Rw6G000850

Histidine kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
1302892 .. 1305635
2744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G000850.1

Sequence Viewer

Length: 1599 bp
ATGGGAATTCGATCATTCTACATCACTGAATATGATGATGAGGAAGATGGTGATGAGCCTAGAGCTCCTCCTTACGAGGCTAGAAAGACTCAGAAGGTGGCACTGACAGATATAGTAGCAGAAACCATTAAGGTTCTAGAAGACCCAATAAAGCTCCCCTTAGTGACACTGCAAATGCGGCGTGTTTTCTTTGTCTTGTTGGTTTATGTACTAGCTTTTTTGGAGATTGAGTTAATAAACCTTGTTCACAAGGATTGCAGACTGGCGATTGTCCTCCTGATTGTGATGATTGTCATTATGGCTGTCTTCCTCTTGATTTATTTTTTCCTAATGCTGGGTGCTGCCAAACGGGAGATTCAACTTTGCACCAAACTCATAAGACAGAATGAGGCAACTCGACAAGCTGAGACAAAGAGTATGAACAAATCTGATGCAATTACAAGTGCAAGCCATGATGTTCGTAATGCTCTTGCTTGCATGACTGAATTGATCAAAATATCCTTTGATGAAGTTGCCCAGGGCTCTGAAATAAGGGAATATCTGACACAAATGGACGCATGTACAAAAGACCTCTTAGGTATGTTGAACTCTATTCTTGATAAAAGCAAAATTGAAGTGGGTAAGATGGTACTTGAAGACGAAGAGTTTGACATATCGCGACTTGTTAAGGAGGTAGTTGATTTCCTTCTTCCATCGGGTTTAAAGAAGGGGATAGATGTGGTGTTGGATCCTCATGATTGCTCTCTTCTAAAGTTTGCACATGTGAAAGGTGACAAGGGAAGGCTTAAACAGATATTATGCAACTTATTAGGGAATGCTGTCAAATTTACTTCAGAGGGACATGTAACAGTTCGTGCTTGGGTTCAGAAACCTAGTTTCATGAATTCAATCACTGCTGCTAATTCTGATTTGAATTATAGTTTCTTGAAGCATTTGTTTTGTTTTTTGAACTACAAGAACATCACCAAAGAACAATTAGATGGCATCAAAGCAGTGAAGGGGGTTCAAAATGATCCAAATTTTTTGGAATTTGTTTTTGAGGTGGATGGTACAGGGAGGGGAATTCCCAAGAAGAAGCAAAAAGAAGTGTTTGAAAACCATGTTCAAGTCAAAGAAAAAGCTCATGGAGAAGGAGGAACTGGCTTAGGACCTGGTACGCTTGATGCACGGAGAAATAGGAACTGTGTGGACAAGGAGATTGGTGAAAAAGGGACATGCTTCAGGTTTAATGTTCTCCTGAGAGCTATTACTGTGTGTGAGGATCATATAAAATTACAACAAGACCTTGAATTGGGAGGTGACCCTAATAACGATGACAGAGATCAACAATTGGGATTAATAGCAGCTATACGCACACCAAATGCAAACTCCGGGTTGACCATAGTTCCTAGTCTGAAGCTCACACCACTTGGAAGCCCCTGGTTGAATGTATTCCGCAGCACTCCTAGTAGTCCTAAGGTAGAGGAATCCATTGTTGTACTGCTGATTAAAAATGAAGAGCGACGGAGAATAGTACACCAGTTCATGAAGGGTAGCCTTGGGATAAAGGTATTAGTGGTAGAACAGTGGGGACAACTAGCTCATTCTCTCAAGAAATAA

Protein Analysis

532

Amino Acids

59.78

Weight (kDa)

7.15

Isoelectric Point (pI)

33.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 658
AciI CCGC 2 cut(s) 178, 1435
AclWI GGATC 4 cut(s) 722, 735, 1007, 1269
AcsI RAATTY 6 cut(s) 6, 824, 883, 1018, 1028, 1062
AcuI CTGAAG 3 cut(s) 816, 1204, 1415
AfaI GTAC 7 cut(s) 210, 562, 630, 1051, 1156, 1479, 1515
AfiI CCNNNNNNNGG 2 cut(s) 334, 1291
AflIII ACRYGT 2 cut(s) 760, 841
AjnI CCWGG 3 cut(s) 516, 1150, 1418
AluBI AGCT 9 cut(s) 65, 154, 215, 404, 1121, 1244, 1346, 1399, 1580
AluI AGCT 9 cut(s) 65, 154, 215, 404, 1121, 1244, 1346, 1399, 1580
Alw21I GWGCWC 1 cut(s) 67
Alw26I GTCTC 1 cut(s) 401
AlwI GGATC 4 cut(s) 722, 735, 1007, 1269
ApeKI GCWGC 4 cut(s) 341, 896, 1343, 1437
ApoI RAATTY 6 cut(s) 6, 824, 883, 1018, 1028, 1062
ArsI GACNNNNNNTTYG 2 cut(s) 629, 661
AseI ATTAAT 1 cut(s) 1337
Asp700I GAANNNNTTC 1 cut(s) 1430
AspS9I GGNCC 1 cut(s) 1148
AsuC2I CCSGG 1 cut(s) 1372
AsuHPI GGTGA 5 cut(s) 62, 782, 955, 1214, 1310
AvaII GGWCC 1 cut(s) 1148
AxyI CCTNAGG 1 cut(s) 1455
BamHI GGATCC 1 cut(s) 727
BanII GRGCYC 2 cut(s) 67, 524
BbsI GAAGAC 3 cut(s) 147, 298, 642
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 4 cut(s) 328, 883, 1355, 1449
BccI CCATC 5 cut(s) 41, 619, 700, 974, 1040
BciT130I CCWGG 3 cut(s) 518, 1152, 1420
BclI TGATCA 1 cut(s) 489
BcnI CCSGG 1 cut(s) 1372
BcoDI GTCTC 1 cut(s) 401
BfaI CTAG 8 cut(s) 60, 81, 137, 212, 873, 1389, 1446, 1577
BisI GCNGC 5 cut(s) 179, 342, 897, 1344, 1438
BlsI GCNGC 5 cut(s) 180, 343, 898, 1345, 1439
Bme1390I CCNGG 4 cut(s) 518, 1152, 1372, 1420
Bme18I GGWCC 1 cut(s) 1148
BmgT120I GGNCC 1 cut(s) 1148
BmiI GGNNCC 1 cut(s) 729
BmrFI CCNGG 4 cut(s) 518, 1152, 1372, 1420
BmsI GCATC 3 cut(s) 421, 993, 1153
BpiI GAAGAC 3 cut(s) 147, 298, 642
Bpu10I CCTNAGC 1 cut(s) 1144
BpuEI CTTGAG 1 cut(s) 1574
BpuMI CCSGG 1 cut(s) 1372
BsaJI CCNNGG 4 cut(s) 516, 517, 1418, 1537
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 334, 1291
Bse1I ACTGG 3 cut(s) 267, 1144, 1519
Bse21I CCTNAGG 1 cut(s) 1455
BseBI CCWGG 3 cut(s) 518, 1152, 1420
BseDI CCNNGG 4 cut(s) 516, 517, 1418, 1537
BseGI GGATG 1 cut(s) 1051
BseLI CCNNNNNNNGG 2 cut(s) 334, 1291
BseMII CTCAG 3 cut(s) 104, 396, 1229
BseNI ACTGG 3 cut(s) 267, 1144, 1519
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 4 cut(s) 328, 883, 1355, 1449
BseYI CCCAGC 1 cut(s) 334
Bsh1236I CGCG 1 cut(s) 658
BsiHKAI GWGCWC 1 cut(s) 67
BsiSI CCGG 1 cut(s) 1371
BslFI GGGAC 3 cut(s) 852, 1225, 1584
BslI CCNNNNNNNGG 2 cut(s) 334, 1291
BsmAI GTCTC 1 cut(s) 401
BsmFI GGGAC 3 cut(s) 852, 1225, 1584
BsmI GAATGC 1 cut(s) 820
Bsp1286I GDGCHC 2 cut(s) 67, 524
Bsp1407I TGTACA 1 cut(s) 560
Bsp143I GATC 6 cut(s) 11, 489, 727, 1012, 1261, 1321
Bsp68I TCGCGA 1 cut(s) 658
BspACI CCGC 2 cut(s) 178, 1435
BspCNI CTCAG 3 cut(s) 103, 397, 1230
BspFNI CGCG 1 cut(s) 658
BspHI TCATGA 3 cut(s) 733, 879, 1524
BspLI GGNNCC 1 cut(s) 729
BspPI GGATC 4 cut(s) 722, 735, 1007, 1269
BspQI GCTCTTC 1 cut(s) 1491
BsrGI TGTACA 1 cut(s) 560
BsrI ACTGG 3 cut(s) 267, 1144, 1519
BssECI CCNNGG 4 cut(s) 516, 517, 1418, 1537
BssMI GATC 6 cut(s) 11, 489, 727, 1012, 1261, 1321
BssT1I CCWWGG 1 cut(s) 1537
Bst2UI CCWGG 3 cut(s) 518, 1152, 1420
Bst4CI ACNGT 4 cut(s) 850, 1184, 1252, 1566
Bst6I CTCTTC 3 cut(s) 636, 750, 1491
BstAUI TGTACA 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 448, 475
BstDEI CTNAG 7 cut(s) 90, 160, 405, 574, 1144, 1238, 1455
BstEII GGTNACC 1 cut(s) 1298
BstF5I GGATG 1 cut(s) 1051
BstFNI CGCG 1 cut(s) 658
BstKTI GATC 6 cut(s) 14, 492, 730, 1015, 1264, 1324
BstMAI GTCTC 1 cut(s) 401
BstMBI GATC 6 cut(s) 11, 489, 727, 1012, 1261, 1321
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 3 cut(s) 518, 1152, 1420
BstNSI RCATGY 4 cut(s) 561, 764, 845, 1218
BstPI GGTNACC 1 cut(s) 1298
BstSCI CCNGG 4 cut(s) 516, 1150, 1370, 1418
BstUI CGCG 1 cut(s) 658
BstV1I GCAGC 4 cut(s) 328, 883, 1355, 1449
BstV2I GAAGAC 3 cut(s) 147, 298, 642
BstX2I RGATCY 1 cut(s) 727
BstYI RGATCY 1 cut(s) 727
Bsu36I CCTNAGG 1 cut(s) 1455
BtsCI GGATG 1 cut(s) 1051
BtsI GCAGTG 3 cut(s) 167, 891, 999
BtsIMutI CAGTG 6 cut(s) 24, 101, 167, 891, 999, 1571
BtuMI TCGCGA 1 cut(s) 658
Cac8I GCNNGC 2 cut(s) 448, 475
CciI TCATGA 3 cut(s) 733, 879, 1524
Cfr13I GGNCC 1 cut(s) 1148
CseI GACGC 1 cut(s) 563
CsiI ACCWGGT 1 cut(s) 1150
Csp6I GTAC 7 cut(s) 209, 561, 629, 1050, 1155, 1478, 1514
CviQI GTAC 7 cut(s) 209, 561, 629, 1050, 1155, 1478, 1514
DdeI CTNAG 7 cut(s) 90, 160, 405, 574, 1144, 1238, 1455
DpnI GATC 6 cut(s) 13, 491, 729, 1014, 1263, 1323
DpnII GATC 6 cut(s) 11, 489, 727, 1012, 1261, 1321
DraI TTTAAA 1 cut(s) 702
Eam1104I CTCTTC 3 cut(s) 636, 750, 1491
EarI CTCTTC 3 cut(s) 636, 750, 1491
Ecl136II GAGCTC 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 1537
Eco24I GRGCYC 2 cut(s) 67, 524
Eco47I GGWCC 1 cut(s) 1148
Eco53kI GAGCTC 1 cut(s) 65
Eco57I CTGAAG 3 cut(s) 816, 1204, 1415
Eco81I CCTNAGG 1 cut(s) 1455
Eco91I GGTNACC 1 cut(s) 1298
EcoICRI GAGCTC 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 1148
EcoO65I GGTNACC 1 cut(s) 1298
EcoRI GAATTC 3 cut(s) 6, 883, 1062
EcoRII CCWGG 3 cut(s) 516, 1150, 1418
EcoT14I CCWWGG 1 cut(s) 1537
EcoT38I GRGCYC 2 cut(s) 67, 524
ErhI CCWWGG 1 cut(s) 1537
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 3 cut(s) 852, 1225, 1584
FbaI TGATCA 1 cut(s) 489
Fnu4HI GCNGC 5 cut(s) 179, 342, 897, 1344, 1438
FokI GGATG 1 cut(s) 1058
FriOI GRGCYC 2 cut(s) 67, 524
Fsp4HI GCNGC 5 cut(s) 179, 342, 897, 1344, 1438
FspBI CTAG 8 cut(s) 60, 81, 137, 212, 873, 1389, 1446, 1577
GluI GCNGC 5 cut(s) 179, 342, 897, 1344, 1438
GsaI CCCAGC 1 cut(s) 338
HapII CCGG 1 cut(s) 1371
HgaI GACGC 1 cut(s) 563
HincII GTYRAC 1 cut(s) 1377
HindII GTYRAC 1 cut(s) 1377
HinfI GANTC 3 cut(s) 88, 355, 1466
HpaII CCGG 1 cut(s) 1371
HphI GGTGA 5 cut(s) 62, 782, 955, 1214, 1310
Hpy166II GTNNAC 4 cut(s) 247, 1189, 1377, 1516
Hpy188I TCNGA 8 cut(s) 93, 430, 526, 543, 835, 867, 907, 1395
Hpy8I GTNNAC 4 cut(s) 247, 1189, 1377, 1516
Hpy99I CGWCG 1 cut(s) 1506
HpyAV CCTTC 7 cut(s) 88, 695, 700, 774, 991, 1124, 1522
HpyCH4III ACNGT 4 cut(s) 850, 1184, 1252, 1566
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 7 cut(s) 90, 160, 405, 574, 1144, 1238, 1455
Ksp22I TGATCA 1 cut(s) 489
Kzo9I GATC 6 cut(s) 11, 489, 727, 1012, 1261, 1321
LguI GCTCTTC 1 cut(s) 1491
LmnI GCTCC 2 cut(s) 70, 159
Lsp1109I GCAGC 4 cut(s) 328, 883, 1355, 1449
LweI GCATC 3 cut(s) 421, 993, 1153
MabI ACCWGGT 1 cut(s) 1150
MaeI CTAG 8 cut(s) 60, 81, 137, 212, 873, 1389, 1446, 1577
MaeIII GTNAC 4 cut(s) 163, 770, 844, 1298
MalI GATC 6 cut(s) 13, 491, 729, 1014, 1263, 1323
MboI GATC 6 cut(s) 11, 489, 727, 1012, 1261, 1321
MboII GAAGA 9 cut(s) 56, 152, 298, 647, 653, 680, 737, 1084, 1508
MfeI CAATTG 1 cut(s) 1328
MflI RGATCY 1 cut(s) 727
MhlI GDGCHC 2 cut(s) 67, 524
MlyI GAGTC 1 cut(s) 82
MmeI TCCRAC 1 cut(s) 705
MroXI GAANNNNTTC 1 cut(s) 1430
MseI TTAA 8 cut(s) 129, 233, 666, 701, 786, 1227, 1337, 1488
MspI CCGG 1 cut(s) 1371
MspR9I CCNGG 4 cut(s) 518, 1152, 1372, 1420
MunI CAATTG 1 cut(s) 1328
Mva1269I GAATGC 1 cut(s) 820
MvaI CCWGG 3 cut(s) 518, 1152, 1420
MvnI CGCG 1 cut(s) 658
MwoI GCNNNNNNNGC 1 cut(s) 178
NciI CCSGG 1 cut(s) 1372
NdeII GATC 6 cut(s) 11, 489, 727, 1012, 1261, 1321
NlaIV GGNNCC 1 cut(s) 729
NmuCI GTSAC 3 cut(s) 163, 770, 1298
NruI TCGCGA 1 cut(s) 658
NspI RCATGY 4 cut(s) 561, 764, 845, 1218
PagI TCATGA 3 cut(s) 733, 879, 1524
PasI CCCWGGG 1 cut(s) 517
PciI ACATGT 2 cut(s) 760, 841
PciSI GCTCTTC 1 cut(s) 1491
PctI GAATGC 1 cut(s) 820
PdmI GAANNNNTTC 1 cut(s) 1430
PfeI GAWTC 2 cut(s) 355, 1466
PkrI GCNGC 5 cut(s) 180, 343, 898, 1345, 1439
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PpuMI RGGWCCY 1 cut(s) 1148
PscI ACATGT 2 cut(s) 760, 841
PshBI ATTAAT 1 cut(s) 1337
Psp124BI GAGCTC 1 cut(s) 67
Psp5II RGGWCCY 1 cut(s) 1148
Psp6I CCWGG 3 cut(s) 516, 1150, 1418
PspEI GGTNACC 1 cut(s) 1298
PspFI CCCAGC 1 cut(s) 334
PspGI CCWGG 3 cut(s) 516, 1150, 1418
PspN4I GGNNCC 1 cut(s) 729
PspPI GGNCC 1 cut(s) 1148
PspPPI RGGWCCY 1 cut(s) 1148
PsuI RGATCY 1 cut(s) 727
RruI TCGCGA 1 cut(s) 658
RsaI GTAC 7 cut(s) 210, 562, 630, 1051, 1156, 1479, 1515
RsaNI GTAC 7 cut(s) 209, 561, 629, 1050, 1155, 1478, 1514
SacI GAGCTC 1 cut(s) 67
SapI GCTCTTC 1 cut(s) 1491
SaqAI TTAA 8 cut(s) 129, 233, 666, 701, 786, 1227, 1337, 1488
SatI GCNGC 5 cut(s) 179, 342, 897, 1344, 1438
Sau3AI GATC 6 cut(s) 11, 489, 727, 1012, 1261, 1321
Sau96I GGNCC 1 cut(s) 1148
SchI GAGTC 1 cut(s) 82
ScrFI CCNGG 4 cut(s) 518, 1152, 1372, 1420
SduI GDGCHC 2 cut(s) 67, 524
SexAI ACCWGGT 1 cut(s) 1150
SfaNI GCATC 3 cut(s) 421, 993, 1153
SinI GGWCC 1 cut(s) 1148
SmlI CTYRAG 1 cut(s) 1589
SmoI CTYRAG 1 cut(s) 1589
SsiI CCGC 2 cut(s) 178, 1435
SspMI CTAG 8 cut(s) 60, 81, 137, 212, 873, 1389, 1446, 1577
SstI GAGCTC 1 cut(s) 67
StyD4I CCNGG 4 cut(s) 516, 1150, 1370, 1418
StyI CCWWGG 1 cut(s) 1537
TaaI ACNGT 4 cut(s) 850, 1184, 1252, 1566
TaqI TCGA 2 cut(s) 10, 397
TatI WGTACW 4 cut(s) 208, 560, 1477, 1513
TauI GCSGC 1 cut(s) 181
TfiI GAWTC 2 cut(s) 355, 1466
Tru1I TTAA 8 cut(s) 129, 233, 666, 701, 786, 1227, 1337, 1488
Tru9I TTAA 8 cut(s) 129, 233, 666, 701, 786, 1227, 1337, 1488
TscAI CASTG 6 cut(s) 31, 108, 174, 898, 999, 1571
TseFI GTSAC 3 cut(s) 163, 770, 1298
TseI GCWGC 4 cut(s) 341, 896, 1343, 1437
Tsp45I GTSAC 3 cut(s) 163, 770, 1298
TspDTI ATGAA 7 cut(s) 434, 522, 868, 896, 1509, 1513, 1541
TspGWI ACGGA 2 cut(s) 1183, 1519
TspRI CASTG 6 cut(s) 31, 108, 174, 898, 999, 1571
VpaK11BI GGWCC 1 cut(s) 1148
VspI ATTAAT 1 cut(s) 1337
XapI RAATTY 6 cut(s) 6, 824, 883, 1018, 1028, 1062
XbaI TCTAGA 1 cut(s) 136
XceI RCATGY 4 cut(s) 561, 764, 845, 1218
XmnI GAANNNNTTC 1 cut(s) 1430
XspI CTAG 8 cut(s) 60, 81, 137, 212, 873, 1389, 1446, 1577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.