Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Forward (+)

946912 .. 947205

Gene Structure 294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG007200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGGCTGTCTTCCTCTTGATTTATTTTTTCCTAATGCTGGGTGCTGCCAAACGTGAGATTCAACTTTGCACCAAACTCATAAGACAGAATGAGGCAACTCGACAAGCTGAGACAAAGAGTATGAACAAATCTGATGCAATTACAAGTGCAAGCCATGATGTTCGTAATGCTCTTGCTTGCATGACTGAATTGATCAAAATATCCTTTGATGAAGTTGCCCAGGGCTCTGAAATAAGGGAATATCTGACACAAATGGACGCATGTACAAAAGACCTCTTAGGTACGAGAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

97

Amino Acids

10.91

Weight (kDa)

6.56

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	265, 283
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw26I	GTCTC	1 cut(s)	104
ApeKI	GCWGC	1 cut(s)	44
BanII	GRGCYC	1 cut(s)	227
BbvI	GCAGC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	221
BclI	TGATCA	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	104
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	124
BsaJI	CCNNGG	2 cut(s)	219, 220
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	2 cut(s)	219, 220
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMII	CTCAG	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	37
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp1407I	TGTACA	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	100
BsrGI	TGTACA	1 cut(s)	263
BssECI	CCNNGG	2 cut(s)	219, 220
BssMI	GATC	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	221
BstAUI	TGTACA	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	151, 178
BstDEI	CTNAG	2 cut(s)	108, 277
BstKTI	GATC	1 cut(s)	195
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	192
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	264
BstSCI	CCNGG	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	31
Cac8I	GCNNGC	2 cut(s)	151, 178
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	264, 282
CviAII	CATG	3 cut(s)	155, 181, 261
CviJI	RGCY	4 cut(s)	5, 107, 153, 225
CviKI_1	RGCY	4 cut(s)	5, 107, 153, 225
CviQI	GTAC	2 cut(s)	264, 282
DdeI	CTNAG	2 cut(s)	108, 277
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	227
FaeI	CATG	3 cut(s)	158, 184, 264
FaiI	YATR	5 cut(s)	80, 122, 156, 182, 262
FatI	CATG	3 cut(s)	154, 180, 260
FbaI	TGATCA	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	45
GsaI	CCCAGC	1 cut(s)	41
HgaI	GACGC	1 cut(s)	266
Hin1II	CATG	3 cut(s)	158, 184, 264
HinfI	GANTC	1 cut(s)	58
Hpy188I	TCNGA	3 cut(s)	133, 229, 246
Hpy188III	TCNNGA	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	52
HpyCH4V	TGCA	4 cut(s)	69, 137, 149, 180
HpyF3I	CTNAG	2 cut(s)	108, 277
HpySE526I	ACGT	1 cut(s)	52
Hsp92II	CATG	3 cut(s)	158, 184, 264
Ksp22I	TGATCA	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	192
LpnPI	CCDG	3 cut(s)	23, 206, 233
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	124
MaeII	ACGT	1 cut(s)	52
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	2 cut(s)	138, 188
MnlI	CCTC	3 cut(s)	23, 85, 284
MseI	TTAA	1 cut(s)	292
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
NdeII	GATC	1 cut(s)	192
NlaIII	CATG	3 cut(s)	158, 184, 264
NspI	RCATGY	1 cut(s)	264
PasI	CCCWGGG	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	219
RsaI	GTAC	2 cut(s)	265, 283
RsaNI	GTAC	2 cut(s)	264, 282
SaqAI	TTAA	1 cut(s)	292
SatI	GCNGC	1 cut(s)	45
Sau3AI	GATC	1 cut(s)	192
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	4 cut(s)	55, 109, 276, 283
SfaNI	GCATC	1 cut(s)	124
Sse9I	AATT	2 cut(s)	138, 188
StyD4I	CCNGG	1 cut(s)	219
TaiI	ACGT	1 cut(s)	55
TaqI	TCGA	1 cut(s)	100
TasI	AATT	2 cut(s)	138, 188
TatI	WGTACW	1 cut(s)	263
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	292
Tru9I	TTAA	1 cut(s)	292
TseI	GCWGC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	137, 225
XceI	RCATGY	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.