RLG00000015530

Histidine kinase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
67576525 .. 67578707
2183 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015530

Sequence Viewer

Length: 1620 bp
ATGGCTGTCTTCCTCTTGATTTATTTCTTCCTAATGCTGGGTGCTGCCAAACGGGAGATTCAACTTTGCACCAAACTCATAAGACAGAATGAGGCAACTCGACAAGCTGAGACAAAGAGTATGAAAAAATCTGATGCAATTACAAGTGCAAGCCATGATGTTCGTAATGCTCTTGCTTGCATGACTGAATTGATCAAAATATCCTTTGATGAAGTTGCCCAGGGCTCTGAAATAAGGGAATATCTGACACAAATGGACGCCTGTACAAAAGACCTCTTTGGTATGTTGAACTCTATTCTTGATAAAAGCAAAATTGAAGTGGGTAAGATGGTACTTGAAGACGAAGAGTTTGACATATCGCGACTTGTTAAGGAGGTAGTTGATTTCTTTCTTCCATCGGGTTTAAAGAAGGGGATAGATGTGGTGTTGGATCCTCATGATTGCTCTCTTCTAAAGTTTGCACATGTGAAAGGTGACAAGGGAAGGCTTAAGCAGATATTATGCAACTTATTAGGGAATGCTGTCAAATTTACTTCAGAGGGACATGTAACAGTTCGTGCTTGGGTTCAGAAACCTAGTTTCATGAATTCAATCACTGCTGCTAATTCTGATTTGAATAATAGTTTCTTGAAGCATTTGTTTTGTTTTTTGAACTACAAGAACATGACCAAAGAACAATTAGATGGCATCAAAGCAGTGAAGGTGGTTCAAAATGATCCAAATTTTTTGGAATTTGTTTTTGAGGTGGACGGTACAGTGAGGGGAATTGCCAAGGAGAAGCAAAAAGAAGTGTTTGAAAACTATGTTCAAGTCAAAGAAAAAGCTCATGGAGAAGGAGGTACTGGCTTAGGACCTGGTATTGTTCAGTCTCTAGTACGCTTGATGCACGGAGAAATAGGAACTGTGGACAAGGAGATCGGTGAAAAAGGGACATGCTTCAGGTTTAATGTTCTCCTGAGAGCTATTACTGTGTATGAGGATCATATAAAATTACAAGAAGACCTTGAATTGGGAGGTGACCCTAATTATGATGACAGAGATCAACAATTGGGATTAATAGCAGCTATACGCACACCAAATGCAAACTCCGGGTTGACCATAGTTCCTAGTCTGAAGCTCACACCACTTGGAAGCCCCCGGTTGAATGTATTCCGCAGCACTCCTAGTAGTCCTAAGGTAGAGGAATCCATTGTTGTACTGCTGATTAAAAATGAAGAGCGACGGAGAATAGTACACCAGTTCATGAAGGGTATCCTTGGGATAAAGGACCGTTTGGTTAGAAATCCGCAGTCTCATAGATTAATGGACTTGAGTGGCCTTGATCCGGATGATGTCATCATAAAAAGGGCACTTCATGGTACTCATCTTTTCGAAGTGGTAAGATTTCTTCCAGAGTATGGGGATGCACTACCAAATGGATCTGCAGGGGTCACATTTCAGGTTGGATCAAAAGTAGTCTCTCGAGCTCCTAGCTCATCAAGATATCAGTTACATACTGATGATGAATCTGATATCTCATATTCACCAATCCAATGTCATGATCAGTCTGATAATGTTGGCTCTACGCCAAGAAACTCACCAGTTGGTCATGACCACCCACTTCCGCATAGAGATACATGA

Protein Analysis

540

Amino Acids

60.12

Weight (kDa)

6.51

Isoelectric Point (pI)

33.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c PF02518 243 - 318 5.3e-09 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1397
AccII CGCG 1 cut(s) 361
AccIII TCCGGA 1 cut(s) 1324
AciI CCGC 3 cut(s) 1153, 1286, 1604
AclWI GGATC 7 cut(s) 425, 438, 710, 987, 1316, 1426, 1453
AcsI RAATTY 4 cut(s) 527, 586, 721, 731
AcuI CTGAAG 3 cut(s) 519, 922, 1133
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 8 cut(s) 265, 333, 754, 841, 876, 1197, 1233, 1360
AfiI CCNNNNNNNGG 4 cut(s) 37, 1009, 1324, 1397
AflII CTTAAG 1 cut(s) 488
AflIII ACRYGT 2 cut(s) 463, 544
AjnI CCWGG 2 cut(s) 219, 853
AluBI AGCT 7 cut(s) 107, 824, 962, 1064, 1117, 1466, 1473
AluI AGCT 7 cut(s) 107, 824, 962, 1064, 1117, 1466, 1473
Alw21I GWGCWC 1 cut(s) 1468
Alw26I GTCTC 4 cut(s) 104, 873, 1296, 1462
AlwI GGATC 7 cut(s) 425, 438, 710, 987, 1316, 1426, 1453
Ama87I CYCGRG 1 cut(s) 1461
Aor13HI TCCGGA 1 cut(s) 1324
AoxI GGCC 1 cut(s) 1315
ApeKI GCWGC 4 cut(s) 44, 599, 1061, 1155
ApoI RAATTY 4 cut(s) 527, 586, 721, 731
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AseI ATTAAT 2 cut(s) 1055, 1301
Asp700I GAANNNNTTC 1 cut(s) 1148
AspS9I GGNCC 2 cut(s) 851, 1267
AsuC2I CCSGG 2 cut(s) 1090, 1138
AsuHPI GGTGA 5 cut(s) 485, 932, 1028, 1515, 1569
AsuII TTCGAA 1 cut(s) 1371
AvaI CYCGRG 1 cut(s) 1461
AvaII GGWCC 2 cut(s) 851, 1267
AxyI CCTNAGG 1 cut(s) 1173
BaeGI GKGCMC 1 cut(s) 1351
BamHI GGATCC 1 cut(s) 430
BanII GRGCYC 2 cut(s) 227, 1468
BarI GAAGNNNNNNTAC 2 cut(s) 1371, 1403
BbsI GAAGAC 2 cut(s) 345, 1005
Bbv12I GWGCWC 1 cut(s) 1468
BbvI GCAGC 4 cut(s) 31, 586, 1073, 1167
BccI CCATC 3 cut(s) 322, 403, 677
BciT130I CCWGG 2 cut(s) 221, 855
BciVI GTATCC 1 cut(s) 1262
BclI TGATCA 2 cut(s) 192, 1540
BcnI CCSGG 2 cut(s) 1090, 1138
BcoDI GTCTC 4 cut(s) 104, 873, 1296, 1462
BfaI CTAG 5 cut(s) 576, 872, 1107, 1164, 1470
BfmI CTRYAG 1 cut(s) 1422
BfrI CTTAAG 1 cut(s) 488
BfuI GTATCC 1 cut(s) 1262
BisI GCNGC 4 cut(s) 45, 600, 1062, 1156
BlsI GCNGC 4 cut(s) 46, 601, 1063, 1157
Bme1390I CCNGG 4 cut(s) 221, 855, 1090, 1138
Bme18I GGWCC 2 cut(s) 851, 1267
BmeT110I CYCGRG 1 cut(s) 1461
BmgT120I GGNCC 2 cut(s) 851, 1267
BmiI GGNNCC 1 cut(s) 432
BmrFI CCNGG 4 cut(s) 221, 855, 1090, 1138
BmsI GCATC 4 cut(s) 124, 696, 873, 1393
BpiI GAAGAC 2 cut(s) 345, 1005
Bpu10I CCTNAGC 1 cut(s) 847
Bpu14I TTCGAA 1 cut(s) 1371
BpuEI CTTGAG 1 cut(s) 1330
BpuMI CCSGG 2 cut(s) 1090, 1138
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 5 cut(s) 219, 220, 771, 1136, 1255
BsaWI WCCGGW 1 cut(s) 1324
Bsc4I CCNNNNNNNGG 4 cut(s) 37, 1009, 1324, 1397
Bse1I ACTGG 3 cut(s) 847, 1237, 1580
Bse21I CCTNAGG 1 cut(s) 1173
BseAI TCCGGA 1 cut(s) 1324
BseBI CCWGG 2 cut(s) 221, 855
BseDI CCNNGG 5 cut(s) 219, 220, 771, 1136, 1255
BseGI GGATG 2 cut(s) 1333, 1408
BseLI CCNNNNNNNGG 4 cut(s) 37, 1009, 1324, 1397
BseMII CTCAG 2 cut(s) 99, 947
BseNI ACTGG 3 cut(s) 847, 1237, 1580
BseSI GKGCMC 1 cut(s) 1351
BseXI GCAGC 4 cut(s) 31, 586, 1073, 1167
BseYI CCCAGC 1 cut(s) 37
Bsh1236I CGCG 1 cut(s) 361
BshFI GGCC 1 cut(s) 1317
BsiHKAI GWGCWC 1 cut(s) 1468
BsiHKCI CYCGRG 1 cut(s) 1461
BsiSI CCGG 3 cut(s) 1089, 1138, 1325
BslFI GGGAC 2 cut(s) 555, 943
BslI CCNNNNNNNGG 4 cut(s) 37, 1009, 1324, 1397
BsmAI GTCTC 4 cut(s) 104, 873, 1296, 1462
BsmFI GGGAC 2 cut(s) 555, 943
BsmI GAATGC 1 cut(s) 523
BsnI GGCC 1 cut(s) 1317
BsoBI CYCGRG 1 cut(s) 1461
Bsp119I TTCGAA 1 cut(s) 1371
Bsp1286I GDGCHC 3 cut(s) 227, 1351, 1468
Bsp13I TCCGGA 1 cut(s) 1324
Bsp1407I TGTACA 1 cut(s) 263
Bsp68I TCGCGA 1 cut(s) 361
BspACI CCGC 3 cut(s) 1153, 1286, 1604
BspANI GGCC 1 cut(s) 1317
BspCNI CTCAG 2 cut(s) 100, 948
BspEI TCCGGA 1 cut(s) 1324
BspFNI CGCG 1 cut(s) 361
BspHI TCATGA 5 cut(s) 436, 582, 1242, 1537, 1588
BspLI GGNNCC 1 cut(s) 432
BspMAI CTGCAG 1 cut(s) 1426
BspPI GGATC 7 cut(s) 425, 438, 710, 987, 1316, 1426, 1453
BspQI GCTCTTC 1 cut(s) 1209
BspT104I TTCGAA 1 cut(s) 1371
BspTI CTTAAG 1 cut(s) 488
BsrGI TGTACA 1 cut(s) 263
BsrI ACTGG 3 cut(s) 847, 1237, 1580
BssECI CCNNGG 5 cut(s) 219, 220, 771, 1136, 1255
BssNI GRCGYC 1 cut(s) 258
BssT1I CCWWGG 2 cut(s) 771, 1255
Bst2UI CCWGG 2 cut(s) 221, 855
Bst4CI ACNGT 6 cut(s) 553, 752, 757, 904, 970, 1271
Bst6I CTCTTC 3 cut(s) 339, 453, 1209
BstACI GRCGYC 1 cut(s) 258
BstAFI CTTAAG 1 cut(s) 488
BstAUI TGTACA 1 cut(s) 263
BstBI TTCGAA 1 cut(s) 1371
BstC8I GCNNGC 2 cut(s) 151, 178
BstDEI CTNAG 4 cut(s) 108, 847, 956, 1173
BstEII GGTNACC 1 cut(s) 1016
BstF5I GGATG 2 cut(s) 1333, 1408
BstFNI CGCG 1 cut(s) 361
BstMAI GTCTC 4 cut(s) 104, 873, 1296, 1462
BstNI CCWGG 2 cut(s) 221, 855
BstNSI RCATGY 3 cut(s) 467, 548, 936
BstPI GGTNACC 1 cut(s) 1016
BstSCI CCNGG 4 cut(s) 219, 853, 1088, 1136
BstSFI CTRYAG 1 cut(s) 1422
BstSLI GKGCMC 1 cut(s) 1351
BstUI CGCG 1 cut(s) 361
BstV1I GCAGC 4 cut(s) 31, 586, 1073, 1167
BstV2I GAAGAC 2 cut(s) 345, 1005
BstX2I RGATCY 2 cut(s) 430, 1418
BstYI RGATCY 2 cut(s) 430, 1418
Bsu36I CCTNAGG 1 cut(s) 1173
BsuI GTATCC 1 cut(s) 1262
BsuRI GGCC 1 cut(s) 1317
BtsCI GGATG 2 cut(s) 1333, 1408
BtsI GCAGTG 2 cut(s) 594, 702
BtsIMutI CAGTG 3 cut(s) 594, 702, 762
BtuMI TCGCGA 1 cut(s) 361
Cac8I GCNNGC 2 cut(s) 151, 178
CciI TCATGA 5 cut(s) 436, 582, 1242, 1537, 1588
Cfr13I GGNCC 2 cut(s) 851, 1267
CseI GACGC 1 cut(s) 266
CsiI ACCWGGT 1 cut(s) 853
Csp6I GTAC 8 cut(s) 264, 332, 753, 840, 875, 1196, 1232, 1359
CviQI GTAC 8 cut(s) 264, 332, 753, 840, 875, 1196, 1232, 1359
DdeI CTNAG 4 cut(s) 108, 847, 956, 1173
DraI TTTAAA 1 cut(s) 405
Eam1104I CTCTTC 3 cut(s) 339, 453, 1209
EarI CTCTTC 3 cut(s) 339, 453, 1209
Ecl136II GAGCTC 1 cut(s) 1466
Eco130I CCWWGG 2 cut(s) 771, 1255
Eco24I GRGCYC 2 cut(s) 227, 1468
Eco32I GATATC 2 cut(s) 1484, 1513
Eco47I GGWCC 2 cut(s) 851, 1267
Eco53kI GAGCTC 1 cut(s) 1466
Eco57I CTGAAG 3 cut(s) 519, 922, 1133
Eco81I CCTNAGG 1 cut(s) 1173
Eco88I CYCGRG 1 cut(s) 1461
Eco91I GGTNACC 1 cut(s) 1016
EcoICRI GAGCTC 1 cut(s) 1466
EcoO109I RGGNCCY 1 cut(s) 851
EcoO65I GGTNACC 1 cut(s) 1016
EcoRI GAATTC 1 cut(s) 586
EcoRII CCWGG 2 cut(s) 219, 853
EcoRV GATATC 2 cut(s) 1484, 1513
EcoT14I CCWWGG 2 cut(s) 771, 1255
EcoT38I GRGCYC 2 cut(s) 227, 1468
ErhI CCWWGG 2 cut(s) 771, 1255
FalI AAGNNNNNCTT 2 cut(s) 987, 1019
FaqI GGGAC 2 cut(s) 555, 943
FbaI TGATCA 2 cut(s) 192, 1540
Fnu4HI GCNGC 4 cut(s) 45, 600, 1062, 1156
FokI GGATG 2 cut(s) 1340, 1415
FriOI GRGCYC 2 cut(s) 227, 1468
Fsp4HI GCNGC 4 cut(s) 45, 600, 1062, 1156
FspBI CTAG 5 cut(s) 576, 872, 1107, 1164, 1470
GluI GCNGC 4 cut(s) 45, 600, 1062, 1156
GsaI CCCAGC 1 cut(s) 41
HaeIII GGCC 1 cut(s) 1317
HapII CCGG 3 cut(s) 1089, 1138, 1325
HgaI GACGC 1 cut(s) 266
Hin1I GRCGYC 1 cut(s) 258
HincII GTYRAC 1 cut(s) 1095
HindII GTYRAC 1 cut(s) 1095
HinfI GANTC 3 cut(s) 58, 1184, 1505
HpaII CCGG 3 cut(s) 1089, 1138, 1325
HphI GGTGA 5 cut(s) 485, 932, 1028, 1515, 1569
Hpy166II GTNNAC 4 cut(s) 748, 907, 1095, 1234
Hpy188I TCNGA 9 cut(s) 133, 229, 246, 538, 570, 610, 1113, 1510, 1549
Hpy8I GTNNAC 4 cut(s) 748, 907, 1095, 1234
Hpy99I CGWCG 1 cut(s) 1224
HpyAV CCTTC 5 cut(s) 403, 477, 694, 827, 1240
HpyCH4III ACNGT 6 cut(s) 553, 752, 757, 904, 970, 1271
HpyF3I CTNAG 4 cut(s) 108, 847, 956, 1173
Hsp92I GRCGYC 1 cut(s) 258
Kpn2I TCCGGA 1 cut(s) 1324
Ksp22I TGATCA 2 cut(s) 192, 1540
LguI GCTCTTC 1 cut(s) 1209
LmnI GCTCC 1 cut(s) 1471
Lsp1109I GCAGC 4 cut(s) 31, 586, 1073, 1167
LweI GCATC 4 cut(s) 124, 696, 873, 1393
MabI ACCWGGT 1 cut(s) 853
MaeI CTAG 5 cut(s) 576, 872, 1107, 1164, 1470
MaeIII GTNAC 5 cut(s) 473, 547, 1016, 1429, 1488
MboII GAAGA 8 cut(s) 19, 350, 356, 383, 440, 1010, 1226, 1379
MfeI CAATTG 1 cut(s) 1046
MflI RGATCY 2 cut(s) 430, 1418
MhlI GDGCHC 3 cut(s) 227, 1351, 1468
MmeI TCCRAC 2 cut(s) 408, 1423
MroI TCCGGA 1 cut(s) 1324
MroXI GAANNNNTTC 1 cut(s) 1148
MseI TTAA 7 cut(s) 369, 404, 489, 945, 1055, 1206, 1301
MslI CAYNNNNRTG 1 cut(s) 1497
MspCI CTTAAG 1 cut(s) 488
MspI CCGG 3 cut(s) 1089, 1138, 1325
MspR9I CCNGG 4 cut(s) 221, 855, 1090, 1138
MunI CAATTG 1 cut(s) 1046
Mva1269I GAATGC 1 cut(s) 523
MvaI CCWGG 2 cut(s) 221, 855
MvnI CGCG 1 cut(s) 361
NciI CCSGG 2 cut(s) 1090, 1138
NlaIV GGNNCC 1 cut(s) 432
NmuCI GTSAC 3 cut(s) 473, 1016, 1429
NruI TCGCGA 1 cut(s) 361
NspI RCATGY 3 cut(s) 467, 548, 936
NspV TTCGAA 1 cut(s) 1371
PaeR7I CTCGAG 1 cut(s) 1461
PagI TCATGA 5 cut(s) 436, 582, 1242, 1537, 1588
PasI CCCWGGG 1 cut(s) 220
PciI ACATGT 2 cut(s) 463, 544
PciSI GCTCTTC 1 cut(s) 1209
PctI GAATGC 1 cut(s) 523
PdmI GAANNNNTTC 1 cut(s) 1148
PfeI GAWTC 3 cut(s) 58, 1184, 1505
PflMI CCANNNNNTGG 1 cut(s) 1397
PkrI GCNGC 4 cut(s) 46, 601, 1063, 1157
PpuMI RGGWCCY 1 cut(s) 851
PscI ACATGT 2 cut(s) 463, 544
PshBI ATTAAT 2 cut(s) 1055, 1301
Psp124BI GAGCTC 1 cut(s) 1468
Psp5II RGGWCCY 1 cut(s) 851
Psp6I CCWGG 2 cut(s) 219, 853
PspEI GGTNACC 1 cut(s) 1016
PspFI CCCAGC 1 cut(s) 37
PspGI CCWGG 2 cut(s) 219, 853
PspN4I GGNNCC 1 cut(s) 432
PspPI GGNCC 2 cut(s) 851, 1267
PspPPI RGGWCCY 1 cut(s) 851
PstI CTGCAG 1 cut(s) 1426
PsuI RGATCY 2 cut(s) 430, 1418
RruI TCGCGA 1 cut(s) 361
RsaI GTAC 8 cut(s) 265, 333, 754, 841, 876, 1197, 1233, 1360
RsaNI GTAC 8 cut(s) 264, 332, 753, 840, 875, 1196, 1232, 1359
RseI CAYNNNNRTG 1 cut(s) 1497
SacI GAGCTC 1 cut(s) 1468
SapI GCTCTTC 1 cut(s) 1209
SaqAI TTAA 7 cut(s) 369, 404, 489, 945, 1055, 1206, 1301
SatI GCNGC 4 cut(s) 45, 600, 1062, 1156
Sau96I GGNCC 2 cut(s) 851, 1267
ScrFI CCNGG 4 cut(s) 221, 855, 1090, 1138
SduI GDGCHC 3 cut(s) 227, 1351, 1468
SexAI ACCWGGT 1 cut(s) 853
SfaNI GCATC 4 cut(s) 124, 696, 873, 1393
SfcI CTRYAG 1 cut(s) 1422
Sfr274I CTCGAG 1 cut(s) 1461
SfuI TTCGAA 1 cut(s) 1371
SinI GGWCC 2 cut(s) 851, 1267
SlaI CTCGAG 1 cut(s) 1461
SmiMI CAYNNNNRTG 1 cut(s) 1497
SmlI CTYRAG 3 cut(s) 488, 1309, 1461
SmoI CTYRAG 3 cut(s) 488, 1309, 1461
SsiI CCGC 3 cut(s) 1153, 1286, 1604
SspMI CTAG 5 cut(s) 576, 872, 1107, 1164, 1470
SstI GAGCTC 1 cut(s) 1468
StyD4I CCNGG 4 cut(s) 219, 853, 1088, 1136
StyI CCWWGG 2 cut(s) 771, 1255
TaaI ACNGT 6 cut(s) 553, 752, 757, 904, 970, 1271
TaqI TCGA 3 cut(s) 100, 1371, 1462
TatI WGTACW 3 cut(s) 263, 1195, 1231
TfiI GAWTC 3 cut(s) 58, 1184, 1505
Tru1I TTAA 7 cut(s) 369, 404, 489, 945, 1055, 1206, 1301
Tru9I TTAA 7 cut(s) 369, 404, 489, 945, 1055, 1206, 1301
TscAI CASTG 3 cut(s) 601, 702, 762
TseFI GTSAC 3 cut(s) 473, 1016, 1429
TseI GCWGC 4 cut(s) 44, 599, 1061, 1155
Tsp45I GTSAC 3 cut(s) 473, 1016, 1429
TspDTI ATGAA 9 cut(s) 137, 225, 571, 599, 1227, 1231, 1259, 1343, 1518
TspGWI ACGGA 2 cut(s) 903, 1237
TspRI CASTG 3 cut(s) 601, 702, 762
Van91I CCANNNNNTGG 1 cut(s) 1397
Vha464I CTTAAG 1 cut(s) 488
VpaK11BI GGWCC 2 cut(s) 851, 1267
VspI ATTAAT 2 cut(s) 1055, 1301
XapI RAATTY 4 cut(s) 527, 586, 721, 731
XceI RCATGY 3 cut(s) 467, 548, 936
XhoI CTCGAG 1 cut(s) 1461
XmnI GAANNNNTTC 1 cut(s) 1148
XspI CTAG 5 cut(s) 576, 872, 1107, 1164, 1470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.