Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Reverse (-)

66717606 .. 66718721

Gene Structure 1116 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015494

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGCTGGGTGCTGCCAAACGGGAGATTCGACTTTGCACCAAACTCATGAGACAGGATGAGGCAACTCGACAAGCGGAGACAAAGAGTATGAAAAAATCTGATGCGATAATTACAAGTGCAAGCCATGATGTTCGTAATGCTCTTGCTTGCATGACTGAAATGATCAAAATATCCTGTGATGAAGTTGCCCAGGGCTCTGAAATAAAGGAATATCCGACACAAGTGGACGCATGTACAAAAGACCTCTTAGATATGTTGAACTCTATTCTTGATAAAAGCAAAATTGAAGCGAGTAAGATGGTACTTGAAGACGAAGAGTTTGACGTATCGCAACTTGTTGAAGAGGTAGTCGATTTCTTTCTTCCATCGGGTTTAAAGAAGGGCATAGATGTGGTTTCACATGTGAAAGGTGACAAGGGAAGGCTTAAGCAGATATTATGCAACTTATTAGGGAATGCTGTCAAATTTACTTCAGAGGGACATGTAACAGTTCGTGCTTGGGTTCAGAAACCTAGTTTCATGAATTCAATCACTGCTGCTAATTCTGATTTGAATAATAGTTTCTTGAAGCATTTGGGTGTTCCAAATGATCCAAGTTTTTTGGAATTTGTTTTTGAAGTGGATGATACAGGGAGGGGAATTCCAAAGGAGAAGCAAAAAGAAGTGTTTGAAAACTTTGTTCAATTCAAAGAAAAAGCTCATGGAGAGGAAGGTACTGGCTTAGGACTTGGTATTGTTCAGTCTCTGGTACGCTTGGTGCACGGAGAAATAGGAATTGTGGACAAGGAGATTGGTGAAAAAGGGACATGCTTCAGGTTTAATGTTCTCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

278

Amino Acids

30.71

Weight (kDa)

5.52

Isoelectric Point (pI)

26.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	137 - 275	9.8e-21	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	584
AcsI	RAATTY	4 cut(s)	464, 523, 605, 639
AcuI	CTGAAG	2 cut(s)	456, 796
AfaI	GTAC	4 cut(s)	235, 303, 715, 750
AflII	CTTAAG	1 cut(s)	425
AflIII	ACRYGT	2 cut(s)	400, 481
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	1 cut(s)	698
AluI	AGCT	1 cut(s)	698
Alw21I	GWGCWC	1 cut(s)	762
Alw26I	GTCTC	3 cut(s)	43, 71, 747
Alw44I	GTGCAC	1 cut(s)	758
AlwI	GGATC	1 cut(s)	584
AlwNI	CAGNNNCTG	1 cut(s)	745
ApaLI	GTGCAC	1 cut(s)	758
ApeKI	GCWGC	2 cut(s)	11, 536
ApoI	RAATTY	4 cut(s)	464, 523, 605, 639
ArsI	GACNNNNNNTTYG	2 cut(s)	302, 334
AsuHPI	GGTGA	2 cut(s)	422, 806
BaeGI	GKGCMC	1 cut(s)	762
BanII	GRGCYC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	762
BbvI	GCAGC	1 cut(s)	523
BccI	CCATC	2 cut(s)	292, 373
BciT130I	CCWGG	1 cut(s)	191
BclI	TGATCA	1 cut(s)	162
BcoDI	GTCTC	3 cut(s)	43, 71, 747
BfaI	CTAG	1 cut(s)	513
BfrI	CTTAAG	1 cut(s)	425
BisI	GCNGC	2 cut(s)	12, 537
BlsI	GCNGC	2 cut(s)	13, 538
Bme1390I	CCNGG	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	315
Bpu10I	CCTNAGC	1 cut(s)	721
BsaJI	CCNNGG	2 cut(s)	189, 190
Bse1I	ACTGG	1 cut(s)	721
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	2 cut(s)	189, 190
BseGI	GGATG	2 cut(s)	61, 628
BseNI	ACTGG	1 cut(s)	721
BseSI	GKGCMC	1 cut(s)	762
BseXI	GCAGC	1 cut(s)	523
BseYI	CCCAGC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	762
BslFI	GGGAC	2 cut(s)	492, 817
BsmAI	GTCTC	3 cut(s)	43, 71, 747
BsmFI	GGGAC	2 cut(s)	492, 817
BsmI	GAATGC	1 cut(s)	460
Bsp1286I	GDGCHC	2 cut(s)	197, 762
Bsp1407I	TGTACA	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	162, 589
BspACI	CCGC	1 cut(s)	74
BspHI	TCATGA	2 cut(s)	45, 519
BspPI	GGATC	1 cut(s)	584
BspTI	CTTAAG	1 cut(s)	425
BsrGI	TGTACA	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	721
BssECI	CCNNGG	2 cut(s)	189, 190
BssMI	GATC	2 cut(s)	162, 589
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	490
Bst6I	CTCTTC	2 cut(s)	309, 336
BstAFI	CTTAAG	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	121, 148
BstDEI	CTNAG	2 cut(s)	247, 721
BstF5I	GGATG	2 cut(s)	61, 628
BstKTI	GATC	2 cut(s)	165, 592
BstMAI	GTCTC	3 cut(s)	43, 71, 747
BstMBI	GATC	2 cut(s)	162, 589
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	4 cut(s)	234, 404, 485, 810
BstSCI	CCNGG	1 cut(s)	189
BstSLI	GKGCMC	1 cut(s)	762
BstV1I	GCAGC	1 cut(s)	523
BstV2I	GAAGAC	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	61, 628
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	531
Cac8I	GCNNGC	2 cut(s)	121, 148
CaiI	CAGNNNCTG	1 cut(s)	745
CciI	TCATGA	2 cut(s)	45, 519
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	4 cut(s)	234, 302, 714, 749
CviAII	CATG	9 cut(s)	46, 125, 151, 231, 401, 482, 520, 701, 807
CviJI	RGCY	5 cut(s)	123, 195, 424, 698, 720
CviKI_1	RGCY	5 cut(s)	123, 195, 424, 698, 720
CviQI	GTAC	4 cut(s)	234, 302, 714, 749
DdeI	CTNAG	2 cut(s)	247, 721
DpnI	GATC	2 cut(s)	164, 591
DpnII	GATC	2 cut(s)	162, 589
DraI	TTTAAA	1 cut(s)	375
Eam1104I	CTCTTC	2 cut(s)	309, 336
EarI	CTCTTC	2 cut(s)	309, 336
Eco24I	GRGCYC	1 cut(s)	197
Eco57I	CTGAAG	2 cut(s)	456, 796
EcoRI	GAATTC	2 cut(s)	523, 639
EcoRII	CCWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	197
FaeI	CATG	9 cut(s)	49, 128, 154, 234, 404, 485, 523, 704, 810
FaqI	GGGAC	2 cut(s)	492, 817
FatI	CATG	9 cut(s)	45, 124, 150, 230, 400, 481, 519, 700, 806
FbaI	TGATCA	1 cut(s)	162
Fnu4HI	GCNGC	2 cut(s)	12, 537
FokI	GGATG	2 cut(s)	68, 635
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	2 cut(s)	12, 537
FspBI	CTAG	1 cut(s)	513
GluI	GCNGC	2 cut(s)	12, 537
GsaI	CCCAGC	1 cut(s)	8
HgaI	GACGC	1 cut(s)	236
Hin1II	CATG	9 cut(s)	49, 128, 154, 234, 404, 485, 523, 704, 810
HinfI	GANTC	1 cut(s)	25
HphI	GGTGA	2 cut(s)	422, 806
Hpy166II	GTNNAC	3 cut(s)	226, 760, 781
Hpy188I	TCNGA	6 cut(s)	100, 199, 216, 475, 507, 547
Hpy188III	TCNNGA	4 cut(s)	46, 269, 520, 565
Hpy8I	GTNNAC	3 cut(s)	226, 760, 781
HpyAV	CCTTC	3 cut(s)	373, 414, 704
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	5 cut(s)	36, 119, 150, 441, 760
HpyF3I	CTNAG	2 cut(s)	247, 721
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	9 cut(s)	49, 128, 154, 234, 404, 485, 523, 704, 810
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	162, 589
LpnPI	CCDG	8 cut(s)	38, 176, 187, 203, 615, 702, 731, 799
Lsp1109I	GCAGC	1 cut(s)	523
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	513
MaeII	ACGT	1 cut(s)	324
MaeIII	GTNAC	2 cut(s)	410, 484
MalI	GATC	2 cut(s)	164, 591
MboI	GATC	2 cut(s)	162, 589
MboII	GAAGA	4 cut(s)	320, 326, 353, 353
MhlI	GDGCHC	2 cut(s)	197, 762
MluCI	AATT	9 cut(s)	108, 282, 464, 523, 541, 605, 639, 683, 774
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	6 cut(s)	52, 254, 337, 469, 627, 700
MseI	TTAA	3 cut(s)	374, 426, 819
MslI	CAYNNNNRTG	2 cut(s)	389, 576
MspCI	CTTAAG	1 cut(s)	425
MspR9I	CCNGG	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	1 cut(s)	191
NdeII	GATC	2 cut(s)	162, 589
NlaIII	CATG	9 cut(s)	49, 128, 154, 234, 404, 485, 523, 704, 810
NmuCI	GTSAC	1 cut(s)	410
NspI	RCATGY	4 cut(s)	234, 404, 485, 810
PagI	TCATGA	2 cut(s)	45, 519
PasI	CCCWGGG	1 cut(s)	190
PciI	ACATGT	2 cut(s)	400, 481
PcsI	WCGNNNNNNNCGW	1 cut(s)	25
PctI	GAATGC	1 cut(s)	460
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	2 cut(s)	13, 538
PscI	ACATGT	2 cut(s)	400, 481
Psp6I	CCWGG	1 cut(s)	189
PspFI	CCCAGC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	189
PstNI	CAGNNNCTG	1 cut(s)	745
RsaI	GTAC	4 cut(s)	235, 303, 715, 750
RsaNI	GTAC	4 cut(s)	234, 302, 714, 749
RseI	CAYNNNNRTG	2 cut(s)	389, 576
SaqAI	TTAA	3 cut(s)	374, 426, 819
SatI	GCNGC	2 cut(s)	12, 537
Sau3AI	GATC	2 cut(s)	162, 589
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	2 cut(s)	197, 762
SetI	ASST	8 cut(s)	246, 327, 348, 412, 514, 700, 715, 818
SfaNI	GCATC	1 cut(s)	91
SmiMI	CAYNNNNRTG	2 cut(s)	389, 576
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	9 cut(s)	108, 282, 464, 523, 541, 605, 639, 683, 774
SsiI	CCGC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	513
StyD4I	CCNGG	1 cut(s)	189
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	3 cut(s)	28, 67, 351
TasI	AATT	9 cut(s)	108, 282, 464, 523, 541, 605, 639, 683, 774
TatI	WGTACW	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	3 cut(s)	374, 426, 819
Tru9I	TTAA	3 cut(s)	374, 426, 819
TscAI	CASTG	1 cut(s)	538
TseFI	GTSAC	1 cut(s)	410
TseI	GCWGC	2 cut(s)	11, 536
Tsp45I	GTSAC	1 cut(s)	410
TspDTI	ATGAA	4 cut(s)	104, 195, 508, 536
TspGWI	ACGGA	1 cut(s)	777
TspRI	CASTG	1 cut(s)	538
Vha464I	CTTAAG	1 cut(s)	425
VneI	GTGCAC	1 cut(s)	758
XapI	RAATTY	4 cut(s)	464, 523, 605, 639
XceI	RCATGY	4 cut(s)	234, 404, 485, 810
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.