Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Reverse (-)

67609793 .. 67612186

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015535

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGATTGTCATTATGGCTGTCTTCCTCTTTAGTTATTTTTTCCTAATGCTGGCTGCTGCCAAACGAGAGATTCAACTTTGTACCAAACTCATAAAACAAGATGAGGCAATTCGACAAGCTGAGACAAAGAGTATGAAAAAATCTGATGCAATTACAAGTGCAAGCCATGATGTTCGTAATGCTCTTGCTTGCATGACTGAATTGATCAAGATATCCTGCAATGAAGTTTCCCAGGGCTCCGAAATAAAGAAATATCTAACACAAATGGATGCATGTACTAAACACCTCTTAGGTATTTTGAACTCTATTCTTGATAAAAGCAAAATTGAAGCGGGTAAGATGGTTCTTGAAGATGAGGAATTTGACATCTTCCAACTTGTTGAAGAGGTAATCGATTTCTTTCTTCCATCGGGTTTAAAGAAGGGCGTAGATGTGGTGTTGGATCCTTATGATTGCTCTCTCCTAAAGTTTGCACACGTGAGCGGTGATAGGAGAAGGCTTAAGCAAATATTATGCAACTTATTAGGGAATGCTGTCAAATTTACTTCAGAGGGACATGTCACAGTTCGTGCTTGGGTTCAGAAACCTAGTTTCATGAATTCAATCACTGCGCATGCTGATTCTGATCAGAATAATGGTTTCTTGAAGCATTTGTTGTGTTTTTTGAACGGCAAGAACATGACCAAAGAACAGTCAGATGGCATAAAAGCAGTGATTGGTGTTCAACATGATCCAAATTATTTGGAATTTGTTTTTGAGGTGAATGATTCAGGGAGGGGAATTCCCAAGGAGAAGCAAAAAGAAGTGTTTGAAAACTATGTCCAAGTCAAAGAAAAAGCTCATGGAGAAGGAGGTACTGGCTTAGGACTTGGTATTGTCCAGTCTCTGGTACGCTTGATGCATGGAGAAATAGGAATTGTGGACAAAGAGATTGGTGAAAAAGGGACATGCTTCAGGTTTAATGTTCTCTTGAGAGCTATTAATGTGTATGAGGATCATATAAAATTACAACAAGACCTTGAATTGGGAGGTGACCCTAGTTGTGATGACAAAGATCAACAATTGGGATTAATAGCAAATGCAAACCCCAGGTCGACCATAATTCCTAGTCCAAATAATTTCACACCAATTGGAAGTCCTAGGTTGAATGTATTCCGCATCACCCCTACTAGTCCTAAGGTGGAGGAATCCATTGTTGTACTACTGATTAAAAATGAAGAGCGGCGGAGGGTAGTATACCAGTTCATGAAGAGCTGCCTTGGGATAAAGGTATCAGTGGTAGAACAATGGGGACAGCTAGCTCATACTCTCAAGAAAATAAAACACATGAAGATGAAGGGTCATCCTAGTCCGTCTTCAGGAATATCTGAATTGGGTCTGCATGACAGCTTGAGCAAATCTACATCATGCGACTCCGGTAATAGAGCAAAGGAGGTGCACCCTTTAATGAGTGCTATGGATGAAACGTACAACAATATGTGCTCTCTATTTAAGAAGACGACTACCAATGTTAGTGGTGCATCTGCCTTTTTATTGCTAGTGATAGATACTACAGCTGGACCATATCTGCAATTATGTAAGATTATAACTGAGTTCAAAAGAGGCCTTCAAAATGCTTGGTGCAGGACCGTTTGGTTAGAAAATCCGCAGTCTCATAAAATAATGGATTTGAGTGGCCTTGATCCGGATGATGTCATCATAAAAGGGGCACTTCATGGTACTCGTCTTTTTGAAGTGGTAAGATTTCTTCCAGAGTATGGGGGTGCACTACCAAATAGATCAGCAGGGGACACATTTCAGGTTGGATCAAAAGTAGTCTCTCGAGCTCCTAGTTCATCAAGATATCGCTTGCATACTGATGATGAATCTGATATCTCCTCTTCACCAATCCAATGTCATGATCAGCCTCATAATGTTGGCTCTACATCAAGAAACTCACCAGTTGGTCATGACCACCCACTTCCACATAGAGAGACACATGAACATGGTAATCCAAGCACACCCTTGAGTGGGAAAAAAATTTTGGTTGCCGAGGATGATGAGCTTTTGAGCTATTTGGCTATGAGAATTCTGTTAAAGGAGGGAGCAAATGTGAAGCTTTGTAAAAATGGAAGAGAAGCTCTAGACGTAATTCAAATAGATCTAGACAACCAAGGGAAACATGAATATGATTTTGTACTAATGGACTGTCAGGTAATGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

735

Amino Acids

81.67

Weight (kDa)

6.61

Isoelectric Point (pI)

36.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisKA	PF00512	47 - 112	2.6e-06	His Kinase A (phospho-acceptor) domain
HATPase_c	PF02518	234 - 323	3.6e-15	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1586
Acc16I	TGCGCA	1 cut(s)	612
AccB7I	CCANNNNNTGG	2 cut(s)	886, 1757
AccBSI	CCGCTC	2 cut(s)	483, 1222
AccI	GTMKAC	2 cut(s)	1094, 1236
AccIII	TCCGGA	1 cut(s)	1684
AciI	CCGC	6 cut(s)	332, 483, 1156, 1222, 1225, 1646
AclWI	GGATC	6 cut(s)	437, 450, 725, 1002, 1676, 1813
AcsI	RAATTY	7 cut(s)	359, 539, 598, 746, 780, 2019, 2067
AcuI	CTGAAG	3 cut(s)	531, 937, 1341
AcvI	CACGTG	1 cut(s)	478
AfaI	GTAC	8 cut(s)	82, 277, 856, 891, 1200, 1469, 1720, 2178
AfiI	CCNNNNNNNGG	8 cut(s)	49, 886, 1024, 1358, 1684, 1757, 2009, 2010
AflII	CTTAAG	1 cut(s)	500
AflIII	ACRYGT	2 cut(s)	475, 556
AhlI	ACTAGT	1 cut(s)	1169
AjnI	CCWGG	2 cut(s)	231, 1088
AjuI	GAANNNNNNNTTGG	2 cut(s)	2006, 2038
Alw21I	GWGCWC	4 cut(s)	1440, 1484, 1768, 1828
Alw26I	GTCTC	5 cut(s)	116, 888, 1656, 1822, 1967
Alw44I	GTGCAC	2 cut(s)	1436, 1764
AlwI	GGATC	6 cut(s)	437, 450, 725, 1002, 1676, 1813
AlwNI	CAGNNNCTG	1 cut(s)	886
Ama87I	CYCGRG	1 cut(s)	1821
Aor13HI	TCCGGA	1 cut(s)	1684
AoxI	GGCC	2 cut(s)	1603, 1675
ApaLI	GTGCAC	2 cut(s)	1436, 1764
ApeKI	GCWGC	3 cut(s)	53, 56, 1254
ApoI	RAATTY	7 cut(s)	359, 539, 598, 746, 780, 2019, 2067
ArsI	GACNNNNNNTTYG	2 cut(s)	1076, 1108
AseI	ATTAAT	2 cut(s)	981, 1070
Asp700I	GAANNNNTTC	1 cut(s)	1151
AspA2I	CCTAGG	1 cut(s)	1139
AspLEI	GCGC	1 cut(s)	613
AspS9I	GGNCC	2 cut(s)	1559, 1626
AsuHPI	GGTGA	7 cut(s)	497, 772, 947, 1043, 1153, 1875, 1929
AsuNHI	GCTAGC	1 cut(s)	1297
AvaI	CYCGRG	1 cut(s)	1821
AvaII	GGWCC	2 cut(s)	1559, 1626
AvrII	CCTAGG	1 cut(s)	1139
AxyI	CCTNAGG	1 cut(s)	1176
BaeGI	GKGCMC	3 cut(s)	1440, 1711, 1768
BamHI	GGATCC	1 cut(s)	442
BanII	GRGCYC	2 cut(s)	239, 1828
BarI	GAAGNNNNNNTAC	2 cut(s)	1731, 1763
BbrPI	CACGTG	1 cut(s)	478
BbsI	GAAGAC	3 cut(s)	13, 1347, 1502
Bbv12I	GWGCWC	4 cut(s)	1440, 1484, 1768, 1828
BbvI	GCAGC	3 cut(s)	40, 43, 1241
BccI	CCATC	3 cut(s)	334, 415, 692
BceAI	ACGGC	1 cut(s)	685
BciT130I	CCWGG	2 cut(s)	233, 1090
BclI	TGATCA	3 cut(s)	204, 625, 1900
BcoDI	GTCTC	5 cut(s)	116, 888, 1656, 1822, 1967
BcuI	ACTAGT	1 cut(s)	1169
BfmI	CTRYAG	1 cut(s)	1551
BfrI	CTTAAG	1 cut(s)	500
BglII	AGATCT	1 cut(s)	2140
BisI	GCNGC	4 cut(s)	54, 57, 1223, 1255
BlnI	CCTAGG	1 cut(s)	1139
BlsI	GCNGC	4 cut(s)	55, 58, 1224, 1256
Bme1390I	CCNGG	2 cut(s)	233, 1090
Bme18I	GGWCC	2 cut(s)	1559, 1626
BmeT110I	CYCGRG	1 cut(s)	1821
BmgT120I	GGNCC	2 cut(s)	1559, 1626
BmiI	GGNNCC	2 cut(s)	238, 444
BmrFI	CCNGG	2 cut(s)	233, 1090
BmsI	GCATC	5 cut(s)	136, 259, 888, 1167, 1529
BmtI	GCTAGC	1 cut(s)	1301
BpiI	GAAGAC	3 cut(s)	13, 1347, 1502
Bpu10I	CCTNAGC	1 cut(s)	862
BpuEI	CTTGAG	4 cut(s)	991, 1295, 1411, 2026
Bsa29I	ATCGAT	1 cut(s)	393
BsaAI	YACGTR	1 cut(s)	478
BsaBI	GATNNNNATC	1 cut(s)	624
BsaJI	CCNNGG	8 cut(s)	231, 232, 786, 1088, 1139, 1258, 2031, 2152
BsaWI	WCCGGW	2 cut(s)	1415, 1684
BsaXI	ACNNNNNCTCC	2 cut(s)	2076, 2106
Bsc4I	CCNNNNNNNGG	8 cut(s)	49, 886, 1024, 1358, 1684, 1757, 2009, 2010
Bse1I	ACTGG	4 cut(s)	862, 880, 1240, 1940
Bse21I	CCTNAGG	1 cut(s)	1176
Bse3DI	GCAATG	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	624
BseAI	TCCGGA	1 cut(s)	1684
BseBI	CCWGG	2 cut(s)	233, 1090
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	8 cut(s)	231, 232, 786, 1088, 1139, 1258, 2031, 2152
BseGI	GGATG	5 cut(s)	274, 1342, 1465, 1693, 2041
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	8 cut(s)	49, 886, 1024, 1358, 1684, 1757, 2009, 2010
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	2 cut(s)	111, 1581
BseNI	ACTGG	4 cut(s)	862, 880, 1240, 1940
BseRI	GAGGAG	1 cut(s)	1867
BseSI	GKGCMC	3 cut(s)	1440, 1711, 1768
BseXI	GCAGC	3 cut(s)	40, 43, 1241
BsgI	GTGCAG	1 cut(s)	1642
BshFI	GGCC	2 cut(s)	1605, 1677
BshVI	ATCGAT	1 cut(s)	393
BsiHKAI	GWGCWC	4 cut(s)	1440, 1484, 1768, 1828
BsiHKCI	CYCGRG	1 cut(s)	1821
BsiSI	CCGG	2 cut(s)	1416, 1685
BslFI	GGGAC	4 cut(s)	567, 958, 1305, 1802
BslI	CCNNNNNNNGG	8 cut(s)	49, 886, 1024, 1358, 1684, 1757, 2009, 2010
BsmAI	GTCTC	5 cut(s)	116, 888, 1656, 1822, 1967
BsmFI	GGGAC	4 cut(s)	567, 958, 1305, 1802
BsmI	GAATGC	1 cut(s)	535
BsnI	GGCC	2 cut(s)	1605, 1677
BsoBI	CYCGRG	1 cut(s)	1821
Bsp1286I	GDGCHC	6 cut(s)	239, 1440, 1484, 1711, 1768, 1828
Bsp13I	TCCGGA	1 cut(s)	1684
BspACI	CCGC	6 cut(s)	332, 483, 1156, 1222, 1225, 1646
BspANI	GGCC	2 cut(s)	1605, 1677
BspCNI	CTCAG	2 cut(s)	112, 1582
BspDI	ATCGAT	1 cut(s)	393
BspEI	TCCGGA	1 cut(s)	1684
BspHI	TCATGA	4 cut(s)	594, 1245, 1897, 1948
BspLI	GGNNCC	2 cut(s)	238, 444
BspOI	GCTAGC	1 cut(s)	1301
BspPI	GGATC	6 cut(s)	437, 450, 725, 1002, 1676, 1813
BspQI	GCTCTTC	2 cut(s)	1212, 1244
BspTI	CTTAAG	1 cut(s)	500
BsrBI	CCGCTC	2 cut(s)	483, 1222
BsrDI	GCAATG	1 cut(s)	226
BsrI	ACTGG	4 cut(s)	862, 880, 1240, 1940
BssECI	CCNNGG	8 cut(s)	231, 232, 786, 1088, 1139, 1258, 2031, 2152
BssNAI	GTATAC	1 cut(s)	1237
BssT1I	CCWWGG	4 cut(s)	786, 1139, 1258, 2152
Bst1107I	GTATAC	1 cut(s)	1237
Bst2UI	CCWGG	2 cut(s)	233, 1090
Bst4CI	ACNGT	4 cut(s)	565, 693, 1630, 2189
Bst6I	CTCTTC	5 cut(s)	378, 1212, 1244, 1885, 2107
BstAFI	CTTAAG	1 cut(s)	500
BstBAI	YACGTR	1 cut(s)	478
BstC8I	GCNNGC	6 cut(s)	51, 163, 190, 615, 1299, 1850
BstDEI	CTNAG	5 cut(s)	120, 289, 862, 1176, 1590
BstEII	GGTNACC	1 cut(s)	1031
BstF5I	GGATG	5 cut(s)	274, 1342, 1465, 1693, 2041
BstHHI	GCGC	1 cut(s)	613
BstMAI	GTCTC	5 cut(s)	116, 888, 1656, 1822, 1967
BstNI	CCWGG	2 cut(s)	233, 1090
BstNSI	RCATGY	4 cut(s)	276, 560, 617, 951
BstPI	GGTNACC	1 cut(s)	1031
BstSCI	CCNGG	2 cut(s)	231, 1088
BstSFI	CTRYAG	1 cut(s)	1551
BstSLI	GKGCMC	3 cut(s)	1440, 1711, 1768
BstV1I	GCAGC	3 cut(s)	40, 43, 1241
BstV2I	GAAGAC	3 cut(s)	13, 1347, 1502
BstX2I	RGATCY	2 cut(s)	442, 2140
BstYI	RGATCY	2 cut(s)	442, 2140
BstZ17I	GTATAC	1 cut(s)	1237
Bsu15I	ATCGAT	1 cut(s)	393
Bsu36I	CCTNAGG	1 cut(s)	1176
BsuRI	GGCC	2 cut(s)	1605, 1677
BsuTUI	ATCGAT	1 cut(s)	393
BtsCI	GGATG	5 cut(s)	274, 1342, 1465, 1693, 2041
BtsI	GCAGTG	2 cut(s)	606, 717
BtsIMutI	CAGTG	3 cut(s)	606, 717, 1281
Cac8I	GCNNGC	6 cut(s)	51, 163, 190, 615, 1299, 1850
CaiI	CAGNNNCTG	1 cut(s)	886
CciI	TCATGA	4 cut(s)	594, 1245, 1897, 1948
CfoI	GCGC	1 cut(s)	613
Cfr13I	GGNCC	2 cut(s)	1559, 1626
ClaI	ATCGAT	1 cut(s)	393
Csp6I	GTAC	8 cut(s)	81, 276, 855, 890, 1199, 1468, 1719, 2177
CspCI	CAANNNNNGTGG	2 cut(s)	1495, 1530
CviQI	GTAC	8 cut(s)	81, 276, 855, 890, 1199, 1468, 1719, 2177
DdeI	CTNAG	5 cut(s)	120, 289, 862, 1176, 1590
DraI	TTTAAA	1 cut(s)	417
Eam1104I	CTCTTC	5 cut(s)	378, 1212, 1244, 1885, 2107
EarI	CTCTTC	5 cut(s)	378, 1212, 1244, 1885, 2107
EciI	GGCGGA	1 cut(s)	1240
Ecl136II	GAGCTC	1 cut(s)	1826
Eco130I	CCWWGG	4 cut(s)	786, 1139, 1258, 2152
Eco147I	AGGCCT	1 cut(s)	1605
Eco24I	GRGCYC	2 cut(s)	239, 1828
Eco32I	GATATC	3 cut(s)	213, 1844, 1873
Eco47I	GGWCC	2 cut(s)	1559, 1626
Eco53kI	GAGCTC	1 cut(s)	1826
Eco57I	CTGAAG	3 cut(s)	531, 937, 1341
Eco72I	CACGTG	1 cut(s)	478
Eco81I	CCTNAGG	1 cut(s)	1176
Eco88I	CYCGRG	1 cut(s)	1821
Eco91I	GGTNACC	1 cut(s)	1031
EcoICRI	GAGCTC	1 cut(s)	1826
EcoO65I	GGTNACC	1 cut(s)	1031
EcoRI	GAATTC	3 cut(s)	598, 780, 2067
EcoRII	CCWGG	2 cut(s)	231, 1088
EcoRV	GATATC	3 cut(s)	213, 1844, 1873
EcoT14I	CCWWGG	4 cut(s)	786, 1139, 1258, 2152
EcoT22I	ATGCAT	2 cut(s)	274, 903
EcoT38I	GRGCYC	2 cut(s)	239, 1828
ErhI	CCWWGG	4 cut(s)	786, 1139, 1258, 2152
FalI	AAGNNNNNCTT	2 cut(s)	1695, 1727
FaqI	GGGAC	4 cut(s)	567, 958, 1305, 1802
FauI	CCCGC	1 cut(s)	325
FbaI	TGATCA	3 cut(s)	204, 625, 1900
FblI	GTMKAC	2 cut(s)	1094, 1236
Fnu4HI	GCNGC	4 cut(s)	54, 57, 1223, 1255
FokI	GGATG	5 cut(s)	281, 1329, 1472, 1700, 2048
FriOI	GRGCYC	2 cut(s)	239, 1828
Fsp4HI	GCNGC	4 cut(s)	54, 57, 1223, 1255
FspI	TGCGCA	1 cut(s)	612
GlaI	GCGC	1 cut(s)	612
GluI	GCNGC	4 cut(s)	54, 57, 1223, 1255
HaeIII	GGCC	2 cut(s)	1605, 1677
HapII	CCGG	2 cut(s)	1416, 1685
HhaI	GCGC	1 cut(s)	613
Hin6I	GCGC	1 cut(s)	611
HinP1I	GCGC	1 cut(s)	611
HincII	GTYRAC	1 cut(s)	1095
HindII	GTYRAC	1 cut(s)	1095
HindIII	AAGCTT	1 cut(s)	2096
HinfI	GANTC	6 cut(s)	70, 620, 767, 1187, 1412, 1865
HpaII	CCGG	2 cut(s)	1416, 1685
HphI	GGTGA	7 cut(s)	497, 772, 947, 1043, 1153, 1875, 1929
Hpy166II	GTNNAC	5 cut(s)	922, 1095, 1237, 1438, 1766
Hpy188I	TCNGA	9 cut(s)	145, 241, 550, 582, 625, 630, 697, 1369, 1870
Hpy8I	GTNNAC	5 cut(s)	922, 1095, 1237, 1438, 1766
HpyAV	CCTTC	5 cut(s)	415, 489, 842, 1330, 1616
HpyCH4III	ACNGT	4 cut(s)	565, 693, 1630, 2189
HpyCH4IV	ACGT	3 cut(s)	477, 1466, 2127
HpyF3I	CTNAG	5 cut(s)	120, 289, 862, 1176, 1590
HpySE526I	ACGT	3 cut(s)	477, 1466, 2127
HspAI	GCGC	1 cut(s)	611
Kpn2I	TCCGGA	1 cut(s)	1684
Ksp22I	TGATCA	3 cut(s)	204, 625, 1900
LguI	GCTCTTC	2 cut(s)	1212, 1244
LmnI	GCTCC	3 cut(s)	242, 1831, 2084
Lsp1109I	GCAGC	3 cut(s)	40, 43, 1241
LweI	GCATC	5 cut(s)	136, 259, 888, 1167, 1529
MaeII	ACGT	3 cut(s)	477, 1466, 2127
MaeIII	GTNAC	2 cut(s)	559, 1031
MbiI	CCGCTC	2 cut(s)	483, 1222
MfeI	CAATTG	2 cut(s)	1061, 1128
MflI	RGATCY	2 cut(s)	442, 2140
MhlI	GDGCHC	6 cut(s)	239, 1440, 1484, 1711, 1768, 1828
MlyI	GAGTC	1 cut(s)	1406
MmeI	TCCRAC	3 cut(s)	397, 420, 1783
Mph1103I	ATGCAT	2 cut(s)	274, 903
MroI	TCCGGA	1 cut(s)	1684
MroXI	GAANNNNTTC	1 cut(s)	1151
MslI	CAYNNNNRTG	4 cut(s)	1331, 1857, 1983, 2166
MspA1I	CMGCKG	1 cut(s)	1556
MspCI	CTTAAG	1 cut(s)	500
MspI	CCGG	2 cut(s)	1416, 1685
MspR9I	CCNGG	2 cut(s)	233, 1090
MunI	CAATTG	2 cut(s)	1061, 1128
Mva1269I	GAATGC	1 cut(s)	535
MvaI	CCWGG	2 cut(s)	233, 1090
NheI	GCTAGC	1 cut(s)	1297
NlaIV	GGNNCC	2 cut(s)	238, 444
NmeAIII	GCCGAG	1 cut(s)	2056
NmuCI	GTSAC	2 cut(s)	559, 1031
NsbI	TGCGCA	1 cut(s)	612
NsiI	ATGCAT	2 cut(s)	274, 903
NspI	RCATGY	4 cut(s)	276, 560, 617, 951
PaeI	GCATGC	1 cut(s)	617
PaeR7I	CTCGAG	1 cut(s)	1821
PagI	TCATGA	4 cut(s)	594, 1245, 1897, 1948
PasI	CCCWGGG	1 cut(s)	232
PceI	AGGCCT	1 cut(s)	1605
PciI	ACATGT	1 cut(s)	556
PciSI	GCTCTTC	2 cut(s)	1212, 1244
PctI	GAATGC	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	1151
PfeI	GAWTC	5 cut(s)	70, 620, 767, 1187, 1865
PflMI	CCANNNNNTGG	2 cut(s)	886, 1757
PkrI	GCNGC	4 cut(s)	55, 58, 1224, 1256
PleI	GAGTC	1 cut(s)	1406
PmaCI	CACGTG	1 cut(s)	478
PmlI	CACGTG	1 cut(s)	478
PpsI	GAGTC	1 cut(s)	1406
Ppu21I	YACGTR	1 cut(s)	478
PscI	ACATGT	1 cut(s)	556
PshBI	ATTAAT	2 cut(s)	981, 1070
PsiI	TTATAA	1 cut(s)	1586
Psp124BI	GAGCTC	1 cut(s)	1828
Psp6I	CCWGG	2 cut(s)	231, 1088
PspCI	CACGTG	1 cut(s)	478
PspEI	GGTNACC	1 cut(s)	1031
PspGI	CCWGG	2 cut(s)	231, 1088
PspN4I	GGNNCC	2 cut(s)	238, 444
PspPI	GGNCC	2 cut(s)	1559, 1626
PstNI	CAGNNNCTG	1 cut(s)	886
PsuI	RGATCY	2 cut(s)	442, 2140
PvuII	CAGCTG	1 cut(s)	1556
RsaI	GTAC	8 cut(s)	82, 277, 856, 891, 1200, 1469, 1720, 2178
RsaNI	GTAC	8 cut(s)	81, 276, 855, 890, 1199, 1468, 1719, 2177
RseI	CAYNNNNRTG	4 cut(s)	1331, 1857, 1983, 2166
SacI	GAGCTC	1 cut(s)	1828
SalI	GTCGAC	1 cut(s)	1093
SapI	GCTCTTC	2 cut(s)	1212, 1244
SatI	GCNGC	4 cut(s)	54, 57, 1223, 1255
Sau96I	GGNCC	2 cut(s)	1559, 1626
SchI	GAGTC	1 cut(s)	1406
ScrFI	CCNGG	2 cut(s)	233, 1090
SduI	GDGCHC	6 cut(s)	239, 1440, 1484, 1711, 1768, 1828
SfaNI	GCATC	5 cut(s)	136, 259, 888, 1167, 1529
SfcI	CTRYAG	1 cut(s)	1551
Sfr274I	CTCGAG	1 cut(s)	1821
SinI	GGWCC	2 cut(s)	1559, 1626
SlaI	CTCGAG	1 cut(s)	1821
SmiMI	CAYNNNNRTG	4 cut(s)	1331, 1857, 1983, 2166
SmlI	CTYRAG	6 cut(s)	500, 970, 1310, 1390, 1821, 2005
SmoI	CTYRAG	6 cut(s)	500, 970, 1310, 1390, 1821, 2005
SpeI	ACTAGT	1 cut(s)	1169
SphI	GCATGC	1 cut(s)	617
SseBI	AGGCCT	1 cut(s)	1605
SsiI	CCGC	6 cut(s)	332, 483, 1156, 1222, 1225, 1646
SspI	AATATT	1 cut(s)	510
SstI	GAGCTC	1 cut(s)	1828
StuI	AGGCCT	1 cut(s)	1605
StyD4I	CCNGG	2 cut(s)	231, 1088
StyI	CCWWGG	4 cut(s)	786, 1139, 1258, 2152
TaaI	ACNGT	4 cut(s)	565, 693, 1630, 2189
TaiI	ACGT	3 cut(s)	480, 1469, 2130
TaqI	TCGA	4 cut(s)	112, 393, 1094, 1822
TatI	WGTACW	3 cut(s)	275, 1198, 2176
TauI	GCSGC	1 cut(s)	1225
TfiI	GAWTC	5 cut(s)	70, 620, 767, 1187, 1865
TscAI	CASTG	3 cut(s)	613, 717, 1281
TseFI	GTSAC	2 cut(s)	559, 1031
TseI	GCWGC	3 cut(s)	53, 56, 1254
Tsp45I	GTSAC	2 cut(s)	559, 1031
TspGWI	ACGGA	1 cut(s)	1341
TspRI	CASTG	3 cut(s)	613, 717, 1281
Van91I	CCANNNNNTGG	2 cut(s)	886, 1757
Vha464I	CTTAAG	1 cut(s)	500
VneI	GTGCAC	2 cut(s)	1436, 1764
VpaK11BI	GGWCC	2 cut(s)	1559, 1626
VspI	ATTAAT	2 cut(s)	981, 1070
XapI	RAATTY	7 cut(s)	359, 539, 598, 746, 780, 2019, 2067
XbaI	TCTAGA	2 cut(s)	2122, 2143
XceI	RCATGY	4 cut(s)	276, 560, 617, 951
XhoI	CTCGAG	1 cut(s)	1821
XmaJI	CCTAGG	1 cut(s)	1139
XmiI	GTMKAC	2 cut(s)	1094, 1236
XmnI	GAANNNNTTC	1 cut(s)	1151
Zsp2I	ATGCAT	2 cut(s)	274, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.