Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Reverse (-)

38396746 .. 38400473

Gene Structure 3728 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0345800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCAAGTTCACAGTTCCACTGTCTGCAATCAGTCAGAGTTTCTTCCCCGTCTCGGCTTTCCATATCTACTTCATTTGATCATGGTAGAGTGAGTTTCCAAAGAAAGAGCAATTGTCTTGTTTATGCTTCCACCAACAACTTCAACAGCGACCTTCATCTTCAATCAAAGGTCGAAACAGTGTTAGACAGTGTAAAATGGGATGACAAAGGTTTAGCGGTTGCAATAGCTCAAAATGTTGACACAGGAGTCATCTTAATGCAAGGTTTTGCAAACAGGGAAGCAGTGGCTACAACAATCTCCTCCCGGAAGGCCACATTCTACAGTCGGTCGCGATCAACACTCTGGACAAAGGGAGAGACCTCCAATAATTTCATTAATGTCCATGACATCTTCCTTGATTGTGATCGAGACTCTATAATATACCTAGGGAAGCCTGATGGCCCTACTTGCCACACGGGAGCAGAGACTTGCTATTACACCTCGGTGATTGATTTGTTAGAAGATCAGCAGAGCGGAGGAGATAAATTCCCTTTGACCACTCTGAACTCTTTAGAATCTACAATTGCAAAGCGAAAAGGAGAACTAGAAGTCCCACAATCTGGAAAGCCCTCATGGACGAGACGACTACTACTTGATGAGAAATTGTTGTGTTCAAAAATCAGGGAAGAGGCAGATGAGCTATGTCGAACATTAGAGGAGAATGAGGATAAGTCACATACTGCCTCAGAGATGGGAGATGTGCTCTATCATTCCATGGTTCTGCTGGCCCTTAAAGATGGAAAAATGGAAGAAGTTCTAGAAATTCTACGACGTAGATTTTCTCAGTCGGGTATCGAGGAAAAGAGAAGTCGCAAGACACAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4228

Protein Analysis

289

Amino Acids

32.42

Weight (kDa)

6.2

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRA-CH	PF01502	87 - 160	9.3e-28	Phosphoribosyl-AMP cyclohydrolase
PRA-PH	PF01503	200 - 273	2.6e-11	Phosphoribosyl-ATP pyrophosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	516
AccII	CGCG	1 cut(s)	334
AciI	CCGC	2 cut(s)	218, 516
AcsI	RAATTY	2 cut(s)	527, 804
AfiI	CCNNNNNNNGG	2 cut(s)	54, 602
AgsI	TTSAA	3 cut(s)	145, 164, 657
AleI	CACNNNNGTG	1 cut(s)	485
AloI	GAACNNNNNNTCC	2 cut(s)	576, 608
AluBI	AGCT	2 cut(s)	230, 682
AluI	AGCT	2 cut(s)	230, 682
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	5 cut(s)	57, 353, 405, 461, 616
AoxI	GGCC	3 cut(s)	312, 442, 768
ApoI	RAATTY	2 cut(s)	527, 804
AseI	ATTAAT	1 cut(s)	378
Asp700I	GAANNNNTTC	1 cut(s)	795
AspA2I	CCTAGG	1 cut(s)	427
AspS9I	GGNCC	2 cut(s)	443, 769
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	499
AvrII	CCTAGG	1 cut(s)	427
Bbv12I	GWGCWC	1 cut(s)	747
BccI	CCATC	3 cut(s)	434, 727, 773
BclI	TGATCA	1 cut(s)	79
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	5 cut(s)	57, 353, 405, 461, 616
BfaI	CTAG	4 cut(s)	428, 587, 800, 868
BfmI	CTRYAG	1 cut(s)	322
BlnI	CCTAGG	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	307
BmgT120I	GGNCC	2 cut(s)	443, 769
BmrFI	CCNGG	1 cut(s)	307
BplI	GAGNNNNNCTC	2 cut(s)	729, 761
BpuMI	CCSGG	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	3 cut(s)	427, 483, 756
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 602
Bse8I	GATNNNNATC	1 cut(s)	405
BseDI	CCNNGG	3 cut(s)	427, 483, 756
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	2 cut(s)	54, 602
BseMII	CTCAG	2 cut(s)	741, 839
BseRI	GAGGAG	3 cut(s)	292, 534, 713
Bsh1236I	CGCG	1 cut(s)	334
Bsh1285I	CGRYCG	1 cut(s)	332
BshFI	GGCC	3 cut(s)	314, 444, 770
BsiEI	CGRYCG	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	747
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	2 cut(s)	54, 602
BsmAI	GTCTC	5 cut(s)	57, 353, 405, 461, 616
BsmBI	CGTCTC	2 cut(s)	57, 616
BsmFI	GGGAC	1 cut(s)	578
BsnI	GGCC	3 cut(s)	314, 444, 770
Bso31I	GGTCTC	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	4 cut(s)	79, 335, 406, 505
Bsp19I	CCATGG	1 cut(s)	756
Bsp68I	TCGCGA	1 cut(s)	334
BspACI	CCGC	2 cut(s)	218, 516
BspANI	GGCC	3 cut(s)	314, 444, 770
BspCNI	CTCAG	2 cut(s)	740, 838
BspFNI	CGCG	1 cut(s)	334
BspTNI	GGTCTC	1 cut(s)	353
BsrBI	CCGCTC	1 cut(s)	516
BssECI	CCNNGG	3 cut(s)	427, 483, 756
BssMI	GATC	4 cut(s)	79, 335, 406, 505
BssT1I	CCWWGG	2 cut(s)	427, 756
Bst4CI	ACNGT	5 cut(s)	15, 23, 181, 191, 326
Bst6I	CTCTTC	1 cut(s)	663
BstC8I	GCNNGC	1 cut(s)	768
BstDEI	CTNAG	2 cut(s)	727, 825
BstDSI	CCRYGG	1 cut(s)	756
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	334
BstKTI	GATC	4 cut(s)	82, 338, 409, 508
BstMAI	GTCTC	5 cut(s)	57, 353, 405, 461, 616
BstMBI	GATC	4 cut(s)	79, 335, 406, 505
BstMCI	CGRYCG	1 cut(s)	332
BstMWI	GCNNNNNNNGC	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	305
BstSFI	CTRYAG	1 cut(s)	322
BstUI	CGCG	1 cut(s)	334
BsuRI	GGCC	3 cut(s)	314, 444, 770
BtgI	CCRYGG	1 cut(s)	756
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	4 cut(s)	19, 186, 196, 291
BtuMI	TCGCGA	1 cut(s)	334
Cac8I	GCNNGC	1 cut(s)	768
Cfr13I	GGNCC	2 cut(s)	443, 769
CviAII	CATG	4 cut(s)	83, 386, 615, 757
DdeI	CTNAG	2 cut(s)	727, 825
DpnI	GATC	4 cut(s)	81, 337, 408, 507
DpnII	GATC	4 cut(s)	79, 335, 406, 505
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
Eco130I	CCWWGG	2 cut(s)	427, 756
Eco31I	GGTCTC	1 cut(s)	353
EcoT14I	CCWWGG	2 cut(s)	427, 756
ErhI	CCWWGG	2 cut(s)	427, 756
Esp3I	CGTCTC	2 cut(s)	57, 616
FaeI	CATG	4 cut(s)	86, 389, 618, 760
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	4 cut(s)	82, 385, 614, 756
FbaI	TGATCA	1 cut(s)	79
FokI	GGATG	1 cut(s)	215
FspBI	CTAG	4 cut(s)	428, 587, 800, 868
HaeIII	GGCC	3 cut(s)	314, 444, 770
HapII	CCGG	1 cut(s)	307
Hin1II	CATG	4 cut(s)	86, 389, 618, 760
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	3 cut(s)	249, 413, 557
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	1 cut(s)	499
Hpy166II	GTNNAC	2 cut(s)	11, 241
Hpy188I	TCNGA	3 cut(s)	38, 546, 730
Hpy188III	TCNNGA	5 cut(s)	333, 346, 410, 603, 800
Hpy8I	GTNNAC	2 cut(s)	11, 241
Hpy99I	CGWCG	1 cut(s)	816
HpyAV	CCTTC	2 cut(s)	164, 304
HpyCH4III	ACNGT	5 cut(s)	15, 23, 181, 191, 326
HpyCH4IV	ACGT	1 cut(s)	814
HpyCH4V	TGCA	5 cut(s)	28, 224, 262, 272, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	450
HpyF3I	CTNAG	2 cut(s)	727, 825
HpySE526I	ACGT	1 cut(s)	814
Hsp92II	CATG	4 cut(s)	86, 389, 618, 760
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	4 cut(s)	79, 335, 406, 505
LmnI	GCTCC	1 cut(s)	461
LpnPI	CCDG	8 cut(s)	231, 262, 320, 331, 450, 588, 649, 752
MaeI	CTAG	4 cut(s)	428, 587, 800, 868
MaeII	ACGT	1 cut(s)	814
MaeIII	GTNAC	1 cut(s)	714
MalI	GATC	4 cut(s)	81, 337, 408, 507
MbiI	CCGCTC	1 cut(s)	516
MboI	GATC	4 cut(s)	79, 335, 406, 505
MboII	GAAGA	6 cut(s)	36, 152, 385, 515, 680, 803
MfeI	CAATTG	2 cut(s)	112, 564
MhlI	GDGCHC	1 cut(s)	747
MluCI	AATT	6 cut(s)	112, 370, 527, 564, 644, 804
MlyI	GAGTC	2 cut(s)	258, 407
MroXI	GAANNNNTTC	1 cut(s)	795
MseI	TTAA	3 cut(s)	257, 378, 774
MslI	CAYNNNNRTG	2 cut(s)	257, 485
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	307
MunI	CAATTG	2 cut(s)	112, 564
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	450
NciI	CCSGG	1 cut(s)	307
NcoI	CCATGG	1 cut(s)	756
NdeII	GATC	4 cut(s)	79, 335, 406, 505
NlaIII	CATG	4 cut(s)	86, 389, 618, 760
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	714
NruI	TCGCGA	1 cut(s)	334
OliI	CACNNNNGTG	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	795
PfeI	GAWTC	1 cut(s)	557
PflMI	CCANNNNNTGG	1 cut(s)	602
PfoI	TCCNGGA	1 cut(s)	305
PleI	GAGTC	2 cut(s)	257, 407
PpsI	GAGTC	2 cut(s)	257, 407
PshBI	ATTAAT	1 cut(s)	378
PspPI	GGNCC	2 cut(s)	443, 769
RruI	TCGCGA	1 cut(s)	334
RseI	CAYNNNNRTG	2 cut(s)	257, 485
SaqAI	TTAA	3 cut(s)	257, 378, 774
Sau3AI	GATC	4 cut(s)	79, 335, 406, 505
Sau96I	GGNCC	2 cut(s)	443, 769
SchI	GAGTC	2 cut(s)	258, 407
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	1 cut(s)	747
SfcI	CTRYAG	1 cut(s)	322
SmiMI	CAYNNNNRTG	2 cut(s)	257, 485
Sse9I	AATT	6 cut(s)	112, 370, 527, 564, 644, 804
SsiI	CCGC	2 cut(s)	218, 516
SspMI	CTAG	4 cut(s)	428, 587, 800, 868
StyD4I	CCNGG	1 cut(s)	305
StyI	CCWWGG	2 cut(s)	427, 756
TaaI	ACNGT	5 cut(s)	15, 23, 181, 191, 326
TaiI	ACGT	1 cut(s)	817
TaqI	TCGA	4 cut(s)	174, 409, 688, 837
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	6 cut(s)	112, 370, 527, 564, 644, 804
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	3 cut(s)	257, 378, 774
Tru9I	TTAA	3 cut(s)	257, 378, 774
TscAI	CASTG	4 cut(s)	26, 186, 196, 291
TseFI	GTSAC	1 cut(s)	714
Tsp45I	GTSAC	1 cut(s)	714
TspDTI	ATGAA	3 cut(s)	63, 146, 364
TspRI	CASTG	4 cut(s)	26, 186, 196, 291
Van91I	CCANNNNNTGG	1 cut(s)	602
VspI	ATTAAT	1 cut(s)	378
XapI	RAATTY	2 cut(s)	527, 804
XbaI	TCTAGA	1 cut(s)	799
XcmI	CCANNNNNNNNNTGG	1 cut(s)	763
XmaJI	CCTAGG	1 cut(s)	427
XmnI	GAANNNNTTC	1 cut(s)	795
XspI	CTAG	4 cut(s)	428, 587, 800, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.