RLG00000000559

Multidrug resistance protein ABC transporter family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000934
Physical Location & Seq
Forward (+)
1979511 .. 1980274
764 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000559

Sequence Viewer

Length: 606 bp
ATGGGCAATTCCATGTCACACAAGCAAGTCCATGGCACTGGAAAAGTCATACTGTCGGATGGGTCGGTGCACGAGTTCAATAATCATGATCTAACAGTTGCTGAGCTGATGCTAGAGCACCCGCAACAAGTAGTGGTCGAATTCCGGGCAGCTGTCTCAGCAAAAAGACCAATCCCATTACCCGCAGATACAAAGCTGGACAACAAAAAGATTTACTTAATGCTTCCAATGAAGCGAGGGAAACCATTGTCAATGTCATCCGAAGATATTCGCGGTGTTCTTTCAAGTGCAAATTCACTTTTACGATCAAGATCATCATCACTGAAATTCTTGCCTCTGTTTGCAAGGATATGCCCTGCAGGAGATGCACATGCTTTTGTGTTGCCAAAGAAGGAATATAGCATGGAGAGGACGTCAGAATCGGTGGTGGTGAGGTCGTATCTGCCGGAGTTTGACATGGAGGAAAGTTTGGATGCGAGGCCAGAATTTTTGACTAGGCAGCTTTCCGGCAAGGCTACTTGGAAGCCTAATTTGGATACCATTAAGGAGAAGAAGGTTGAGAAGAAGCTGTCTCATTGGTACCTTACGTTCAAGTGGGTGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

202

Amino Acids

22.84

Weight (kDa)

9.45

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 1 - 183 1e-23 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 416
Acc65I GGTACC 1 cut(s) 579
AccB1I GGYRCC 1 cut(s) 579
AccII CGCG 1 cut(s) 273
AciI CCGC 3 cut(s) 122, 183, 273
AcsI RAATTY 4 cut(s) 140, 292, 326, 485
AcyI GRCGYC 1 cut(s) 413
AfaI GTAC 1 cut(s) 581
AgsI TTSAA 3 cut(s) 79, 285, 592
AjuI GAANNNNNNNTTGG 2 cut(s) 515, 547
AluBI AGCT 5 cut(s) 106, 152, 196, 502, 568
AluI AGCT 5 cut(s) 106, 152, 196, 502, 568
Alw21I GWGCWC 2 cut(s) 72, 120
Alw26I GTCTC 2 cut(s) 160, 576
Alw44I GTGCAC 1 cut(s) 68
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 1 cut(s) 479
ApaLI GTGCAC 1 cut(s) 68
ApeKI GCWGC 2 cut(s) 149, 499
ApoI RAATTY 4 cut(s) 140, 292, 326, 485
Asp700I GAANNNNTTC 1 cut(s) 267
Asp718I GGTACC 1 cut(s) 579
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 442
BaeGI GKGCMC 1 cut(s) 72
BanI GGYRCC 1 cut(s) 579
BauI CACGAG 1 cut(s) 71
Bbv12I GWGCWC 2 cut(s) 72, 120
BbvI GCAGC 2 cut(s) 161, 511
BccI CCATC 1 cut(s) 53
BciVI GTATCC 1 cut(s) 529
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 2 cut(s) 160, 576
BfaI CTAG 2 cut(s) 113, 495
BfmI CTRYAG 1 cut(s) 357
BfuI GTATCC 1 cut(s) 529
BisI GCNGC 2 cut(s) 150, 500
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 2 cut(s) 151, 501
Bme1390I CCNGG 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 581
BmrFI CCNGG 1 cut(s) 146
BmsI GCATC 3 cut(s) 99, 355, 463
Bpu1102I GCTNAGC 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 146
BsaBI GATNNNNATC 2 cut(s) 310, 316
BsaHI GRCGYC 1 cut(s) 413
BsaJI CCNNGG 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bse1I ACTGG 1 cut(s) 43
Bse8I GATNNNNATC 2 cut(s) 310, 316
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 3 cut(s) 64, 257, 478
BseJI GATNNNNATC 2 cut(s) 310, 316
BseMII CTCAG 2 cut(s) 93, 171
BseNI ACTGG 1 cut(s) 43
BseSI GKGCMC 1 cut(s) 72
BseXI GCAGC 2 cut(s) 161, 511
Bsh1236I CGCG 1 cut(s) 273
BshFI GGCC 1 cut(s) 481
BshNI GGYRCC 1 cut(s) 579
BsiHKAI GWGCWC 2 cut(s) 72, 120
BsiSI CCGG 3 cut(s) 145, 446, 507
BsmAI GTCTC 2 cut(s) 160, 576
BsnI GGCC 1 cut(s) 481
Bsp1286I GDGCHC 2 cut(s) 72, 120
Bsp143I GATC 3 cut(s) 88, 305, 311
Bsp1720I GCTNAGC 1 cut(s) 102
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 3 cut(s) 122, 183, 273
BspANI GGCC 1 cut(s) 481
BspCNI CTCAG 2 cut(s) 94, 170
BspFNI CGCG 1 cut(s) 273
BspHI TCATGA 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 581
BspMAI CTGCAG 1 cut(s) 361
BspT107I GGYRCC 1 cut(s) 579
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 3 cut(s) 88, 305, 311
BssNI GRCGYC 1 cut(s) 413
BssSI CACGAG 1 cut(s) 71
BssT1I CCWWGG 1 cut(s) 31
Bst2BI CACGAG 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 54, 97
BstACI GRCGYC 1 cut(s) 413
BstAPI GCANNNNNTGC 1 cut(s) 365
BstDEI CTNAG 2 cut(s) 102, 157
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 3 cut(s) 64, 257, 478
BstFNI CGCG 1 cut(s) 273
BstKTI GATC 3 cut(s) 91, 308, 314
BstMAI GTCTC 2 cut(s) 160, 576
BstMBI GATC 3 cut(s) 88, 305, 311
BstMWI GCNNNNNNNGC 2 cut(s) 158, 365
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 144
BstSFI CTRYAG 1 cut(s) 357
BstSLI GKGCMC 1 cut(s) 72
BstUI CGCG 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 161, 511
BstXI CCANNNNNNTGG 1 cut(s) 38
BsuI GTATCC 1 cut(s) 529
BsuRI GGCC 1 cut(s) 481
BtgI CCRYGG 1 cut(s) 31
BtsCI GGATG 3 cut(s) 64, 257, 478
BtsIMutI CAGTG 2 cut(s) 36, 320
CaiI CAGNNNCTG 1 cut(s) 101
CciI TCATGA 1 cut(s) 85
Csp6I GTAC 1 cut(s) 580
CviAII CATG 6 cut(s) 13, 32, 86, 371, 403, 457
CviJI RGCY 8 cut(s) 106, 152, 196, 481, 502, 515, 526, 568
CviKI_1 RGCY 8 cut(s) 106, 152, 196, 481, 502, 515, 526, 568
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 2 cut(s) 102, 157
DpnI GATC 3 cut(s) 90, 307, 313
DpnII GATC 3 cut(s) 88, 305, 311
Eco130I CCWWGG 1 cut(s) 31
EcoRI GAATTC 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 6 cut(s) 16, 35, 89, 374, 406, 460
FaiI YATR 9 cut(s) 14, 33, 50, 87, 352, 372, 399, 404, 458
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FatI CATG 6 cut(s) 12, 31, 85, 370, 402, 456
FauI CCCGC 2 cut(s) 129, 190
Fnu4HI GCNGC 2 cut(s) 150, 500
FokI GGATG 3 cut(s) 71, 244, 485
Fsp4HI GCNGC 2 cut(s) 150, 500
FspBI CTAG 2 cut(s) 113, 495
GluI GCNGC 2 cut(s) 150, 500
HaeIII GGCC 1 cut(s) 481
HapII CCGG 3 cut(s) 145, 446, 507
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 6 cut(s) 16, 35, 89, 374, 406, 460
HinfI GANTC 1 cut(s) 419
HpaII CCGG 3 cut(s) 145, 446, 507
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 3 cut(s) 58, 262, 418
Hpy188III TCNNGA 2 cut(s) 86, 309
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 2 cut(s) 385, 547
HpyCH4III ACNGT 2 cut(s) 54, 97
HpyCH4IV ACGT 2 cut(s) 413, 587
HpyCH4V TGCA 5 cut(s) 70, 290, 344, 359, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 365
HpyF3I CTNAG 2 cut(s) 102, 157
HpySE526I ACGT 2 cut(s) 413, 587
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 6 cut(s) 16, 35, 89, 374, 406, 460
KpnI GGTACC 1 cut(s) 583
Kzo9I GATC 3 cut(s) 88, 305, 311
LpnPI CCDG 8 cut(s) 24, 158, 182, 345, 369, 459, 495, 520
Lsp1109I GCAGC 2 cut(s) 161, 511
LweI GCATC 3 cut(s) 99, 355, 463
MaeI CTAG 2 cut(s) 113, 495
MaeII ACGT 2 cut(s) 413, 587
MaeIII GTNAC 1 cut(s) 15
MalI GATC 3 cut(s) 90, 307, 313
MboI GATC 3 cut(s) 88, 305, 311
MboII GAAGA 3 cut(s) 275, 562, 574
MhlI GDGCHC 2 cut(s) 72, 120
MluCI AATT 6 cut(s) 7, 140, 292, 326, 485, 529
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 6 cut(s) 230, 345, 402, 426, 454, 471
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 2 cut(s) 218, 543
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 3 cut(s) 145, 446, 507
MspR9I CCNGG 1 cut(s) 146
MvnI CGCG 1 cut(s) 273
MwoI GCNNNNNNNGC 2 cut(s) 158, 365
NciI CCSGG 1 cut(s) 146
NcoI CCATGG 1 cut(s) 31
NdeII GATC 3 cut(s) 88, 305, 311
NlaIII CATG 6 cut(s) 16, 35, 89, 374, 406, 460
NlaIV GGNNCC 1 cut(s) 581
NmuCI GTSAC 1 cut(s) 15
NspI RCATGY 1 cut(s) 374
PagI TCATGA 1 cut(s) 85
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 1 cut(s) 419
PkrI GCNGC 2 cut(s) 151, 501
PspN4I GGNNCC 1 cut(s) 581
PsrI GAACNNNNNNTAC 2 cut(s) 572, 604
PstI CTGCAG 1 cut(s) 361
PstNI CAGNNNCTG 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
SaqAI TTAA 2 cut(s) 218, 543
SatI GCNGC 2 cut(s) 150, 500
Sau3AI GATC 3 cut(s) 88, 305, 311
SbfI CCTGCAGG 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 146
SdaI CCTGCAGG 1 cut(s) 361
SduI GDGCHC 2 cut(s) 72, 120
SfaNI GCATC 3 cut(s) 99, 355, 463
SfcI CTRYAG 1 cut(s) 357
Sse8387I CCTGCAGG 1 cut(s) 361
Sse9I AATT 6 cut(s) 7, 140, 292, 326, 485, 529
SsiI CCGC 3 cut(s) 122, 183, 273
SspMI CTAG 2 cut(s) 113, 495
StyD4I CCNGG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 2 cut(s) 54, 97
TaiI ACGT 2 cut(s) 416, 590
TaqI TCGA 1 cut(s) 138
TasI AATT 6 cut(s) 7, 140, 292, 326, 485, 529
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 2 cut(s) 218, 543
Tru9I TTAA 2 cut(s) 218, 543
TscAI CASTG 2 cut(s) 43, 327
TseFI GTSAC 1 cut(s) 15
TseI GCWGC 2 cut(s) 149, 499
Tsp45I GTSAC 1 cut(s) 15
TspDTI ATGAA 1 cut(s) 245
TspRI CASTG 2 cut(s) 43, 327
VneI GTGCAC 1 cut(s) 68
XapI RAATTY 4 cut(s) 140, 292, 326, 485
XceI RCATGY 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 2 cut(s) 113, 495
ZraI GACGTC 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.