MD03G1295900.v1.1

Histidine kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
37162344 .. 37163774
1431 bp
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UTR
Exon/CDS
Intron
MD03G1295900.v1.1.491

Sequence Viewer

Length: 1431 bp
ATGGACGGAGAAATAGGAATTGTGGACAAGGAGATGGGTGAAAGAGGGACATGTTTTAGGTTTAATGTTCTGCTAATTGTACGTGATAATGTCTCCAAGGATAGCACAAAAGAAGTGGACATTGATATGGGATTTGGCCCAAGTACTTCTGATTTGGGGACAGTAGCCACTCACACTCCGAGTACTCCCGGATTGAGCATTCACACGCCAAGCCCCAGCTTGAACATTCAAACCCCATCTAGTACTCCTAAGGTTGATCGATCAGGGTCTTCTGTCGTCTTGTTGATTAAGAATGAAGAGTGTCGCAGAATTTCACAAAAGTTCATGGAAAACCTTGGGATAAAAGTATTTACGGCAAAACAATGGGAGCAACTTTCTCATACTCTAGAGAAAGCAACTAAACACAAGGGGGGCTACCATTCTCGTCATCACAGCTCTTCAGGAATATCCGAGTTGGGTTTGCAAGATTGCTTGAGCAAATCCACATCATGCAAATCTACCAACAGAGTAAAGGAGGTGCCTTTGATCAGCGCCATGGACAGAAGTGGAACCAAAAACAATAGCAGCAACAATAACATGCTGCCTCTTTCTCTCTTTAAGAAGATGAGTCTTCGGGGTGCAATGAGCTTTGTATTAGTAGTGATCGATGCCACAGCTGCACCCTTTTCAAAACTATGTAAGATTGTGACTGAATTCAAAATGGATCATCACCAGAATAGTTATAGGAATGGTAATTGGTGCAGGGTTGTTTGGTTAGCAAGTCATAGCATCAGCTTGAATGATCATGATATGTTTGATCCAGATGACGTAATCAAACACAAGGCGCTTCACGGTAGCTGTCTATACGAAGTGGTAAGACTTCTTCCAGAGTTTGGAGGTGCATTACCCAAGAGAAGGGCCACATTTCAGCAGCTTCCACACCAGGATGGAAAAGCGTTCAGAGCTCTTGCTAGTTCCTCAATATCACATCATCATCGGTCGTATAATAATCAGTTAAATCATTCAACCGACGATGAAGTTGAAGTATTGCAAGACCATAGTAATACTGGTGGTTGTTCAGGTAATGAGACACCTCGCAAGAAAACGAATTCACCAACGCTGACTCAACAATATCTGTCTCGTGTTGGCTCCGCCACATCAAGAAACTCACAAATTCCAGGTCCTCCTAGTGATCAAACACAAGAACATGCCATCGATCCGAACAGGCCCTTGATTGGAAAGAAAATTTTGGTTGCTGATGACATTGAATTGAACCGCAAGCTAGCTCATATTAATTTGACAAGGTTGGGTGCAACTGTGGAGCTTTGTGGAAATGGAAGAGAAGTCGTTGTCCTCGTTCGCGGTGCTCTAGCTAATCAAGGAAAACATGGATTCGATTATATACTAATGGATTATGAGGTAATTATTTCACTCCTCATGGTTGATCAATAA

Protein Analysis

477

Amino Acids

52.54

Weight (kDa)

8.61

Isoelectric Point (pI)

36.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 517
AccB7I CCANNNNNTGG 1 cut(s) 872
AccII CGCG 1 cut(s) 1341
AciI CCGC 3 cut(s) 1131, 1255, 1341
AclWI GGATC 3 cut(s) 711, 791, 1190
AcsI RAATTY 5 cut(s) 309, 692, 1087, 1152, 1224
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 4 cut(s) 81, 145, 184, 244
AfiI CCNNNNNNNGG 3 cut(s) 872, 894, 1214
AflIII ACRYGT 1 cut(s) 50
AgsI TTSAA 9 cut(s) 223, 230, 669, 697, 778, 1005, 1022, 1247, 1252
AjnI CCWGG 2 cut(s) 921, 1156
Alw21I GWGCWC 2 cut(s) 946, 1348
Alw26I GTCTC 3 cut(s) 97, 1061, 1122
AlwI GGATC 3 cut(s) 711, 791, 1190
AoxI GGCC 3 cut(s) 136, 897, 1205
ApeKI GCWGC 4 cut(s) 564, 580, 656, 910
ApoI RAATTY 5 cut(s) 309, 692, 1087, 1152, 1224
ArsI GACNNNNNNTTYG 2 cut(s) 1144, 1176
AseI ATTAAT 1 cut(s) 1272
AspLEI GCGC 2 cut(s) 533, 826
AspS9I GGNCC 4 cut(s) 137, 897, 1160, 1206
AsuC2I CCSGG 1 cut(s) 189
AsuHPI GGTGA 3 cut(s) 50, 701, 1083
AsuNHI GCTAGC 1 cut(s) 1261
AvaII GGWCC 1 cut(s) 1160
AxyI CCTNAGG 1 cut(s) 249
BanI GGYRCC 1 cut(s) 517
BanII GRGCYC 1 cut(s) 946
BarI GAAGNNNNNNTAC 2 cut(s) 846, 878
BauI CACGAG 1 cut(s) 1119
BbsI GAAGAC 2 cut(s) 261, 602
Bbv12I GWGCWC 2 cut(s) 946, 1348
BbvI GCAGC 4 cut(s) 567, 576, 643, 922
BccI CCATC 4 cut(s) 28, 244, 920, 1199
BceAI ACGGC 1 cut(s) 369
BciT130I CCWGG 2 cut(s) 923, 1158
BclI TGATCA 4 cut(s) 525, 781, 1171, 1423
BcnI CCSGG 1 cut(s) 189
BcoDI GTCTC 3 cut(s) 97, 1061, 1122
BfaI CTAG 6 cut(s) 240, 386, 951, 1167, 1262, 1349
BfoI RGCGCY 2 cut(s) 534, 827
BisI GCNGC 4 cut(s) 565, 581, 657, 911
BlsI GCNGC 4 cut(s) 566, 582, 658, 912
BmcAI AGTACT 3 cut(s) 145, 184, 244
Bme1390I CCNGG 3 cut(s) 189, 923, 1158
Bme18I GGWCC 1 cut(s) 1160
BmgT120I GGNCC 4 cut(s) 137, 897, 1160, 1206
BmiI GGNNCC 3 cut(s) 519, 550, 1129
BmrFI CCNGG 3 cut(s) 189, 923, 1158
BmsI GCATC 2 cut(s) 637, 777
BmtI GCTAGC 1 cut(s) 1265
BpiI GAAGAC 2 cut(s) 261, 602
BpuEI CTTGAG 1 cut(s) 493
BpuMI CCSGG 1 cut(s) 189
Bsa29I ATCGAT 3 cut(s) 259, 645, 1194
BsaAI YACGTR 1 cut(s) 83
BsaJI CCNNGG 3 cut(s) 96, 334, 534
BsaXI ACNNNNNCTCC 2 cut(s) 160, 190
Bsc4I CCNNNNNNNGG 3 cut(s) 872, 894, 1214
Bse1I ACTGG 1 cut(s) 1051
Bse21I CCTNAGG 1 cut(s) 249
Bse3DI GCAATG 1 cut(s) 627
BseBI CCWGG 2 cut(s) 923, 1158
BseCI ATCGAT 3 cut(s) 259, 645, 1194
BseDI CCNNGG 3 cut(s) 96, 334, 534
BseGI GGATG 1 cut(s) 931
BseLI CCNNNNNNNGG 3 cut(s) 872, 894, 1214
BseMI GCAATG 1 cut(s) 627
BseNI ACTGG 1 cut(s) 1051
BseRI GAGGAG 1 cut(s) 1403
BseXI GCAGC 4 cut(s) 567, 576, 643, 922
BseYI CCCAGC 1 cut(s) 215
BsgI GTGCAG 2 cut(s) 642, 760
Bsh1236I CGCG 1 cut(s) 1341
Bsh1285I CGRYCG 1 cut(s) 980
BshFI GGCC 3 cut(s) 138, 899, 1207
BshNI GGYRCC 1 cut(s) 517
BshVI ATCGAT 3 cut(s) 259, 645, 1194
BsiEI CGRYCG 1 cut(s) 980
BsiHKAI GWGCWC 2 cut(s) 946, 1348
BsiSI CCGG 1 cut(s) 189
BslFI GGGAC 2 cut(s) 61, 172
BslI CCNNNNNNNGG 3 cut(s) 872, 894, 1214
BsmAI GTCTC 3 cut(s) 97, 1061, 1122
BsmFI GGGAC 2 cut(s) 61, 172
BsmI GAATGC 1 cut(s) 198
BsnI GGCC 3 cut(s) 138, 899, 1207
Bsp1286I GDGCHC 2 cut(s) 946, 1348
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 3 cut(s) 1131, 1255, 1341
BspANI GGCC 3 cut(s) 138, 899, 1207
BspDI ATCGAT 3 cut(s) 259, 645, 1194
BspFNI CGCG 1 cut(s) 1341
BspHI TCATGA 1 cut(s) 784
BspLI GGNNCC 3 cut(s) 519, 550, 1129
BspOI GCTAGC 1 cut(s) 1265
BspPI GGATC 3 cut(s) 711, 791, 1190
BspQI GCTCTTC 1 cut(s) 442
BspT107I GGYRCC 1 cut(s) 517
BsrDI GCAATG 1 cut(s) 627
BsrI ACTGG 1 cut(s) 1051
BssECI CCNNGG 3 cut(s) 96, 334, 534
BssSI CACGAG 1 cut(s) 1119
BssT1I CCWWGG 3 cut(s) 96, 334, 534
Bst2BI CACGAG 1 cut(s) 1119
Bst2UI CCWGG 2 cut(s) 923, 1158
Bst4CI ACNGT 3 cut(s) 163, 833, 1297
Bst6I CTCTTC 3 cut(s) 291, 442, 1312
BstBAI YACGTR 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 1259, 1263
BstDEI CTNAG 1 cut(s) 249
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 1 cut(s) 931
BstFNI CGCG 1 cut(s) 1341
BstH2I RGCGCY 2 cut(s) 534, 827
BstHHI GCGC 2 cut(s) 533, 826
BstMAI GTCTC 3 cut(s) 97, 1061, 1122
BstMCI CGRYCG 1 cut(s) 980
BstMWI GCNNNNNNNGC 2 cut(s) 656, 941
BstNI CCWGG 2 cut(s) 923, 1158
BstNSI RCATGY 3 cut(s) 54, 580, 1190
BstSCI CCNGG 3 cut(s) 187, 921, 1156
BstUI CGCG 1 cut(s) 1341
BstV1I GCAGC 4 cut(s) 567, 576, 643, 922
BstV2I GAAGAC 2 cut(s) 261, 602
Bsu15I ATCGAT 3 cut(s) 259, 645, 1194
Bsu36I CCTNAGG 1 cut(s) 249
BsuRI GGCC 3 cut(s) 138, 899, 1207
BsuTUI ATCGAT 3 cut(s) 259, 645, 1194
BtgI CCRYGG 1 cut(s) 534
BtsCI GGATG 1 cut(s) 931
Cac8I GCNNGC 2 cut(s) 1259, 1263
CciI TCATGA 1 cut(s) 784
CfoI GCGC 2 cut(s) 533, 826
Cfr13I GGNCC 4 cut(s) 137, 897, 1160, 1206
ClaI ATCGAT 3 cut(s) 259, 645, 1194
Csp6I GTAC 4 cut(s) 80, 144, 183, 243
CspCI CAANNNNNGTGG 2 cut(s) 96, 131
CviAII CATG 9 cut(s) 51, 325, 489, 535, 577, 785, 1187, 1367, 1417
CviQI GTAC 4 cut(s) 80, 144, 183, 243
DdeI CTNAG 1 cut(s) 249
Eam1104I CTCTTC 3 cut(s) 291, 442, 1312
EarI CTCTTC 3 cut(s) 291, 442, 1312
EciI GGCGGA 1 cut(s) 1120
Ecl136II GAGCTC 1 cut(s) 944
Eco130I CCWWGG 3 cut(s) 96, 334, 534
Eco24I GRGCYC 1 cut(s) 946
Eco47I GGWCC 1 cut(s) 1160
Eco53kI GAGCTC 1 cut(s) 944
Eco57I CTGAAG 1 cut(s) 423
Eco81I CCTNAGG 1 cut(s) 249
EcoICRI GAGCTC 1 cut(s) 944
EcoO109I RGGNCCY 2 cut(s) 1160, 1206
EcoRI GAATTC 2 cut(s) 692, 1087
EcoRII CCWGG 2 cut(s) 921, 1156
EcoT14I CCWWGG 3 cut(s) 96, 334, 534
EcoT38I GRGCYC 1 cut(s) 946
ErhI CCWWGG 3 cut(s) 96, 334, 534
FaeI CATG 9 cut(s) 54, 328, 492, 538, 580, 788, 1190, 1370, 1420
FaqI GGGAC 2 cut(s) 61, 172
FatI CATG 9 cut(s) 50, 324, 488, 534, 576, 784, 1186, 1366, 1416
FbaI TGATCA 4 cut(s) 525, 781, 1171, 1423
Fnu4HI GCNGC 4 cut(s) 565, 581, 657, 911
FokI GGATG 1 cut(s) 938
FriOI GRGCYC 1 cut(s) 946
Fsp4HI GCNGC 4 cut(s) 565, 581, 657, 911
FspBI CTAG 6 cut(s) 240, 386, 951, 1167, 1262, 1349
GlaI GCGC 2 cut(s) 532, 825
GluI GCNGC 4 cut(s) 565, 581, 657, 911
GsaI CCCAGC 1 cut(s) 219
HaeII RGCGCY 2 cut(s) 534, 827
HaeIII GGCC 3 cut(s) 138, 899, 1207
HapII CCGG 1 cut(s) 189
HhaI GCGC 2 cut(s) 533, 826
Hin1II CATG 9 cut(s) 54, 328, 492, 538, 580, 788, 1190, 1370, 1420
Hin6I GCGC 2 cut(s) 531, 824
HinP1I GCGC 2 cut(s) 531, 824
HinfI GANTC 3 cut(s) 607, 1102, 1371
HpaII CCGG 1 cut(s) 189
HphI GGTGA 3 cut(s) 50, 701, 1083
Hpy166II GTNNAC 2 cut(s) 25, 118
Hpy188I TCNGA 5 cut(s) 151, 180, 451, 941, 1200
Hpy188III TCNNGA 6 cut(s) 386, 441, 785, 800, 866, 1140
Hpy8I GTNNAC 2 cut(s) 25, 118
Hpy99I CGWCG 1 cut(s) 1013
HpyAV CCTTC 1 cut(s) 888
HpyCH4III ACNGT 3 cut(s) 163, 833, 1297
HpyCH4IV ACGT 2 cut(s) 82, 807
HpyCH4V TGCA 8 cut(s) 463, 492, 620, 659, 741, 881, 1030, 1292
HpyF10VI GCNNNNNNNGC 2 cut(s) 656, 941
HpyF3I CTNAG 1 cut(s) 249
HpySE526I ACGT 2 cut(s) 82, 807
Hsp92II CATG 9 cut(s) 54, 328, 492, 538, 580, 788, 1190, 1370, 1420
HspAI GCGC 2 cut(s) 531, 824
Ksp22I TGATCA 4 cut(s) 525, 781, 1171, 1423
LguI GCTCTTC 1 cut(s) 442
LmnI GCTCC 3 cut(s) 367, 1133, 1300
Lsp1109I GCAGC 4 cut(s) 567, 576, 643, 922
LweI GCATC 2 cut(s) 637, 777
MaeI CTAG 6 cut(s) 240, 386, 951, 1167, 1262, 1349
MaeII ACGT 2 cut(s) 82, 807
MaeIII GTNAC 1 cut(s) 685
MboII GAAGA 7 cut(s) 261, 308, 429, 602, 613, 854, 1329
MhlI GDGCHC 2 cut(s) 946, 1348
MlyI GAGTC 2 cut(s) 616, 1096
MseI TTAA 5 cut(s) 63, 288, 597, 995, 1272
MslI CAYNNNNRTG 2 cut(s) 125, 924
MspA1I CMGCKG 1 cut(s) 656
MspI CCGG 1 cut(s) 189
MspR9I CCNGG 3 cut(s) 189, 923, 1158
Mva1269I GAATGC 1 cut(s) 198
MvaI CCWGG 2 cut(s) 923, 1158
MvnI CGCG 1 cut(s) 1341
MwoI GCNNNNNNNGC 2 cut(s) 656, 941
NciI CCSGG 1 cut(s) 189
NcoI CCATGG 1 cut(s) 534
NheI GCTAGC 1 cut(s) 1261
NlaIII CATG 9 cut(s) 54, 328, 492, 538, 580, 788, 1190, 1370, 1420
NlaIV GGNNCC 3 cut(s) 519, 550, 1129
NmuCI GTSAC 1 cut(s) 685
NspI RCATGY 3 cut(s) 54, 580, 1190
PagI TCATGA 1 cut(s) 784
PciI ACATGT 1 cut(s) 50
PciSI GCTCTTC 1 cut(s) 442
PcsI WCGNNNNNNNCGW 1 cut(s) 1332
PctI GAATGC 1 cut(s) 198
PfeI GAWTC 1 cut(s) 1371
PflMI CCANNNNNTGG 1 cut(s) 872
PfoI TCCNGGA 1 cut(s) 187
PkrI GCNGC 4 cut(s) 566, 582, 658, 912
PleI GAGTC 2 cut(s) 615, 1096
PpsI GAGTC 2 cut(s) 615, 1096
Ppu21I YACGTR 1 cut(s) 83
PpuMI RGGWCCY 1 cut(s) 1160
PscI ACATGT 1 cut(s) 50
PshBI ATTAAT 1 cut(s) 1272
Psp124BI GAGCTC 1 cut(s) 946
Psp5II RGGWCCY 1 cut(s) 1160
Psp6I CCWGG 2 cut(s) 921, 1156
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 2 cut(s) 921, 1156
PspN4I GGNNCC 3 cut(s) 519, 550, 1129
PspPI GGNCC 4 cut(s) 137, 897, 1160, 1206
PspPPI RGGWCCY 1 cut(s) 1160
PvuII CAGCTG 1 cut(s) 656
RsaI GTAC 4 cut(s) 81, 145, 184, 244
RsaNI GTAC 4 cut(s) 80, 144, 183, 243
RseI CAYNNNNRTG 2 cut(s) 125, 924
SacI GAGCTC 1 cut(s) 946
SapI GCTCTTC 1 cut(s) 442
SaqAI TTAA 5 cut(s) 63, 288, 597, 995, 1272
SatI GCNGC 4 cut(s) 565, 581, 657, 911
Sau96I GGNCC 4 cut(s) 137, 897, 1160, 1206
ScaI AGTACT 3 cut(s) 145, 184, 244
SchI GAGTC 2 cut(s) 616, 1096
ScrFI CCNGG 3 cut(s) 189, 923, 1158
SduI GDGCHC 2 cut(s) 946, 1348
SfaNI GCATC 2 cut(s) 637, 777
SinI GGWCC 1 cut(s) 1160
SmiMI CAYNNNNRTG 2 cut(s) 125, 924
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
SsiI CCGC 3 cut(s) 1131, 1255, 1341
SspMI CTAG 6 cut(s) 240, 386, 951, 1167, 1262, 1349
SstI GAGCTC 1 cut(s) 946
StyD4I CCNGG 3 cut(s) 187, 921, 1156
StyI CCWWGG 3 cut(s) 96, 334, 534
TaaI ACNGT 3 cut(s) 163, 833, 1297
TaiI ACGT 2 cut(s) 85, 810
TaqI TCGA 4 cut(s) 259, 645, 1194, 1374
TaqII GACCGA 1 cut(s) 966
TatI WGTACW 3 cut(s) 143, 182, 242
TfiI GAWTC 1 cut(s) 1371
Tru1I TTAA 5 cut(s) 63, 288, 597, 995, 1272
Tru9I TTAA 5 cut(s) 63, 288, 597, 995, 1272
TseFI GTSAC 1 cut(s) 685
TseI GCWGC 4 cut(s) 564, 580, 656, 910
Tsp45I GTSAC 1 cut(s) 685
TspDTI ATGAA 3 cut(s) 309, 313, 1029
TspGWI ACGGA 1 cut(s) 21
Van91I CCANNNNNTGG 1 cut(s) 872
VpaK11BI GGWCC 1 cut(s) 1160
VspI ATTAAT 1 cut(s) 1272
XapI RAATTY 5 cut(s) 309, 692, 1087, 1152, 1224
XbaI TCTAGA 1 cut(s) 385
XceI RCATGY 3 cut(s) 54, 580, 1190
XcmI CCANNNNNNNNNTGG 1 cut(s) 1043
XspI CTAG 6 cut(s) 240, 386, 951, 1167, 1262, 1349
ZrmI AGTACT 3 cut(s) 145, 184, 244
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.