Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Forward (+)

6009811 .. 6010666

Gene Structure 856 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22457

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCAATCGTCCTCCTGATTTTGATGATTGTCATTATGGCTGTCTTCCTCTTTAGTTATTTTTTCCTAATGCTGGCTGCTGCCAAACGGGAGATTCAACTTTGTACCAAACTCATAAAACAAGATGAGGCAATTCGACAAGCTGAGACAAAGAGTATGAAAAAATCTGATGCAATTACAAGTGCAAGCCATGATGTTCGTAATGCTCTTGCTTGCATGACTGAATTGATCAAGATATCCTGCAATGAAGTTTCCCAGGGCTCCGAAATAAAGAAATATCTAACACAAATGGATGCATGTACTAAACACCTCTTAGGTATTTTGAACTCTATTCTTGATAAAAGCAAAATTGAAGCGGGTAAGATGGTCCTTGAAGATGAGGAATTTGACATATTCCAACTTGTTGAAGAGGTAATCGATTTCTTTCTTCCATCGGGTTTAAAGAAGGGCATAGATGTGGTGTTGGATCCTTATGATTGCTCTCTCCTAAAGTTTGCACACGTGAGCGGTGATAGGAGAAGGCTTAAGCAAATATTATGCAACTTATTAGGGAATGCTGTCAAATTTACTTCAGAGGGACAAGTCACAGTTCGTGCTTGGGTTCAGAAACCTACATTTGTTGTGTTTTTTGAACAAGACCAAAGAACAGTCAGATGGCATAAAAGCAGTGATTGGTGTTCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

228

Amino Acids

25.91

Weight (kDa)

7.56

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisKA	PF00512	55 - 120	4.3e-07	His Kinase A (phospho-acceptor) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	507
AciI	CCGC	2 cut(s)	356, 507
AclWI	GGATC	2 cut(s)	461, 474
AcsI	RAATTY	2 cut(s)	383, 563
AcuI	CTGAAG	1 cut(s)	555
AcvI	CACGTG	1 cut(s)	502
AfaI	GTAC	2 cut(s)	106, 301
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflII	CTTAAG	1 cut(s)	524
AflIII	ACRYGT	1 cut(s)	499
AgsI	TTSAA	7 cut(s)	98, 325, 353, 374, 407, 632, 681
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
Alw26I	GTCTC	1 cut(s)	140
AlwI	GGATC	2 cut(s)	461, 474
ApeKI	GCWGC	2 cut(s)	77, 80
ApoI	RAATTY	2 cut(s)	383, 563
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	367
BamHI	GGATCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	263
BbrPI	CACGTG	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	64, 67
BccI	CCATC	3 cut(s)	358, 439, 648
BciT130I	CCWGG	1 cut(s)	257
BclI	TGATCA	1 cut(s)	228
BcoDI	GTCTC	1 cut(s)	140
BfrI	CTTAAG	1 cut(s)	524
BisI	GCNGC	2 cut(s)	78, 81
BlsI	GCNGC	2 cut(s)	79, 82
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	2 cut(s)	262, 468
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	2 cut(s)	160, 283
BpiI	GAAGAC	1 cut(s)	37
Bsa29I	ATCGAT	1 cut(s)	417
BsaAI	YACGTR	1 cut(s)	502
BsaJI	CCNNGG	2 cut(s)	255, 256
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	257
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	2 cut(s)	255, 256
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	64, 67
BshVI	ATCGAT	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	591
BsmI	GAATGC	1 cut(s)	559
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	228, 466
BspACI	CCGC	2 cut(s)	356, 507
BspCNI	CTCAG	1 cut(s)	136
BspDI	ATCGAT	1 cut(s)	417
BspLI	GGNNCC	2 cut(s)	262, 468
BspPI	GGATC	2 cut(s)	461, 474
BspTI	CTTAAG	1 cut(s)	524
BsrBI	CCGCTC	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	255, 256
BssMI	GATC	2 cut(s)	228, 466
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	589, 649
Bst6I	CTCTTC	1 cut(s)	402
BstAFI	CTTAAG	1 cut(s)	524
BstBAI	YACGTR	1 cut(s)	502
BstC8I	GCNNGC	3 cut(s)	75, 187, 214
BstDEI	CTNAG	2 cut(s)	144, 313
BstF5I	GGATG	1 cut(s)	298
BstKTI	GATC	2 cut(s)	231, 469
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	2 cut(s)	228, 466
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	300
BstSCI	CCNGG	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	64, 67
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
Bsu15I	ATCGAT	1 cut(s)	417
BsuTUI	ATCGAT	1 cut(s)	417
BtsCI	GGATG	1 cut(s)	298
BtsI	GCAGTG	1 cut(s)	673
BtsIMutI	CAGTG	1 cut(s)	673
Cac8I	GCNNGC	3 cut(s)	75, 187, 214
Cfr13I	GGNCC	1 cut(s)	367
ClaI	ATCGAT	1 cut(s)	417
Csp6I	GTAC	2 cut(s)	105, 300
CviAII	CATG	4 cut(s)	191, 217, 297, 684
CviJI	RGCY	6 cut(s)	41, 77, 143, 189, 261, 523
CviKI_1	RGCY	6 cut(s)	41, 77, 143, 189, 261, 523
CviQI	GTAC	2 cut(s)	105, 300
DdeI	CTNAG	2 cut(s)	144, 313
DpnI	GATC	2 cut(s)	230, 468
DpnII	GATC	2 cut(s)	228, 466
DraI	TTTAAA	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco24I	GRGCYC	1 cut(s)	263
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	555
Eco72I	CACGTG	1 cut(s)	502
EcoRII	CCWGG	1 cut(s)	255
EcoRV	GATATC	1 cut(s)	237
EcoT22I	ATGCAT	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	263
FaeI	CATG	4 cut(s)	194, 220, 300, 687
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	4 cut(s)	190, 216, 296, 683
FauI	CCCGC	1 cut(s)	349
FbaI	TGATCA	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	78, 81
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	2 cut(s)	78, 81
GluI	GCNGC	2 cut(s)	78, 81
Hin1II	CATG	4 cut(s)	194, 220, 300, 687
HinfI	GANTC	1 cut(s)	94
HphI	GGTGA	1 cut(s)	521
Hpy188I	TCNGA	5 cut(s)	169, 265, 574, 606, 653
Hpy188III	TCNNGA	3 cut(s)	16, 232, 335
HpyAV	CCTTC	2 cut(s)	439, 513
HpyCH4III	ACNGT	2 cut(s)	589, 649
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	7 cut(s)	173, 185, 216, 243, 296, 497, 540
HpyF3I	CTNAG	2 cut(s)	144, 313
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	4 cut(s)	194, 220, 300, 687
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	2 cut(s)	228, 466
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	5 cut(s)	29, 59, 242, 253, 269
Lsp1109I	GCAGC	2 cut(s)	64, 67
LweI	GCATC	2 cut(s)	160, 283
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	1 cut(s)	583
MalI	GATC	2 cut(s)	230, 468
MbiI	CCGCTC	1 cut(s)	507
MboI	GATC	2 cut(s)	228, 466
MboII	GAAGA	4 cut(s)	37, 386, 419, 419
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	6 cut(s)	132, 174, 224, 348, 383, 563
MmeI	TCCRAC	2 cut(s)	421, 444
MnlI	CCTC	7 cut(s)	23, 59, 121, 320, 373, 403, 568
Mph1103I	ATGCAT	1 cut(s)	298
MseI	TTAA	2 cut(s)	440, 525
MslI	CAYNNNNRTG	1 cut(s)	455
MspCI	CTTAAG	1 cut(s)	524
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	1 cut(s)	257
NdeII	GATC	2 cut(s)	228, 466
NlaIII	CATG	4 cut(s)	194, 220, 300, 687
NlaIV	GGNNCC	2 cut(s)	262, 468
NmuCI	GTSAC	1 cut(s)	583
NsiI	ATGCAT	1 cut(s)	298
NspI	RCATGY	1 cut(s)	300
PasI	CCCWGGG	1 cut(s)	256
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	2 cut(s)	79, 82
PmaCI	CACGTG	1 cut(s)	502
PmlI	CACGTG	1 cut(s)	502
Ppu21I	YACGTR	1 cut(s)	502
Psp6I	CCWGG	1 cut(s)	255
PspCI	CACGTG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	262, 468
PspPI	GGNCC	1 cut(s)	367
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	2 cut(s)	106, 301
RsaNI	GTAC	2 cut(s)	105, 300
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	440, 525
SatI	GCNGC	2 cut(s)	78, 81
Sau3AI	GATC	2 cut(s)	228, 466
Sau96I	GGNCC	1 cut(s)	367
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	6 cut(s)	145, 312, 319, 414, 504, 613
SfaNI	GCATC	2 cut(s)	160, 283
SinI	GGWCC	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	6 cut(s)	132, 174, 224, 348, 383, 563
SsiI	CCGC	2 cut(s)	356, 507
SspI	AATATT	1 cut(s)	534
StyD4I	CCNGG	1 cut(s)	255
TaaI	ACNGT	2 cut(s)	589, 649
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	2 cut(s)	136, 417
TasI	AATT	6 cut(s)	132, 174, 224, 348, 383, 563
TatI	WGTACW	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	2 cut(s)	440, 525
Tru9I	TTAA	2 cut(s)	440, 525
TscAI	CASTG	1 cut(s)	673
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	2 cut(s)	77, 80
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	2 cut(s)	173, 261
TspRI	CASTG	1 cut(s)	673
Vha464I	CTTAAG	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	2 cut(s)	383, 563
XceI	RCATGY	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.