Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8374241.1

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1137

Gene Structure 1137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8374241.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

aatgctttggaatttgtttttgaggtggatgatactggtaggggaattctcaaggagaggcaaaaatcggtgttcgaggactatgtccaagtcaaagaaaaagcacttggagaaggtggtaccggcttaggactgggaattgttcaatctctggtgcgtttgatgcatggagaaataggaattgtggacaaggagattggggaaagagggacatgcttcaggttcaatgtactgctaagcactattaatacctgtgaggatagcataaaagtagaaccagacattgaaatgggaattagtggcttaaaccctagtcccgggccgactgtcaatcaaacaccaattgcaagccccaagttgaacattcgcagtaccaccgcgagtcctaaggtcgagggatcctatgttgtaatgctgattaaaaatgcagagcgcaggagagttatacagaagtttatggagagacttgggataaaagtatcagtagcagaacgatgggaacaacttgctcgtactctccagaacataaaaaacaagaagatttaccattctcaacataattccatatcaggaatacccgatttgggtctgcaggattgcttgatcaaatccgcctcatgcaactccaacttcagctttaatagagcaaaggaagcgtctttgatgagttccatggatggatcaacagataacaacattctttctctctttcataagaagagtagtagtagtaatcttcgtggagcatatgatcgcttcgtaatgctacttattgatactacaggtggaccactcccagaactatgcaagattgtgaatgatttcaaaagaggcctccaaaatggttggtactgcaaggttgtttggttatcaagtccatttactcatagcgatctaagcttcaacagagatatgttggatggcgatgatgttatcaaacacaagcctctacatggtacttgtctatatgaagttgtaagacttcttccagagtgcgggggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

334

Amino Acids

37.04

Weight (kDa)

8.1

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	119
AccII	CGCG	1 cut(s)	380
AciI	CCGC	3 cut(s)	378, 612, 996
AclWI	GGATC	3 cut(s)	393, 406, 688
AcsI	RAATTY	2 cut(s)	11, 45
AcuI	CTGAAG	2 cut(s)	202, 616
AfaI	GTAC	6 cut(s)	121, 231, 373, 514, 851, 958
AfiI	CCNNNNNNNGG	4 cut(s)	317, 584, 953, 995
AgsI	TTSAA	6 cut(s)	146, 226, 287, 361, 826, 904
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	2 cut(s)	636, 900
AluI	AGCT	2 cut(s)	636, 900
Alw26I	GTCTC	1 cut(s)	457
AlwI	GGATC	3 cut(s)	393, 406, 688
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	2 cut(s)	320, 832
ApoI	RAATTY	2 cut(s)	11, 45
ArsI	GACNNNNNNTTYG	2 cut(s)	641, 673
AseI	ATTAAT	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	821
Asp718I	GGTACC	1 cut(s)	119
AspLEI	GCGC	1 cut(s)	435
AspS9I	GGNCC	2 cut(s)	320, 788
AsuC2I	CCSGG	2 cut(s)	318, 319
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	788
AxyI	CCTNAGG	1 cut(s)	387
BamHI	GGATCC	1 cut(s)	398
BanI	GGYRCC	1 cut(s)	119
BarI	GAAGNNNNNNTAC	2 cut(s)	969, 1001
BccI	CCATC	3 cut(s)	489, 671, 914
BclI	TGATCA	1 cut(s)	603
BcnI	CCSGG	2 cut(s)	318, 319
BcoDI	GTCTC	1 cut(s)	457
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	2 cut(s)	590, 780
BlpI	GCTNAGC	1 cut(s)	236
Bme1390I	CCNGG	2 cut(s)	318, 319
Bme18I	GGWCC	1 cut(s)	788
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	2 cut(s)	320, 788
BmiI	GGNNCC	2 cut(s)	121, 400
BmrFI	CCNGG	2 cut(s)	318, 319
BmrI	ACTGGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	153
BmuI	ACTGGG	1 cut(s)	143
BpmI	CTGGAG	1 cut(s)	503
Bpu10I	CCTNAGC	1 cut(s)	127
Bpu1102I	GCTNAGC	1 cut(s)	236
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	2 cut(s)	318, 319
BsaJI	CCNNGG	2 cut(s)	317, 672
Bsc4I	CCNNNNNNNGG	4 cut(s)	317, 584, 953, 995
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	2 cut(s)	40, 138
Bse21I	CCTNAGG	1 cut(s)	387
BseDI	CCNNGG	2 cut(s)	317, 672
BseGI	GGATG	3 cut(s)	34, 682, 925
BseLI	CCNNNNNNNGG	4 cut(s)	317, 584, 953, 995
BseNI	ACTGG	2 cut(s)	40, 138
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	2 cut(s)	322, 834
BshNI	GGYRCC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	123, 318
BslFI	GGGAC	2 cut(s)	223, 300
BslI	CCNNNNNNNGG	4 cut(s)	317, 584, 953, 995
BsmAI	GTCTC	1 cut(s)	457
BsmFI	GGGAC	2 cut(s)	223, 300
BsnI	GGCC	2 cut(s)	322, 834
BsoBI	CYCGRG	1 cut(s)	317
Bsp143I	GATC	5 cut(s)	398, 603, 680, 751, 892
Bsp1720I	GCTNAGC	1 cut(s)	236
Bsp19I	CCATGG	1 cut(s)	672
BspACI	CCGC	3 cut(s)	378, 612, 996
BspANI	GGCC	2 cut(s)	322, 834
BspFNI	CGCG	1 cut(s)	380
BspLI	GGNNCC	2 cut(s)	121, 400
BspMAI	CTGCAG	1 cut(s)	594
BspPI	GGATC	3 cut(s)	393, 406, 688
BspT107I	GGYRCC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	40, 138
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	317, 672
BssMI	GATC	5 cut(s)	398, 603, 680, 751, 892
BssT1I	CCWWGG	1 cut(s)	672
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	1 cut(s)	713
BstC8I	GCNNGC	1 cut(s)	349
BstDEI	CTNAG	4 cut(s)	127, 236, 387, 896
BstDSI	CCRYGG	1 cut(s)	672
BstF5I	GGATG	3 cut(s)	34, 682, 925
BstFNI	CGCG	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	435
BstKTI	GATC	5 cut(s)	401, 606, 683, 754, 895
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	5 cut(s)	398, 603, 680, 751, 892
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 653, 897
BstNSI	RCATGY	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	316, 317
BstSFI	CTRYAG	2 cut(s)	590, 780
BstUI	CGCG	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
Bsu36I	CCTNAGG	1 cut(s)	387
BsuRI	GGCC	2 cut(s)	322, 834
BtgI	CCRYGG	1 cut(s)	672
BtgZI	GCGATG	1 cut(s)	939
BtsCI	GGATG	3 cut(s)	34, 682, 925
Cac8I	GCNNGC	1 cut(s)	349
CfoI	GCGC	1 cut(s)	435
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	320, 788
Cfr9I	CCCGGG	1 cut(s)	317
CseI	GACGC	1 cut(s)	645
Csp6I	GTAC	6 cut(s)	120, 230, 372, 513, 850, 957
CviAII	CATG	5 cut(s)	167, 213, 618, 673, 953
CviJI	RGCY	8 cut(s)	126, 303, 322, 351, 636, 834, 900, 946
CviKI_1	RGCY	8 cut(s)	126, 303, 322, 351, 636, 834, 900, 946
CviQI	GTAC	6 cut(s)	120, 230, 372, 513, 850, 957
DdeI	CTNAG	4 cut(s)	127, 236, 387, 896
DpnI	GATC	5 cut(s)	400, 605, 682, 753, 894
DpnII	GATC	5 cut(s)	398, 603, 680, 751, 892
Eam1104I	CTCTTC	1 cut(s)	713
EarI	CTCTTC	1 cut(s)	713
EciI	GGCGGA	1 cut(s)	601
Eco130I	CCWWGG	1 cut(s)	672
Eco147I	AGGCCT	1 cut(s)	834
Eco47I	GGWCC	1 cut(s)	788
Eco57I	CTGAAG	2 cut(s)	202, 616
Eco81I	CCTNAGG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	672
EcoT22I	ATGCAT	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	672
FaeI	CATG	5 cut(s)	170, 216, 621, 676, 956
FaqI	GGGAC	2 cut(s)	223, 300
FatI	CATG	5 cut(s)	166, 212, 617, 672, 952
FauI	CCCGC	1 cut(s)	989
FauNDI	CATATG	1 cut(s)	748
FbaI	TGATCA	1 cut(s)	603
FokI	GGATG	3 cut(s)	41, 689, 932
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	1 cut(s)	434
GsuI	CTGGAG	1 cut(s)	503
HaeIII	GGCC	2 cut(s)	322, 834
HapII	CCGG	2 cut(s)	123, 318
HgaI	GACGC	1 cut(s)	645
HhaI	GCGC	1 cut(s)	435
Hin1II	CATG	5 cut(s)	170, 216, 621, 676, 956
Hin6I	GCGC	1 cut(s)	433
HinP1I	GCGC	1 cut(s)	433
HindIII	AAGCTT	1 cut(s)	898
HinfI	GANTC	1 cut(s)	382
HpaII	CCGG	2 cut(s)	123, 318
Hpy166II	GTNNAC	2 cut(s)	187, 788
Hpy188III	TCNNGA	3 cut(s)	520, 570, 989
Hpy8I	GTNNAC	2 cut(s)	187, 788
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	7 cut(s)	166, 347, 428, 592, 621, 807, 855
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 653, 897
HpyF3I	CTNAG	4 cut(s)	127, 236, 387, 896
Hsp92II	CATG	5 cut(s)	170, 216, 621, 676, 956
HspAI	GCGC	1 cut(s)	433
KpnI	GGTACC	1 cut(s)	123
Ksp22I	TGATCA	1 cut(s)	603
Kzo9I	GATC	5 cut(s)	398, 603, 680, 751, 892
LmnI	GCTCC	1 cut(s)	743
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	1 cut(s)	312
MalI	GATC	5 cut(s)	400, 605, 682, 753, 894
MboI	GATC	5 cut(s)	398, 603, 680, 751, 892
MboII	GAAGA	4 cut(s)	550, 728, 730, 977
MfeI	CAATTG	1 cut(s)	342
MflI	RGATCY	1 cut(s)	398
MluCI	AATT	7 cut(s)	11, 45, 138, 180, 294, 342, 559
MlyI	GAGTC	1 cut(s)	391
MmeI	TCCRAC	2 cut(s)	651, 897
Mph1103I	ATGCAT	1 cut(s)	168
MroXI	GAANNNNTTC	1 cut(s)	821
MseI	TTAA	4 cut(s)	246, 305, 420, 639
MslI	CAYNNNNRTG	1 cut(s)	287
MspI	CCGG	2 cut(s)	123, 318
MspR9I	CCNGG	2 cut(s)	318, 319
MunI	CAATTG	1 cut(s)	342
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	3 cut(s)	163, 653, 897
NciI	CCSGG	2 cut(s)	318, 319
NcoI	CCATGG	1 cut(s)	672
NdeI	CATATG	1 cut(s)	748
NdeII	GATC	5 cut(s)	398, 603, 680, 751, 892
NlaIII	CATG	5 cut(s)	170, 216, 621, 676, 956
NlaIV	GGNNCC	2 cut(s)	121, 400
NsiI	ATGCAT	1 cut(s)	168
NspI	RCATGY	1 cut(s)	216
PceI	AGGCCT	1 cut(s)	834
PdmI	GAANNNNTTC	1 cut(s)	821
PflFI	GACNNNGTC	1 cut(s)	83
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
PshBI	ATTAAT	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	121, 400
PspPI	GGNCC	2 cut(s)	320, 788
PstI	CTGCAG	1 cut(s)	594
PsuI	RGATCY	1 cut(s)	398
PsyI	GACNNNGTC	1 cut(s)	83
RsaI	GTAC	6 cut(s)	121, 231, 373, 514, 851, 958
RsaNI	GTAC	6 cut(s)	120, 230, 372, 513, 850, 957
RseI	CAYNNNNRTG	1 cut(s)	287
SaqAI	TTAA	4 cut(s)	246, 305, 420, 639
Sau3AI	GATC	5 cut(s)	398, 603, 680, 751, 892
Sau96I	GGNCC	2 cut(s)	320, 788
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	2 cut(s)	318, 319
SetI	ASST	9 cut(s)	27, 118, 224, 254, 393, 638, 787, 861, 902
SfaNI	GCATC	1 cut(s)	153
SfcI	CTRYAG	2 cut(s)	590, 780
SinI	GGWCC	1 cut(s)	788
SmaI	CCCGGG	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	7 cut(s)	11, 45, 138, 180, 294, 342, 559
SseBI	AGGCCT	1 cut(s)	834
SsiI	CCGC	3 cut(s)	378, 612, 996
SspMI	CTAG	1 cut(s)	312
StuI	AGGCCT	1 cut(s)	834
StyD4I	CCNGG	2 cut(s)	316, 317
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	1 cut(s)	328
TaqI	TCGA	2 cut(s)	75, 393
TasI	AATT	7 cut(s)	11, 45, 138, 180, 294, 342, 559
TatI	WGTACW	1 cut(s)	229
Tru1I	TTAA	4 cut(s)	246, 305, 420, 639
Tru9I	TTAA	4 cut(s)	246, 305, 420, 639
TspDTI	ATGAA	2 cut(s)	701, 984
TspMI	CCCGGG	1 cut(s)	317
Tth111I	GACNNNGTC	1 cut(s)	83
VpaK11BI	GGWCC	1 cut(s)	788
VspI	ATTAAT	1 cut(s)	246
XapI	RAATTY	2 cut(s)	11, 45
XceI	RCATGY	1 cut(s)	216
XmaI	CCCGGG	1 cut(s)	317
XmnI	GAANNNNTTC	1 cut(s)	821
XspI	CTAG	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.