Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Reverse (-)

67428210 .. 67437313

Gene Structure 9104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015520

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGATTGTCATTATGGCTGTCTTCCTCTTGATTTATTTTTTCCTAATGCTGGGTGCTGCCAAACGGGAGATTCGACTTTGCACCAAACTCATAAGACAGGATGAGGCAACTCGACAAGCGGAGACAAAGAGTATGAAAAAATCTGATGCGATTACAAGTGCAAGCCATGATGTTCTTAATGCTCTTGCTTGCATGACTGAATTGATCAAAATATCCTGTGACGAAGTTGCCCAGGGCTCTGAAATAAAGGAATATCCGACACAAGTGGACGCATGTACAAAAGACCTCTTAGGTATGTTGAACTCTATTCTTGATAAAAGCAAAATTGAAGCGAGTAAGATGGTACTTGAAGACGAAGAGTTTGACGTATCGCAACTTGTTGAAGAGGTAGTCGATTTCTTTCTTCCATCGGGTTTAAAGAAGGGCATAGATGTGGTGTTGGATCCGTATGATTGCTCTCTTCTAAAGTTCACATTGGATGATACAGGGAGGGGAATTCCAAAGGAGAAGCAAAAAGAAGTGTTTGAAAACTTTGTTCAATTCAAAGAAAAAGCTCATGGAGAGGAAGGTACTGGCTTAGGACTTGGTATTGTTCAGTCTCTGGTACGCTTGATGCACGGAGAAATAGGAATTGTGGACAAGGAGATTGGTGAAAAAGGGACATGCTTCAGAGCGACGGAGAGTGGTACACCAGTTCATCAAGCTCCTAGTTCATCAAGGTATCGGTTACATACTGATGATGAATCTGATATCTCATCTTCACCAATCCAATGTCATGATCAGTCTCATAATGTTGGCTTTACATCAAGAAACTCACCAGTTGGTCATGATCACCCACATCCACATAGAGAAACACATGAACATGATAATCCGAGCACACCTTTGAGTGGGAAAAAAATTTTGGTTGCCGAGGATGATGAGCTTCTGAGCTATTTGGCTATGAGAATTCTGTTAAAGGAGGGAGCAACTGTGAAGCTTTGTAAAAATGGAGGAGAAGCTCTAGATGTAATTCGCATAGATCTACTCAACCAAGGGAAACATGAATCTACTCAACCAAGGGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

356

Amino Acids

39.39

Weight (kDa)

5.29

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	124 - 225	1.8e-15	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	2 cut(s)	437, 450
AcsI	RAATTY	3 cut(s)	495, 897, 945
AcuI	CTGAAG	1 cut(s)	652
AfaI	GTAC	5 cut(s)	277, 345, 571, 606, 688
AfiI	CCNNNNNNNGG	2 cut(s)	49, 887
AgsI	TTSAA	7 cut(s)	301, 329, 350, 383, 527, 539, 544
AjnI	CCWGG	1 cut(s)	231
AjuI	GAANNNNNNNTTGG	2 cut(s)	884, 916
AluBI	AGCT	6 cut(s)	554, 704, 922, 930, 976, 998
AluI	AGCT	6 cut(s)	554, 704, 922, 930, 976, 998
Alw21I	GWGCWC	1 cut(s)	878
Alw26I	GTCTC	3 cut(s)	116, 603, 789
AlwI	GGATC	2 cut(s)	437, 450
AlwNI	CAGNNNCTG	1 cut(s)	601
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	3 cut(s)	495, 897, 945
ArsI	GACNNNNNNTTYG	2 cut(s)	344, 376
AsuHPI	GGTGA	4 cut(s)	662, 753, 807, 824
BaeI	ACNNNNGTAYC	2 cut(s)	678, 711
BamHI	GGATCC	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	239
BbsI	GAAGAC	2 cut(s)	13, 357
Bbv12I	GWGCWC	1 cut(s)	878
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	2 cut(s)	334, 415
BciT130I	CCWGG	1 cut(s)	233
BclI	TGATCA	3 cut(s)	204, 778, 829
BcoDI	GTCTC	3 cut(s)	116, 603, 789
BfaI	CTAG	2 cut(s)	708, 1001
BglII	AGATCT	1 cut(s)	1018
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	1 cut(s)	233
BmsI	GCATC	2 cut(s)	136, 603
BpiI	GAAGAC	2 cut(s)	13, 357
Bpu10I	CCTNAGC	1 cut(s)	577
BsaJI	CCNNGG	5 cut(s)	231, 232, 909, 1030, 1055
BsaXI	ACNNNNNCTCC	2 cut(s)	954, 984
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 887
Bse1I	ACTGG	3 cut(s)	577, 692, 818
BseBI	CCWGG	1 cut(s)	233
BseDI	CCNNGG	5 cut(s)	231, 232, 909, 1030, 1055
BseGI	GGATG	4 cut(s)	106, 484, 838, 919
BseLI	CCNNNNNNNGG	2 cut(s)	49, 887
BseMII	CTCAG	1 cut(s)	917
BseNI	ACTGG	3 cut(s)	577, 692, 818
BseRI	GAGGAG	1 cut(s)	1005
BseXI	GCAGC	1 cut(s)	43
BseYI	CCCAGC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	878
BslFI	GGGAC	1 cut(s)	673
BslI	CCNNNNNNNGG	2 cut(s)	49, 887
BsmAI	GTCTC	3 cut(s)	116, 603, 789
BsmFI	GGGAC	1 cut(s)	673
Bsp1286I	GDGCHC	2 cut(s)	239, 878
Bsp1407I	TGTACA	1 cut(s)	275
Bsp143I	GATC	5 cut(s)	204, 442, 778, 829, 1018
BspACI	CCGC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	918
BspHI	TCATGA	2 cut(s)	775, 826
BspLI	GGNNCC	1 cut(s)	444
BspPI	GGATC	2 cut(s)	437, 450
BsrGI	TGTACA	1 cut(s)	275
BsrI	ACTGG	3 cut(s)	577, 692, 818
BssECI	CCNNGG	5 cut(s)	231, 232, 909, 1030, 1055
BssMI	GATC	5 cut(s)	204, 442, 778, 829, 1018
BssT1I	CCWWGG	2 cut(s)	1030, 1055
Bst2UI	CCWGG	1 cut(s)	233
Bst4CI	ACNGT	1 cut(s)	970
Bst6I	CTCTTC	3 cut(s)	351, 378, 465
BstAUI	TGTACA	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	163, 190
BstDEI	CTNAG	3 cut(s)	289, 577, 926
BstF5I	GGATG	4 cut(s)	106, 484, 838, 919
BstKTI	GATC	5 cut(s)	207, 445, 781, 832, 1021
BstMAI	GTCTC	3 cut(s)	116, 603, 789
BstMBI	GATC	5 cut(s)	204, 442, 778, 829, 1018
BstNI	CCWGG	1 cut(s)	233
BstNSI	RCATGY	2 cut(s)	276, 666
BstSCI	CCNGG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	43
BstV2I	GAAGAC	2 cut(s)	13, 357
BstX2I	RGATCY	2 cut(s)	442, 1018
BstYI	RGATCY	2 cut(s)	442, 1018
BtsCI	GGATG	4 cut(s)	106, 484, 838, 919
Cac8I	GCNNGC	2 cut(s)	163, 190
CaiI	CAGNNNCTG	1 cut(s)	601
CciI	TCATGA	2 cut(s)	775, 826
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	5 cut(s)	276, 344, 570, 605, 687
CviQI	GTAC	5 cut(s)	276, 344, 570, 605, 687
DdeI	CTNAG	3 cut(s)	289, 577, 926
DpnI	GATC	5 cut(s)	206, 444, 780, 831, 1020
DpnII	GATC	5 cut(s)	204, 442, 778, 829, 1018
DraI	TTTAAA	1 cut(s)	417
Eam1104I	CTCTTC	3 cut(s)	351, 378, 465
EarI	CTCTTC	3 cut(s)	351, 378, 465
Eco130I	CCWWGG	2 cut(s)	1030, 1055
Eco24I	GRGCYC	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	751
Eco57I	CTGAAG	1 cut(s)	652
EcoRI	GAATTC	2 cut(s)	495, 945
EcoRII	CCWGG	1 cut(s)	231
EcoRV	GATATC	1 cut(s)	751
EcoT14I	CCWWGG	2 cut(s)	1030, 1055
EcoT38I	GRGCYC	1 cut(s)	239
ErhI	CCWWGG	2 cut(s)	1030, 1055
FaqI	GGGAC	1 cut(s)	673
FbaI	TGATCA	3 cut(s)	204, 778, 829
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	4 cut(s)	113, 491, 825, 926
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	2 cut(s)	708, 1001
GluI	GCNGC	1 cut(s)	57
GsaI	CCCAGC	1 cut(s)	53
HgaI	GACGC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	974
HinfI	GANTC	3 cut(s)	70, 743, 1043
HphI	GGTGA	4 cut(s)	662, 753, 807, 824
Hpy166II	GTNNAC	4 cut(s)	268, 471, 637, 689
Hpy188I	TCNGA	7 cut(s)	145, 241, 258, 671, 748, 873, 927
Hpy188III	TCNNGA	6 cut(s)	28, 311, 776, 807, 827, 1001
Hpy8I	GTNNAC	4 cut(s)	268, 471, 637, 689
Hpy99I	CGWCG	1 cut(s)	679
HpyAV	CCTTC	2 cut(s)	415, 560
HpyCH4III	ACNGT	1 cut(s)	970
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	4 cut(s)	81, 161, 192, 616
HpyF3I	CTNAG	3 cut(s)	289, 577, 926
HpySE526I	ACGT	1 cut(s)	366
Ksp22I	TGATCA	3 cut(s)	204, 778, 829
Kzo9I	GATC	5 cut(s)	204, 442, 778, 829, 1018
LmnI	GCTCC	2 cut(s)	709, 962
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	2 cut(s)	136, 603
MaeI	CTAG	2 cut(s)	708, 1001
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	2 cut(s)	218, 726
MalI	GATC	5 cut(s)	206, 444, 780, 831, 1020
MboI	GATC	5 cut(s)	204, 442, 778, 829, 1018
MboII	GAAGA	7 cut(s)	13, 362, 368, 395, 395, 452, 750
MflI	RGATCY	2 cut(s)	442, 1018
MhlI	GDGCHC	2 cut(s)	239, 878
MluCI	AATT	8 cut(s)	200, 324, 495, 539, 630, 897, 945, 1008
MmeI	TCCRAC	2 cut(s)	281, 420
MnlI	CCTC	9 cut(s)	35, 97, 296, 379, 483, 556, 904, 952, 983
MseI	TTAA	3 cut(s)	177, 416, 953
MslI	CAYNNNNRTG	3 cut(s)	431, 735, 861
MspR9I	CCNGG	1 cut(s)	233
MvaI	CCWGG	1 cut(s)	233
NdeII	GATC	5 cut(s)	204, 442, 778, 829, 1018
NlaIV	GGNNCC	1 cut(s)	444
NmeAIII	GCCGAG	1 cut(s)	934
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	2 cut(s)	276, 666
PagI	TCATGA	2 cut(s)	775, 826
PasI	CCCWGGG	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	70
PfeI	GAWTC	3 cut(s)	70, 743, 1043
PkrI	GCNGC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	231
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	444
PstNI	CAGNNNCTG	1 cut(s)	601
PsuI	RGATCY	2 cut(s)	442, 1018
RsaI	GTAC	5 cut(s)	277, 345, 571, 606, 688
RsaNI	GTAC	5 cut(s)	276, 344, 570, 605, 687
RseI	CAYNNNNRTG	3 cut(s)	431, 735, 861
SaqAI	TTAA	3 cut(s)	177, 416, 953
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	5 cut(s)	204, 442, 778, 829, 1018
ScrFI	CCNGG	1 cut(s)	233
SduI	GDGCHC	2 cut(s)	239, 878
SfaNI	GCATC	2 cut(s)	136, 603
SmiMI	CAYNNNNRTG	3 cut(s)	431, 735, 861
Sse9I	AATT	8 cut(s)	200, 324, 495, 539, 630, 897, 945, 1008
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	2 cut(s)	708, 1001
StyD4I	CCNGG	1 cut(s)	231
StyI	CCWWGG	2 cut(s)	1030, 1055
TaaI	ACNGT	1 cut(s)	970
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	3 cut(s)	73, 112, 393
TasI	AATT	8 cut(s)	200, 324, 495, 539, 630, 897, 945, 1008
TatI	WGTACW	1 cut(s)	275
TfiI	GAWTC	3 cut(s)	70, 743, 1043
Tru1I	TTAA	3 cut(s)	177, 416, 953
Tru9I	TTAA	3 cut(s)	177, 416, 953
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	6 cut(s)	149, 686, 702, 756, 873, 1056
TspGWI	ACGGA	3 cut(s)	435, 633, 692
XapI	RAATTY	3 cut(s)	495, 897, 945
XbaI	TCTAGA	1 cut(s)	1000
XceI	RCATGY	2 cut(s)	276, 666
XspI	CTAG	2 cut(s)	708, 1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.