Prupe.8G270900_v2.0.a1

Multidrug resistance protein ABC transporter family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000934
Physical Location & Seq
Reverse (-)
22470530 .. 22471117
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G270900.1

Sequence Viewer

Length: 588 bp
ATGGGTAATTCCATCTCGCACAAGCAATTACATGCCAGCGCCACCGGAAAAGTGATATTGTCGAATGGGTCGGTGCATCAGTTCAACAAGCCCCTAACAGTTGCTGAGCTCATGCTAGAGCACCCACAACAAGTGGTTGTCGAATTCGGAGCGGCTGTCTCCGAAAAAAGGCCAACCCCATTGCCTGCGGATATGAAGCTAGACAAGAAAAAAATTTACTTAATGCTGCCAATGAAGCGAGGGAAACCAGTCTCTTTGTCATCCCAAGAGATTCACGGTGCTGTTTTAAGTGCAAATTTGGTTTTGCGATCAAGGTCACTATTGTCATCTTCAAGGTTTTTACCTTTCTTTGCTAGGATATGCCCAGCAGGCCATCCTGGACAAGCTTGTGCTCTGCCAAACAAGGAATCTTGTGCGGAGAGGACGTCGAATTCGAAGTACATGCCACAGTTTGATCTGCCGGAAGATTTGGACGCGAGACCAGAATATTTGAGTAGGCAGTTTTCAGGCAAGGGGACTTGGAAACCAAATTTGGATACCATTAAGGAGAAGAAGGTTGACAAGAAGAAATCTCATTGGTTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

196

Amino Acids

21.72

Weight (kDa)

9.76

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 428
AccBSI CCGCTC 1 cut(s) 152
AccII CGCG 1 cut(s) 476
AciI CCGC 3 cut(s) 152, 188, 416
AcsI RAATTY 5 cut(s) 143, 213, 295, 430, 529
AcyI GRCGYC 1 cut(s) 425
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 2 cut(s) 85, 333
AjnI CCWGG 1 cut(s) 376
AjuI GAANNNNNNNTTGG 2 cut(s) 515, 547
AluBI AGCT 3 cut(s) 109, 199, 386
AluI AGCT 3 cut(s) 109, 199, 386
Alw21I GWGCWC 3 cut(s) 111, 123, 394
Alw26I GTCTC 3 cut(s) 163, 256, 472
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 2 cut(s) 170, 370
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 5 cut(s) 143, 213, 295, 430, 529
ArsI GACNNNNNNTTYG 2 cut(s) 415, 447
AspLEI GCGC 1 cut(s) 41
AsuII TTCGAA 1 cut(s) 434
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 3 cut(s) 111, 123, 394
BbvI GCAGC 1 cut(s) 213
BccI CCATC 2 cut(s) 20, 381
BcgI CGANNNNNNTGC 2 cut(s) 424, 458
BciT130I CCWGG 1 cut(s) 378
BciVI GTATCC 1 cut(s) 529
BcoDI GTCTC 3 cut(s) 163, 256, 472
BfaI CTAG 3 cut(s) 116, 200, 354
BfoI RGCGCY 1 cut(s) 42
BfuI GTATCC 1 cut(s) 529
BglI GCCNNNNNGGC 1 cut(s) 369
BisI GCNGC 2 cut(s) 153, 227
BlpI GCTNAGC 1 cut(s) 105
BlsI GCNGC 2 cut(s) 154, 228
Bme1390I CCNGG 1 cut(s) 378
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 1 cut(s) 85
Bpu1102I GCTNAGC 1 cut(s) 105
Bpu14I TTCGAA 1 cut(s) 434
BsaHI GRCGYC 1 cut(s) 425
BsaI GGTCTC 1 cut(s) 472
BsaWI WCCGGW 1 cut(s) 44
BsaXI ACNNNNNCTCC 4 cut(s) 141, 171, 410, 440
Bsc4I CCNNNNNNNGG 1 cut(s) 168
Bse1I ACTGG 1 cut(s) 248
Bse3DI GCAATG 1 cut(s) 179
BseBI CCWGG 1 cut(s) 378
BseGI GGATG 2 cut(s) 260, 373
BseLI CCNNNNNNNGG 1 cut(s) 168
BseMI GCAATG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 213
BseYI CCCAGC 1 cut(s) 364
Bsh1236I CGCG 1 cut(s) 476
BshFI GGCC 2 cut(s) 172, 372
BsiHKAI GWGCWC 3 cut(s) 111, 123, 394
BsiSI CCGG 2 cut(s) 45, 461
BslFI GGGAC 1 cut(s) 529
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 3 cut(s) 163, 256, 472
BsmFI GGGAC 1 cut(s) 529
BsnI GGCC 2 cut(s) 172, 372
Bso31I GGTCTC 1 cut(s) 472
Bsp119I TTCGAA 1 cut(s) 434
Bsp1286I GDGCHC 3 cut(s) 111, 123, 394
Bsp143I GATC 2 cut(s) 308, 454
Bsp1720I GCTNAGC 1 cut(s) 105
BspACI CCGC 3 cut(s) 152, 188, 416
BspANI GGCC 2 cut(s) 172, 372
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 1 cut(s) 476
BspT104I TTCGAA 1 cut(s) 434
BspTNI GGTCTC 1 cut(s) 472
BsrBI CCGCTC 1 cut(s) 152
BsrDI GCAATG 1 cut(s) 179
BsrI ACTGG 1 cut(s) 248
BssMI GATC 2 cut(s) 308, 454
BssNI GRCGYC 1 cut(s) 425
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 3 cut(s) 100, 278, 450
BstACI GRCGYC 1 cut(s) 425
BstBI TTCGAA 1 cut(s) 434
BstC8I GCNNGC 3 cut(s) 37, 186, 370
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 260, 373
BstFNI CGCG 1 cut(s) 476
BstH2I RGCGCY 1 cut(s) 42
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 2 cut(s) 311, 457
BstMAI GTCTC 3 cut(s) 163, 256, 472
BstMBI GATC 2 cut(s) 308, 454
BstMWI GCNNNNNNNGC 2 cut(s) 235, 369
BstNI CCWGG 1 cut(s) 378
BstNSI RCATGY 2 cut(s) 35, 445
BstSCI CCNGG 1 cut(s) 376
BstUI CGCG 1 cut(s) 476
BstV1I GCAGC 1 cut(s) 213
BsuI GTATCC 1 cut(s) 529
BsuRI GGCC 2 cut(s) 172, 372
BtsCI GGATG 2 cut(s) 260, 373
Cac8I GCNNGC 3 cut(s) 37, 186, 370
CaiI CAGNNNCTG 1 cut(s) 104
CfoI GCGC 1 cut(s) 41
CseI GACGC 1 cut(s) 482
Csp6I GTAC 1 cut(s) 439
CviAII CATG 3 cut(s) 32, 112, 442
CviJI RGCY 7 cut(s) 91, 109, 155, 172, 199, 372, 386
CviKI_1 RGCY 7 cut(s) 91, 109, 155, 172, 199, 372, 386
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 1 cut(s) 105
DpnI GATC 2 cut(s) 310, 456
DpnII GATC 2 cut(s) 308, 454
Ecl136II GAGCTC 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 472
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoRI GAATTC 2 cut(s) 143, 430
EcoRII CCWGG 1 cut(s) 376
EcoT38I GRGCYC 1 cut(s) 111
FaeI CATG 3 cut(s) 35, 115, 445
FaiI YATR 5 cut(s) 33, 113, 194, 361, 443
FaqI GGGAC 1 cut(s) 529
FatI CATG 3 cut(s) 31, 111, 441
Fnu4HI GCNGC 2 cut(s) 153, 227
FokI GGATG 2 cut(s) 247, 360
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 2 cut(s) 153, 227
FspBI CTAG 3 cut(s) 116, 200, 354
GlaI GCGC 1 cut(s) 40
GluI GCNGC 2 cut(s) 153, 227
GsaI CCCAGC 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 42
HaeIII GGCC 2 cut(s) 172, 372
HapII CCGG 2 cut(s) 45, 461
HgaI GACGC 1 cut(s) 482
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 425
Hin1II CATG 3 cut(s) 35, 115, 445
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HindIII AAGCTT 1 cut(s) 384
HinfI GANTC 2 cut(s) 271, 407
HpaII CCGG 2 cut(s) 45, 461
Hpy166II GTNNAC 1 cut(s) 559
Hpy188I TCNGA 2 cut(s) 149, 163
Hpy8I GTNNAC 1 cut(s) 559
Hpy99I CGWCG 1 cut(s) 430
HpyAV CCTTC 1 cut(s) 547
HpyCH4III ACNGT 3 cut(s) 100, 278, 450
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 2 cut(s) 76, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 235, 369
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 1 cut(s) 425
Hsp92I GRCGYC 1 cut(s) 425
Hsp92II CATG 3 cut(s) 35, 115, 445
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 2 cut(s) 308, 454
LmnI GCTCC 1 cut(s) 149
Lsp1109I GCAGC 1 cut(s) 213
LweI GCATC 1 cut(s) 85
MaeI CTAG 3 cut(s) 116, 200, 354
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 1 cut(s) 315
MalI GATC 2 cut(s) 310, 456
MbiI CCGCTC 1 cut(s) 152
MboI GATC 2 cut(s) 308, 454
MboII GAAGA 4 cut(s) 321, 476, 562, 577
MhlI GDGCHC 3 cut(s) 111, 123, 394
MluCI AATT 7 cut(s) 7, 26, 143, 213, 295, 430, 529
MnlI CCTC 2 cut(s) 233, 414
MseI TTAA 3 cut(s) 221, 287, 543
MspI CCGG 2 cut(s) 45, 461
MspR9I CCNGG 1 cut(s) 378
MvaI CCWGG 1 cut(s) 378
MvnI CGCG 1 cut(s) 476
MwoI GCNNNNNNNGC 2 cut(s) 235, 369
NdeII GATC 2 cut(s) 308, 454
NlaIII CATG 3 cut(s) 35, 115, 445
NmuCI GTSAC 1 cut(s) 315
NspI RCATGY 2 cut(s) 35, 445
NspV TTCGAA 1 cut(s) 434
PcsI WCGNNNNNNNCGW 1 cut(s) 431
PfeI GAWTC 2 cut(s) 271, 407
PfoI TCCNGGA 1 cut(s) 376
PkrI GCNGC 2 cut(s) 154, 228
Psp124BI GAGCTC 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 376
PspFI CCCAGC 1 cut(s) 364
PspGI CCWGG 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 104
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 3 cut(s) 221, 287, 543
SatI GCNGC 2 cut(s) 153, 227
Sau3AI GATC 2 cut(s) 308, 454
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 3 cut(s) 111, 123, 394
SetI ASST 8 cut(s) 111, 201, 317, 338, 346, 388, 428, 558
SfaNI GCATC 1 cut(s) 85
SfuI TTCGAA 1 cut(s) 434
Sse9I AATT 7 cut(s) 7, 26, 143, 213, 295, 430, 529
SsiI CCGC 3 cut(s) 152, 188, 416
SspI AATATT 1 cut(s) 488
SspMI CTAG 3 cut(s) 116, 200, 354
SstI GAGCTC 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 376
TaaI ACNGT 3 cut(s) 100, 278, 450
TaiI ACGT 1 cut(s) 428
TaqI TCGA 4 cut(s) 62, 141, 428, 434
TasI AATT 7 cut(s) 7, 26, 143, 213, 295, 430, 529
TatI WGTACW 1 cut(s) 438
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 2 cut(s) 271, 407
Tru1I TTAA 3 cut(s) 221, 287, 543
Tru9I TTAA 3 cut(s) 221, 287, 543
TseFI GTSAC 1 cut(s) 315
TseI GCWGC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 315
TspDTI ATGAA 2 cut(s) 209, 248
XapI RAATTY 5 cut(s) 143, 213, 295, 430, 529
XceI RCATGY 2 cut(s) 35, 445
XspI CTAG 3 cut(s) 116, 200, 354
ZraI GACGTC 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.