Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Forward (+)

6036939 .. 6037475

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22464

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCACGGAGAAATAGGAATAGTGGACAAGGAGATTGGTGAAAAAGGGACATGCTTCAGGTTTAATGTTCTCGTGAGAGCTATTAATGTGTATGAGGATCATATAAAATTAAAACAAGACCTTGAATTGGGAGGTGACCCTAGTTATGATGACAGAGATCAACAATTGGGACTAATAGCAGCTATACGCACACCAAAGGCAAACCCCAGATTGACCATAGTTCCTAGTCTGAAGTTCACACCACTTAGAAGCCCCGATTTGAATGTATTCCGCAGCACTCCTAGTAGTCCTAAGGTAGAGGAATCTATTGTTGTACTACTGAATAAAAATGAAGAGCGACGGAGAATGGTACACCAGTTCATGAAGGGTAGCCTTGGGATAAAGGTATTAGTGGTAGAACAGTGGGGACGACTGGCTCATACTCTCAAGAAAATAAAATACATGACGATGAAGGGTTACCATTCTCAACATCATCATAGTTCCTCTTCAGGAATATCTGATTTGGGTCTGCAGCACTGCTTGAGCAAATCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

178

Amino Acids

20.11

Weight (kDa)

9.49

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	271
AclWI	GGATC	1 cut(s)	105
AcuI	CTGAAG	3 cut(s)	40, 251, 471
AfaI	GTAC	2 cut(s)	315, 351
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	125, 262
AluBI	AGCT	2 cut(s)	80, 182
AluI	AGCT	2 cut(s)	80, 182
AlwI	GGATC	1 cut(s)	105
ApeKI	GCWGC	3 cut(s)	179, 273, 511
AseI	ATTAAT	1 cut(s)	84
Asp700I	GAANNNNTTC	1 cut(s)	266
AsuHPI	GGTGA	2 cut(s)	50, 146
AxyI	CCTNAGG	1 cut(s)	291
BaeI	ACNNNNGTAYC	2 cut(s)	341, 374
BauI	CACGAG	1 cut(s)	71
BbvI	GCAGC	3 cut(s)	191, 285, 523
BfaI	CTAG	3 cut(s)	141, 225, 282
BfmI	CTRYAG	1 cut(s)	509
BisI	GCNGC	3 cut(s)	180, 274, 512
BlsI	GCNGC	3 cut(s)	181, 275, 513
BpuEI	CTTGAG	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	2 cut(s)	355, 417
Bse21I	CCTNAGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseNI	ACTGG	2 cut(s)	355, 417
BseXI	GCAGC	3 cut(s)	191, 285, 523
BslFI	GGGAC	3 cut(s)	61, 183, 420
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	3 cut(s)	61, 183, 420
Bsp143I	GATC	2 cut(s)	97, 157
BspACI	CCGC	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	360
BspMAI	CTGCAG	1 cut(s)	513
BspPI	GGATC	1 cut(s)	105
BspQI	GCTCTTC	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	355, 417
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	2 cut(s)	97, 157
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	373
Bst2BI	CACGAG	1 cut(s)	71
Bst4CI	ACNGT	1 cut(s)	402
Bst6I	CTCTTC	2 cut(s)	327, 490
BstDEI	CTNAG	2 cut(s)	245, 291
BstEII	GGTNACC	2 cut(s)	134, 455
BstKTI	GATC	2 cut(s)	100, 160
BstMBI	GATC	2 cut(s)	97, 157
BstNSI	RCATGY	1 cut(s)	54
BstPI	GGTNACC	2 cut(s)	134, 455
BstSFI	CTRYAG	1 cut(s)	509
BstV1I	GCAGC	3 cut(s)	191, 285, 523
Bsu36I	CCTNAGG	1 cut(s)	291
BtsI	GCAGTG	1 cut(s)	514
BtsIMutI	CAGTG	2 cut(s)	407, 514
CciI	TCATGA	1 cut(s)	360
Csp6I	GTAC	2 cut(s)	314, 350
CviAII	CATG	3 cut(s)	51, 361, 442
CviJI	RGCY	5 cut(s)	80, 182, 252, 372, 416
CviKI_1	RGCY	5 cut(s)	80, 182, 252, 372, 416
CviQI	GTAC	2 cut(s)	314, 350
DdeI	CTNAG	2 cut(s)	245, 291
DpnI	GATC	2 cut(s)	99, 159
DpnII	GATC	2 cut(s)	97, 157
Eam1104I	CTCTTC	2 cut(s)	327, 490
EarI	CTCTTC	2 cut(s)	327, 490
Eco130I	CCWWGG	1 cut(s)	373
Eco57I	CTGAAG	3 cut(s)	40, 251, 471
Eco81I	CCTNAGG	1 cut(s)	291
Eco91I	GGTNACC	2 cut(s)	134, 455
EcoO65I	GGTNACC	2 cut(s)	134, 455
EcoT14I	CCWWGG	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	3 cut(s)	54, 364, 445
FaqI	GGGAC	3 cut(s)	61, 183, 420
FatI	CATG	3 cut(s)	50, 360, 441
Fnu4HI	GCNGC	3 cut(s)	180, 274, 512
Fsp4HI	GCNGC	3 cut(s)	180, 274, 512
FspBI	CTAG	3 cut(s)	141, 225, 282
GluI	GCNGC	3 cut(s)	180, 274, 512
Hin1II	CATG	3 cut(s)	54, 364, 445
HinfI	GANTC	1 cut(s)	302
HphI	GGTGA	2 cut(s)	50, 146
Hpy166II	GTNNAC	3 cut(s)	25, 237, 352
Hpy188I	TCNGA	2 cut(s)	231, 499
Hpy188III	TCNNGA	4 cut(s)	73, 361, 427, 489
Hpy8I	GTNNAC	3 cut(s)	25, 237, 352
Hpy99I	CGWCG	1 cut(s)	342
HpyAV	CCTTC	2 cut(s)	358, 445
HpyCH4III	ACNGT	1 cut(s)	402
HpyCH4V	TGCA	2 cut(s)	4, 511
HpyF3I	CTNAG	2 cut(s)	245, 291
Hsp92II	CATG	3 cut(s)	54, 364, 445
Kzo9I	GATC	2 cut(s)	97, 157
LguI	GCTCTTC	1 cut(s)	327
LpnPI	CCDG	5 cut(s)	43, 220, 368, 398, 474
Lsp1109I	GCAGC	3 cut(s)	191, 285, 523
MaeI	CTAG	3 cut(s)	141, 225, 282
MaeIII	GTNAC	2 cut(s)	134, 455
MalI	GATC	2 cut(s)	99, 159
MboI	GATC	2 cut(s)	97, 157
MboII	GAAGA	2 cut(s)	344, 477
MfeI	CAATTG	1 cut(s)	164
MluCI	AATT	3 cut(s)	107, 125, 164
MnlI	CCTC	4 cut(s)	88, 125, 292, 493
MroXI	GAANNNNTTC	1 cut(s)	266
MseI	TTAA	3 cut(s)	63, 84, 110
MslI	CAYNNNNRTG	1 cut(s)	446
MunI	CAATTG	1 cut(s)	164
NdeII	GATC	2 cut(s)	97, 157
NlaIII	CATG	3 cut(s)	54, 364, 445
NmuCI	GTSAC	1 cut(s)	134
NspI	RCATGY	1 cut(s)	54
PagI	TCATGA	1 cut(s)	360
PciSI	GCTCTTC	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	266
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	3 cut(s)	181, 275, 513
PshBI	ATTAAT	1 cut(s)	84
PspEI	GGTNACC	2 cut(s)	134, 455
PstI	CTGCAG	1 cut(s)	513
RsaI	GTAC	2 cut(s)	315, 351
RsaNI	GTAC	2 cut(s)	314, 350
RseI	CAYNNNNRTG	1 cut(s)	446
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	3 cut(s)	63, 84, 110
SatI	GCNGC	3 cut(s)	180, 274, 512
Sau3AI	GATC	2 cut(s)	97, 157
SetI	ASST	7 cut(s)	62, 82, 123, 136, 184, 297, 387
SfcI	CTRYAG	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	2 cut(s)	425, 520
SmoI	CTYRAG	2 cut(s)	425, 520
Sse9I	AATT	3 cut(s)	107, 125, 164
SsiI	CCGC	1 cut(s)	271
SspMI	CTAG	3 cut(s)	141, 225, 282
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	402
TasI	AATT	3 cut(s)	107, 125, 164
TatI	WGTACW	1 cut(s)	313
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	3 cut(s)	63, 84, 110
Tru9I	TTAA	3 cut(s)	63, 84, 110
TscAI	CASTG	2 cut(s)	407, 521
TseFI	GTSAC	1 cut(s)	134
TseI	GCWGC	3 cut(s)	179, 273, 511
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	4 cut(s)	345, 349, 377, 464
TspGWI	ACGGA	2 cut(s)	21, 355
TspRI	CASTG	2 cut(s)	407, 521
VspI	ATTAAT	1 cut(s)	84
XceI	RCATGY	1 cut(s)	54
XmnI	GAANNNNTTC	1 cut(s)	266
XspI	CTAG	3 cut(s)	141, 225, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.