA	1 cut(s)	1369
Eco130I	CCWWGG	3 cut(s)	1440, 1975, 2287
Eco147I	AGGCCT	1 cut(s)	1602
Eco47I	GGWCC	3 cut(s)	625, 1556, 2284
Eco57I	CTGAAG	2 cut(s)	970, 1384
Eco72I	CACGTG	1 cut(s)	524
Eco81I	CCTNAGG	1 cut(s)	1155
Eco88I	CYCGRG	1 cut(s)	1085
EcoO109I	RGGNCCY	1 cut(s)	2284
EcoRI	GAATTC	1 cut(s)	813
EcoRII	CCWGG	1 cut(s)	620
EcoT14I	CCWWGG	3 cut(s)	1440, 1975, 2287
EcoT22I	ATGCAT	3 cut(s)	63, 139, 936
ErhI	CCWWGG	3 cut(s)	1440, 1975, 2287
Esp3I	CGTCTC	1 cut(s)	269
FalI	AAGNNNNNCTT	4 cut(s)	1991, 2023, 2089, 2121
FaqI	GGGAC	2 cut(s)	991, 1068
FauNDI	CATATG	1 cut(s)	1516
FbaI	TGATCA	1 cut(s)	1371
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	6 cut(s)	329, 761, 809, 1457, 1700, 2247
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	3 cut(s)	1080, 1641, 1811
GlaI	GCGC	4 cut(s)	171, 225, 1202, 1771
GluI	GCNGC	1 cut(s)	168
GsaI	CCCAGC	1 cut(s)	1970
GsuI	CTGGAG	1 cut(s)	1271
HaeIII	GGCC	3 cut(s)	1090, 1602, 2292
HapII	CCGG	3 cut(s)	259, 891, 1086
HgaI	GACGC	1 cut(s)	1413
HhaI	GCGC	4 cut(s)	172, 226, 1203, 1772
Hin6I	GCGC	4 cut(s)	170, 224, 1201, 1770
HinP1I	GCGC	4 cut(s)	170, 224, 1201, 1770
HindIII	AAGCTT	3 cut(s)	1666, 2081, 2103
HinfI	GANTC	4 cut(s)	296, 1150, 2116, 2274
HpaII	CCGG	3 cut(s)	259, 891, 1086
HphI	GGTGA	4 cut(s)	545, 1893, 2200, 2240
Hpy166II	GTNNAC	4 cut(s)	955, 1312, 1556, 2248
Hpy188I	TCNGA	5 cut(s)	268, 598, 629, 1876, 2115
Hpy8I	GTNNAC	4 cut(s)	955, 1312, 1556, 2248
Hpy99I	CGWCG	1 cut(s)	1697
HpyAV	CCTTC	5 cut(s)	463, 537, 593, 875, 1300
HpyCH4III	ACNGT	4 cut(s)	43, 693, 1096, 2077
HpyCH4IV	ACGT	3 cut(s)	523, 593, 760
HpyF10VI	GCNNNNNNNGC	5 cut(s)	173, 245, 931, 1421, 1665
HpyF3I	CTNAG	8 cut(s)	99, 108, 420, 572, 895, 1004, 1155, 2252
HpySE526I	ACGT	3 cut(s)	523, 593, 760
HspAI	GCGC	4 cut(s)	170, 224, 1201, 1770
KpnI	GGTACC	1 cut(s)	891
Ksp22I	TGATCA	1 cut(s)	1371
LmnI	GCTCC	2 cut(s)	1511, 1946
LweI	GCATC	7 cut(s)	70, 124, 211, 470, 921, 1811, 2036
MaeI	CTAG	3 cut(s)	1080, 1641, 1811
MaeII	ACGT	3 cut(s)	523, 593, 760
MaeIII	GTNAC	5 cut(s)	20, 533, 1067, 2031, 2058
MbiI	CCGCTC	1 cut(s)	670
MfeI	CAATTG	1 cut(s)	1110
MflI	RGATCY	5 cut(s)	331, 490, 503, 1166, 2110
MlyI	GAGTC	1 cut(s)	1159
MmeI	TCCRAC	6 cut(s)	170, 324, 468, 479, 1419, 1665
Mph1103I	ATGCAT	3 cut(s)	63, 139, 936
MroXI	GAANNNNTTC	2 cut(s)	692, 1589
MslI	CAYNNNNRTG	4 cut(s)	66, 1055, 1857, 2151
MspCI	CTTAAG	2 cut(s)	548, 818
MspI	CCGG	3 cut(s)	259, 891, 1086
MspR9I	CCNGG	4 cut(s)	259, 622, 1086, 1087
MunI	CAATTG	1 cut(s)	1110
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	622
MvnI	CGCG	2 cut(s)	170, 1148
MwoI	GCNNNNNNNGC	5 cut(s)	173, 245, 931, 1421, 1665
NciI	CCSGG	3 cut(s)	259, 1086, 1087
NcoI	CCATGG	2 cut(s)	1440, 1975
NdeI	CATATG	1 cut(s)	1516
NlaIV	GGNNCC	5 cut(s)	492, 626, 889, 1168, 1942
NmuCI	GTSAC	3 cut(s)	533, 1067, 2058
NsiI	ATGCAT	3 cut(s)	63, 139, 936
NspI	RCATGY	3 cut(s)	239, 984, 2150
PagI	TCATGA	2 cut(s)	217, 2226
PceI	AGGCCT	1 cut(s)	1602
PciI	ACATGT	1 cut(s)	2146
PctI	GAATGC	1 cut(s)	262
PdmI	GAANNNNTTC	2 cut(s)	692, 1589
PfeI	GAWTC	3 cut(s)	296, 2116, 2274
PflFI	GACNNNGTC	1 cut(s)	851
PflMI	CCANNNNNTGG	1 cut(s)	1763
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	1 cut(s)	1158
PmaCI	CACGTG	1 cut(s)	524
PmlI	CACGTG	1 cut(s)	524
PpsI	GAGTC	1 cut(s)	1158
Ppu21I	YACGTR	1 cut(s)	524
PpuMI	RGGWCCY	1 cut(s)	2284
PscI	ACATGT	1 cut(s)	2146
PshBI	ATTAAT	1 cut(s)	1014
Psp5II	RGGWCCY	1 cut(s)	2284
Psp6I	CCWGG	1 cut(s)	620
PspCI	CACGTG	1 cut(s)	524
PspFI	CCCAGC	1 cut(s)	1966
PspGI	CCWGG	1 cut(s)	620
PspN4I	GGNNCC	5 cut(s)	492, 626, 889, 1168, 1942
PspPI	GGNCC	4 cut(s)	625, 1088, 1556, 2284
PspPPI	RGGWCCY	1 cut(s)	2284
PstI	CTGCAG	1 cut(s)	1362
PsuI	RGATCY	5 cut(s)	331, 490, 503, 1166, 2110
PsyI	GACNNNGTC	1 cut(s)	851
RseI	CAYNNNNRTG	4 cut(s)	66, 1055, 1857, 2151
SatI	GCNGC	1 cut(s)	168
Sau96I	GGNCC	4 cut(s)	625, 1088, 1556, 2284
ScaI	AGTACT	1 cut(s)	1009
SchI	GAGTC	1 cut(s)	1159
ScrFI	CCNGG	4 cut(s)	259, 622, 1086, 1087
SfaNI	GCATC	7 cut(s)	70, 124, 211, 470, 921, 1811, 2036
SfcI	CTRYAG	2 cut(s)	1358, 1548
SinI	GGWCC	3 cut(s)	625, 1556, 2284
SmaI	CCCGGG	1 cut(s)	1087
SmiMI	CAYNNNNRTG	4 cut(s)	66, 1055, 1857, 2151
SmlI	CTYRAG	2 cut(s)	548, 818
SmoI	CTYRAG	2 cut(s)	548, 818
SpeI	ACTAGT	1 cut(s)	1810
SseBI	AGGCCT	1 cut(s)	1602
SsiI	CCGC	6 cut(s)	168, 616, 670, 1146, 1380, 2015
SspI	AATATT	1 cut(s)	1936
SspMI	CTAG	3 cut(s)	1080, 1641, 1811
StuI	AGGCCT	1 cut(s)	1602
StyD4I	CCNGG	4 cut(s)	257, 620, 1084, 1085
StyI	CCWWGG	3 cut(s)	1440, 1975, 2287
TaaI	ACNGT	4 cut(s)	43, 693, 1096, 2077
TaiI	ACGT	3 cut(s)	526, 596, 763
TaqI	TCGA	3 cut(s)	843, 1161, 1912
TatI	WGTACW	3 cut(s)	997, 1007, 1885
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	3 cut(s)	296, 2116, 2274
TseFI	GTSAC	3 cut(s)	533, 1067, 2058
Tsp45I	GTSAC	3 cut(s)	533, 1067, 2058
TspMI	CCCGGG	1 cut(s)	1085
Tth111I	GACNNNGTC	1 cut(s)	851
Van91I	CCANNNNNTGG	1 cut(s)	1763
Vha464I	CTTAAG	2 cut(s)	548, 818
VpaK11BI	GGWCC	3 cut(s)	625, 1556, 2284
VspI	ATTAAT	1 cut(s)	1014
XapI	RAATTY	4 cut(s)	407, 587, 779, 813
XceI	RCATGY	3 cut(s)	239, 984, 2150
XmaI	CCCGGG	1 cut(s)	1085
XmnI	GAANNNNTTC	2 cut(s)	692, 1589
XspI	CTAG	3 cut(s)	1080, 1641, 1811
ZrmI	AGTACT	1 cut(s)	1009
Zsp2I	ATGCAT	3 cut(s)	63, 139, 936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.