Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Reverse (-)

67688203 .. 67691572

Gene Structure 3370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21652

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2736 bp

ATGAAGCTCCCCTCGTTGACTGTGTTGCAGCATGTTTTTGTCATCTTTTTGGTTACAAGTGTGCTGGTACTTTCTAGTCTATTAATAGGAATCATCAAACGTATCGAGCATAATGTAAGTTTTAATCTTCTAAAACCTAAAGTAATTTTAATTTTTAAAGTAGAATTTGATATTATGGAGAGCACAGCACATACAGCCTATATTAATGATCATAAACTATATCTTGAGTTTCAGGTTTATGTACTGGCTCCCAGGGAGAGAGAGTTAATGAACTTTGTTCATAACCATTGCAGTGCTTCACTTATCCTCATTTTTGTGATGATTGCTACAATGGGTGTCTTCATCTTCAGTTACACTTTCATAATGCTAACTGTTGCGAAACGGGAAATGCATCGTTATGCCACACTCATAGAACAAAGGGAGAAAACTGAGCAAGCTGAGAGAAAGAGCATGAGGAAAAGTGATGCATTTGCTAAAGCAAGCCATGACATTCGTGCTGCGCTTGCTGGAATTATTAGTTGGATCAACTTCTGTAAAGATGATATTCATGATGCGCTTGATCTTCATGCCACAAATGGTGGAACTACCCGGCATTCTGAAATAGAGACAGTTTTAACAAAAATAGATTCCAACTTAAAAAGACTGGATGTTCATGCAGAAGATCTTTTAGGTATATTGAACTCTGTTCTTGATAAAAGCAAAATTGAAGCAGGTAAGATGGTACTTGAAAATGAAGAATTTGATGTGGCTCAGCTTGTTGAAGAGGTAGTGGATTTGTTTCTTCCAACAGCATCAATGAAGGGATTAGATGTGGTGTTGGATCCTTGTGATGGATCTGTTATAAAGTTTGCACGTGTGAGAGGTGACAGGGGAAGGCTTAAGCAGATACTAAACAACTTGCTAAGCAATGCTGTTAAATTTACGTCAGAAGGGCAAATCACAATCCGCACCTGGGTCCGAAAACCAAGTTTTAAGAAGTCAATAACTGCTTCTCGTGAGCGGACTAATGGTTTCTTGAAACAGTTCTTGTGCTTCTTTAATTACAAGAACATGAACAATGATGACAAGGAAGTAGTGGATGGTTCTGAACGTGATCCAAATGCTTTGGAATTTGTTTTTGAGGTGGATGATACTGGTAGGGGAATTCTCAAGGAGAGGCAAAAATCAGTGTTCGAGGACTATGTCCAAGTCAAAGAAAAAGCACTTGGAGAAGGTGGTACCGGCTTAGGACTGGGAATTGTTCAATCTCTGGTGCGTTTGATGCATGGAGAAATAGGAATTGTGGACAAGGAGATTGGGGAAAGAGGGACATGCTTCAGGTTCAATGTACTGCTAAGCACTATTAATACCTGTGAGGATAGCATAAAAGTAGAACCAGACATTGAAATTGGAATTAGTGACTTAAACCCTAGTCCCGGGCCGACTGTCAATCAAACACCAATTGCAAGCCCCAAGTTGAACATTCGCAGTACCACCGCGAGTCCTAAGGTCGAGGGATCCTATGTTGTAATGCTGATTAAAAATGCAGAGCGCAGGAGAGTTACACAGAATTTTATGGAGAGACTTGGGATAAAAGTATCAGTAGCAGAACGATGGGAACAACTTGCTCGTACTCTCCAGAACATAAAAAACAAGAAGATTTACCATTCTCAACATAATTCCATATCAGGAATACCTGATTTGGGTCTGCAGGATTGCTTGATCAAATCCGCCTCATGCAACTCCAACTTCAGCTTTAATAGAGCAAAGGAAGCGTCTTTGATGAGTTCCATGGATGGATCAACAGATAACAACATTCTTTCTCTCTTTCATAAGAAGAGTAGTAGTAGTAATCTTCGTGGAGCATATGATCGCTTCGTAATGCTACTTATTGATACTACAGGTGGACCACTCCCCGAACTATGCAAGATTGTGAATGATTTCAAAAGAGGCCTCCAAAATGGTTGGTACTGCAAGGTTGTTTGGTTATCAAGTCCATTTACTCATAGCGATTTAAGCTTCAACAGAGATATGTTGGAAGGCGATGATGTTATCAAACACAAGCCTCTACATGGTACTTGTCTATATGAAGTTGTAAGACTTCTTCCAGAGTGCGGAGGCGCATTACCAAAAAGATCATCAGGTCAGGTTGCATCAAAACTAGTTTCCACAGCTCTTGGTTCACCAAGAAATCAGTACATTCATACCGATGATGACAACTCCCCTGACCAAATAGTACAAGAGAGTAATTCACCAACTCTTCAACATCATCAACCTCCTAACAATATTGGCTCCAAATCAGCAAGTCAATCAGCCCCAGCAGACCATGGCAACAAACCCTTGACTGGGAAGAAAATCTTGGTTGCAGAGGACACAGCATCGTTACGCATGGTGGCTATGCAGGCTTTGTCACGATTGGGTGCAACTGTGAAGCTTTGTGAAAATGGAAGAGAAGCTTTGGATCTAATTCGCAATGATCTACTCAATCAAAGGAAACATGTCTATGACTATATACTGATGGATTGCCAGATGCCAGAAATGGATGGGTTCGAAGCGACCAGGGAAATCAGGAAAGAGGAGAAATCTTACAATGTTCGCATTCCGATCATCGCATTAACAGCTCATGCAAAAGGAGGCGAGGAAACAAGAAGGATGATGGAGGCTGGTATGGACGAACATTTAGAGAAAACCTCCATAGTAACTAGTCTAAGGGAAACACTTGCAAAGATTGATCATAGTACGAAAGCAACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

911

Amino Acids

102.01

Weight (kDa)

7.36

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	370 - 443	3.9e-12	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Response_reg	PF00072	779 - 899	1.4e-19	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	842
Acc36I	ACCTGC	1 cut(s)	701
Acc65I	GGTACC	1 cut(s)	1217
AccB1I	GGYRCC	1 cut(s)	1217
AccBSI	CCGCTC	1 cut(s)	1000
AccII	CGCG	1 cut(s)	1478
AciI	CCGC	5 cut(s)	946, 1000, 1476, 1710, 2094
AclWI	GGATC	9 cut(s)	530, 815, 828, 841, 1088, 1491, 1504, 1786, 2448
AcsI	RAATTY	6 cut(s)	164, 737, 917, 1109, 1143, 1549
AcuI	CTGAAG	3 cut(s)	331, 1300, 1714
AcvI	CACGTG	1 cut(s)	854
AfiI	CCNNNNNNNGG	8 cut(s)	830, 952, 1415, 1682, 2051, 2093, 2324, 2325
AflII	CTTAAG	1 cut(s)	878
AflIII	ACRYGT	2 cut(s)	853, 2476
AhlI	ACTAGT	2 cut(s)	2140, 2681
AjnI	CCWGG	3 cut(s)	251, 950, 2537
AjuI	GAANNNNNNNTTGG	6 cut(s)	502, 534, 1188, 1220, 2321, 2353
Alw21I	GWGCWC	1 cut(s)	185
Alw26I	GTCTC	2 cut(s)	599, 1555
AlwI	GGATC	9 cut(s)	530, 815, 828, 841, 1088, 1491, 1504, 1786, 2448
Ama87I	CYCGRG	1 cut(s)	1415
AoxI	GGCC	2 cut(s)	1418, 1930
ApeKI	GCWGC	2 cut(s)	28, 497
ApoI	RAATTY	6 cut(s)	164, 737, 917, 1109, 1143, 1549
ArsI	GACNNNNNNTTYG	2 cut(s)	1739, 1771
AseI	ATTAAT	3 cut(s)	83, 204, 1344
Asp700I	GAANNNNTTC	2 cut(s)	1022, 1919
Asp718I	GGTACC	1 cut(s)	1217
AspLEI	GCGC	4 cut(s)	502, 556, 1533, 2102
AspS9I	GGNCC	3 cut(s)	955, 1418, 1886
AsuC2I	CCSGG	3 cut(s)	589, 1416, 1417
AsuHPI	GGTGA	3 cut(s)	875, 2154, 2223
AsuII	TTCGAA	1 cut(s)	2529
AvaI	CYCGRG	1 cut(s)	1415
AvaII	GGWCC	2 cut(s)	955, 1886
AxyI	CCTNAGG	1 cut(s)	1485
BamHI	GGATCC	2 cut(s)	820, 1496
BanI	GGYRCC	1 cut(s)	1217
BarI	GAAGNNNNNNTAC	2 cut(s)	2067, 2099
BauI	CACGAG	1 cut(s)	993
BbrPI	CACGTG	1 cut(s)	854
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	185
BbvI	GCAGC	2 cut(s)	40, 484
BccI	CCATC	8 cut(s)	712, 824, 1073, 1587, 1769, 2491, 2516, 2629
BciT130I	CCWGG	3 cut(s)	253, 952, 2539
BclI	TGATCA	3 cut(s)	208, 1701, 2710
BcnI	CCSGG	3 cut(s)	589, 1416, 1417
BcoDI	GTCTC	2 cut(s)	599, 1555
BcuI	ACTAGT	2 cut(s)	2140, 2681
BfaI	CTAG	6 cut(s)	75, 1410, 2141, 2682, 2730, 2734
BfmI	CTRYAG	2 cut(s)	1688, 1878
BfrI	CTTAAG	1 cut(s)	878
BfuAI	ACCTGC	1 cut(s)	701
BglII	AGATCT	1 cut(s)	661
BisI	GCNGC	2 cut(s)	29, 498
BlpI	GCTNAGC	3 cut(s)	750, 902, 1334
BlsI	GCNGC	2 cut(s)	30, 499
Bme1390I	CCNGG	6 cut(s)	253, 589, 952, 1416, 1417, 2539
Bme18I	GGWCC	2 cut(s)	955, 1886
BmeT110I	CYCGRG	1 cut(s)	1415
BmgT120I	GGNCC	3 cut(s)	955, 1418, 1886
BmiI	GGNNCC	6 cut(s)	249, 822, 956, 1219, 1498, 2272
BmrFI	CCNGG	6 cut(s)	253, 589, 952, 1416, 1417, 2539
BmrI	ACTGGG	2 cut(s)	1241, 2334
BmsI	GCATC	8 cut(s)	400, 454, 541, 800, 1251, 2141, 2366, 2499
BmuI	ACTGGG	2 cut(s)	1241, 2334
BpiI	GAAGAC	1 cut(s)	331
BplI	GAGNNNNNCTC	2 cut(s)	2654, 2686
BpmI	CTGGAG	1 cut(s)	1601
Bpu10I	CCTNAGC	1 cut(s)	1225
Bpu1102I	GCTNAGC	3 cut(s)	750, 902, 1334
Bpu14I	TTCGAA	1 cut(s)	2529
BpuEI	CTTGAG	2 cut(s)	245, 1133
BpuMI	CCSGG	3 cut(s)	589, 1416, 1417
BsaAI	YACGTR	1 cut(s)	854
BsaJI	CCNNGG	7 cut(s)	251, 252, 951, 1415, 1770, 2305, 2538
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	8 cut(s)	830, 952, 1415, 1682, 2051, 2093, 2324, 2325
Bse118I	RCCGGY	1 cut(s)	1220
Bse1I	ACTGG	5 cut(s)	249, 648, 1138, 1236, 2329
Bse21I	CCTNAGG	1 cut(s)	1485
Bse3DI	GCAATG	3 cut(s)	286, 913, 2458
BseBI	CCWGG	3 cut(s)	253, 952, 2539
BseDI	CCNNGG	7 cut(s)	251, 252, 951, 1415, 1770, 2305, 2538
BseGI	GGATG	6 cut(s)	652, 1084, 1132, 1780, 2527, 2637
BseLI	CCNNNNNNNGG	8 cut(s)	830, 952, 1415, 1682, 2051, 2093, 2324, 2325
BseMI	GCAATG	3 cut(s)	286, 913, 2458
BseMII	CTCAG	3 cut(s)	420, 429, 764
BseNI	ACTGG	5 cut(s)	249, 648, 1138, 1236, 2329
BseRI	GAGGAG	1 cut(s)	2570
BseXI	GCAGC	2 cut(s)	40, 484
BseYI	CCCAGC	1 cut(s)	2296
Bsh1236I	CGCG	1 cut(s)	1478
BshFI	GGCC	2 cut(s)	1420, 1932
BshNI	GGYRCC	1 cut(s)	1217
BsiHKAI	GWGCWC	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	1415
BsiSI	CCGG	3 cut(s)	589, 1221, 1416
BslFI	GGGAC	2 cut(s)	1321, 1398
BslI	CCNNNNNNNGG	8 cut(s)	830, 952, 1415, 1682, 2051, 2093, 2324, 2325
BsmAI	GTCTC	2 cut(s)	599, 1555
BsmFI	GGGAC	2 cut(s)	1321, 1398
BsmI	GAATGC	2 cut(s)	592, 2577
BsnI	GGCC	2 cut(s)	1420, 1932
BsoBI	CYCGRG	1 cut(s)	1415
Bsp119I	TTCGAA	1 cut(s)	2529
Bsp1286I	GDGCHC	1 cut(s)	185
Bsp1720I	GCTNAGC	3 cut(s)	750, 902, 1334
Bsp19I	CCATGG	2 cut(s)	1770, 2305
BspACI	CCGC	5 cut(s)	946, 1000, 1476, 1710, 2094
BspANI	GGCC	2 cut(s)	1420, 1932
BspCNI	CTCAG	3 cut(s)	421, 430, 763
BspFNI	CGCG	1 cut(s)	1478
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	6 cut(s)	249, 822, 956, 1219, 1498, 2272
BspMAI	CTGCAG	1 cut(s)	1692
BspMI	ACCTGC	1 cut(s)	701
BspPI	GGATC	9 cut(s)	530, 815, 828, 841, 1088, 1491, 1504, 1786, 2448
BspT104I	TTCGAA	1 cut(s)	2529
BspT107I	GGYRCC	1 cut(s)	1217
BspTI	CTTAAG	1 cut(s)	878
BsrBI	CCGCTC	1 cut(s)	1000
BsrDI	GCAATG	3 cut(s)	286, 913, 2458
BsrFI	RCCGGY	1 cut(s)	1220
BsrI	ACTGG	5 cut(s)	249, 648, 1138, 1236, 2329
BssAI	RCCGGY	1 cut(s)	1220
BssECI	CCNNGG	7 cut(s)	251, 252, 951, 1415, 1770, 2305, 2538
BssSI	CACGAG	1 cut(s)	993
BssT1I	CCWWGG	2 cut(s)	1770, 2305
Bst2BI	CACGAG	1 cut(s)	993
Bst2UI	CCWGG	3 cut(s)	253, 952, 2539
Bst4CI	ACNGT	6 cut(s)	22, 373, 610, 1023, 1426, 2407
Bst6I	CTCTTC	4 cut(s)	756, 1811, 2244, 2422
BstAFI	CTTAAG	1 cut(s)	878
BstBAI	YACGTR	1 cut(s)	854
BstBI	TTCGAA	1 cut(s)	2529
BstC8I	GCNNGC	5 cut(s)	435, 481, 504, 1447, 2382
BstDEI	CTNAG	8 cut(s)	429, 438, 750, 902, 1225, 1334, 1485, 2687
BstDSI	CCRYGG	2 cut(s)	1770, 2305
BstF5I	GGATG	6 cut(s)	652, 1084, 1132, 1780, 2527, 2637
BstFNI	CGCG	1 cut(s)	1478
BstHHI	GCGC	4 cut(s)	502, 556, 1533, 2102
BstMAI	GTCTC	2 cut(s)	599, 1555
BstMWI	GCNNNNNNNGC	7 cut(s)	194, 503, 1261, 1751, 1995, 2381, 2597
BstNI	CCWGG	3 cut(s)	253, 952, 2539
BstNSI	RCATGY	3 cut(s)	35, 1314, 2480
BstSCI	CCNGG	6 cut(s)	251, 587, 950, 1414, 1415, 2537
BstSFI	CTRYAG	2 cut(s)	1688, 1878
BstUI	CGCG	1 cut(s)	1478
BstV1I	GCAGC	2 cut(s)	40, 484
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	5 cut(s)	661, 820, 833, 1496, 2440
BstYI	RGATCY	5 cut(s)	661, 820, 833, 1496, 2440
Bsu36I	CCTNAGG	1 cut(s)	1485
BsuRI	GGCC	2 cut(s)	1420, 1932
BtgI	CCRYGG	2 cut(s)	1770, 2305
BtgZI	GCGATG	2 cut(s)	2037, 2572
BtsCI	GGATG	6 cut(s)	652, 1084, 1132, 1780, 2527, 2637
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	2 cut(s)	298, 1173
BveI	ACCTGC	1 cut(s)	701
Cac8I	GCNNGC	5 cut(s)	435, 481, 504, 1447, 2382
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	4 cut(s)	502, 556, 1533, 2102
Cfr10I	RCCGGY	1 cut(s)	1220
Cfr13I	GGNCC	3 cut(s)	955, 1418, 1886
Cfr9I	CCCGGG	1 cut(s)	1415
CseI	GACGC	1 cut(s)	1743
CspCI	CAANNNNNGTGG	2 cut(s)	2137, 2172
DdeI	CTNAG	8 cut(s)	429, 438, 750, 902, 1225, 1334, 1485, 2687
DraI	TTTAAA	1 cut(s)	157
Eam1104I	CTCTTC	4 cut(s)	756, 1811, 2244, 2422
EarI	CTCTTC	4 cut(s)	756, 1811, 2244, 2422
EciI	GGCGGA	1 cut(s)	1699
Eco130I	CCWWGG	2 cut(s)	1770, 2305
Eco147I	AGGCCT	1 cut(s)	1932
Eco47I	GGWCC	2 cut(s)	955, 1886
Eco57I	CTGAAG	3 cut(s)	331, 1300, 1714
Eco72I	CACGTG	1 cut(s)	854
Eco81I	CCTNAGG	1 cut(s)	1485
Eco88I	CYCGRG	1 cut(s)	1415
EcoRI	GAATTC	1 cut(s)	1143
EcoRII	CCWGG	3 cut(s)	251, 950, 2537
EcoT14I	CCWWGG	2 cut(s)	1770, 2305
EcoT22I	ATGCAT	3 cut(s)	393, 469, 1266
ErhI	CCWWGG	2 cut(s)	1770, 2305
FalI	AAGNNNNNCTT	4 cut(s)	2321, 2353, 2419, 2451
FaqI	GGGAC	2 cut(s)	1321, 1398
FauNDI	CATATG	1 cut(s)	1846
FbaI	TGATCA	3 cut(s)	208, 1701, 2710
Fnu4HI	GCNGC	2 cut(s)	29, 498
FokI	GGATG	6 cut(s)	659, 1091, 1139, 1787, 2534, 2644
Fsp4HI	GCNGC	2 cut(s)	29, 498
FspBI	CTAG	6 cut(s)	75, 1410, 2141, 2682, 2730, 2734
GlaI	GCGC	4 cut(s)	501, 555, 1532, 2101
GluI	GCNGC	2 cut(s)	29, 498
GsaI	CCCAGC	1 cut(s)	2300
GsuI	CTGGAG	1 cut(s)	1601
HaeIII	GGCC	2 cut(s)	1420, 1932
HapII	CCGG	3 cut(s)	589, 1221, 1416
HgaI	GACGC	1 cut(s)	1743
HhaI	GCGC	4 cut(s)	502, 556, 1533, 2102
Hin6I	GCGC	4 cut(s)	500, 554, 1531, 2100
HinP1I	GCGC	4 cut(s)	500, 554, 1531, 2100
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HindIII	AAGCTT	3 cut(s)	1996, 2411, 2433
HinfI	GANTC	3 cut(s)	90, 626, 1480
HpaII	CCGG	3 cut(s)	589, 1221, 1416
HphI	GGTGA	3 cut(s)	875, 2154, 2223
Hpy166II	GTNNAC	4 cut(s)	18, 1285, 1886, 2162
Hpy188I	TCNGA	5 cut(s)	598, 928, 959, 1087, 2583
Hpy8I	GTNNAC	4 cut(s)	18, 1285, 1886, 2162
HpyAV	CCTTC	6 cut(s)	793, 867, 923, 1205, 2012, 2622
HpyCH4III	ACNGT	6 cut(s)	22, 373, 610, 1023, 1426, 2407
HpyCH4IV	ACGT	4 cut(s)	100, 853, 923, 1090
HpyF10VI	GCNNNNNNNGC	7 cut(s)	194, 503, 1261, 1751, 1995, 2381, 2597
HpyF3I	CTNAG	8 cut(s)	429, 438, 750, 902, 1225, 1334, 1485, 2687
HpySE526I	ACGT	4 cut(s)	100, 853, 923, 1090
HspAI	GCGC	4 cut(s)	500, 554, 1531, 2100
KpnI	GGTACC	1 cut(s)	1221
Ksp22I	TGATCA	3 cut(s)	208, 1701, 2710
LmnI	GCTCC	4 cut(s)	12, 253, 1841, 2276
Lsp1109I	GCAGC	2 cut(s)	40, 484
LweI	GCATC	8 cut(s)	400, 454, 541, 800, 1251, 2141, 2366, 2499
MaeI	CTAG	6 cut(s)	75, 1410, 2141, 2682, 2730, 2734
MaeII	ACGT	4 cut(s)	100, 853, 923, 1090
MaeIII	GTNAC	8 cut(s)	52, 350, 863, 1397, 1540, 2361, 2388, 2677
MbiI	CCGCTC	1 cut(s)	1000
MfeI	CAATTG	1 cut(s)	1440
MflI	RGATCY	5 cut(s)	661, 820, 833, 1496, 2440
MhlI	GDGCHC	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	1489
MmeI	TCCRAC	6 cut(s)	500, 654, 798, 809, 1749, 1995
Mph1103I	ATGCAT	3 cut(s)	393, 469, 1266
MroXI	GAANNNNTTC	2 cut(s)	1022, 1919
MslI	CAYNNNNRTG	5 cut(s)	291, 314, 396, 2187, 2481
MspCI	CTTAAG	1 cut(s)	878
MspI	CCGG	3 cut(s)	589, 1221, 1416
MspR9I	CCNGG	6 cut(s)	253, 589, 952, 1416, 1417, 2539
MunI	CAATTG	1 cut(s)	1440
Mva1269I	GAATGC	2 cut(s)	592, 2577
MvaI	CCWGG	3 cut(s)	253, 952, 2539
MvnI	CGCG	1 cut(s)	1478
MwoI	GCNNNNNNNGC	7 cut(s)	194, 503, 1261, 1751, 1995, 2381, 2597
NciI	CCSGG	3 cut(s)	589, 1416, 1417
NcoI	CCATGG	2 cut(s)	1770, 2305
NdeI	CATATG	1 cut(s)	1846
NlaIV	GGNNCC	6 cut(s)	249, 822, 956, 1219, 1498, 2272
NmuCI	GTSAC	3 cut(s)	863, 1397, 2388
NsiI	ATGCAT	3 cut(s)	393, 469, 1266
NspI	RCATGY	3 cut(s)	35, 1314, 2480
NspV	TTCGAA	1 cut(s)	2529
PagI	TCATGA	1 cut(s)	547
PasI	CCCWGGG	1 cut(s)	252
PceI	AGGCCT	1 cut(s)	1932
PciI	ACATGT	1 cut(s)	2476
PctI	GAATGC	2 cut(s)	592, 2577
PdmI	GAANNNNTTC	2 cut(s)	1022, 1919
PfeI	GAWTC	2 cut(s)	90, 626
PflFI	GACNNNGTC	1 cut(s)	1181
PkrI	GCNGC	2 cut(s)	30, 499
PleI	GAGTC	1 cut(s)	1488
PmaCI	CACGTG	1 cut(s)	854
PmlI	CACGTG	1 cut(s)	854
PpsI	GAGTC	1 cut(s)	1488
Ppu21I	YACGTR	1 cut(s)	854
PscI	ACATGT	1 cut(s)	2476
PshBI	ATTAAT	3 cut(s)	83, 204, 1344
PsiI	TTATAA	1 cut(s)	842
Psp6I	CCWGG	3 cut(s)	251, 950, 2537
PspCI	CACGTG	1 cut(s)	854
PspFI	CCCAGC	1 cut(s)	2296
PspGI	CCWGG	3 cut(s)	251, 950, 2537
PspN4I	GGNNCC	6 cut(s)	249, 822, 956, 1219, 1498, 2272
PspPI	GGNCC	3 cut(s)	955, 1418, 1886
PstI	CTGCAG	1 cut(s)	1692
PsuI	RGATCY	5 cut(s)	661, 820, 833, 1496, 2440
PsyI	GACNNNGTC	1 cut(s)	1181
RseI	CAYNNNNRTG	5 cut(s)	291, 314, 396, 2187, 2481
SatI	GCNGC	2 cut(s)	29, 498
Sau96I	GGNCC	3 cut(s)	955, 1418, 1886
SchI	GAGTC	1 cut(s)	1489
ScrFI	CCNGG	6 cut(s)	253, 589, 952, 1416, 1417, 2539
SduI	GDGCHC	1 cut(s)	185
SfaNI	GCATC	8 cut(s)	400, 454, 541, 800, 1251, 2141, 2366, 2499
SfcI	CTRYAG	2 cut(s)	1688, 1878
SfuI	TTCGAA	1 cut(s)	2529
SinI	GGWCC	2 cut(s)	955, 1886
SmaI	CCCGGG	1 cut(s)	1417
SmiMI	CAYNNNNRTG	5 cut(s)	291, 314, 396, 2187, 2481
SmlI	CTYRAG	3 cut(s)	224, 878, 1148
SmoI	CTYRAG	3 cut(s)	224, 878, 1148
SpeI	ACTAGT	2 cut(s)	2140, 2681
SseBI	AGGCCT	1 cut(s)	1932
SsiI	CCGC	5 cut(s)	946, 1000, 1476, 1710, 2094
SspI	AATATT	1 cut(s)	2266
SspMI	CTAG	6 cut(s)	75, 1410, 2141, 2682, 2730, 2734
StuI	AGGCCT	1 cut(s)	1932
StyD4I	CCNGG	6 cut(s)	251, 587, 950, 1414, 1415, 2537
StyI	CCWWGG	2 cut(s)	1770, 2305
TaaI	ACNGT	6 cut(s)	22, 373, 610, 1023, 1426, 2407
TaiI	ACGT	4 cut(s)	103, 856, 926, 1093
TaqI	TCGA	4 cut(s)	105, 1173, 1491, 2529
TatI	WGTACW	4 cut(s)	241, 1327, 2175, 2215
TfiI	GAWTC	2 cut(s)	90, 626
TscAI	CASTG	2 cut(s)	298, 1173
TseFI	GTSAC	3 cut(s)	863, 1397, 2388
TseI	GCWGC	2 cut(s)	28, 497
Tsp45I	GTSAC	3 cut(s)	863, 1397, 2388
TspMI	CCCGGG	1 cut(s)	1415
TspRI	CASTG	2 cut(s)	298, 1173
Tth111I	GACNNNGTC	1 cut(s)	1181
Vha464I	CTTAAG	1 cut(s)	878
VpaK11BI	GGWCC	2 cut(s)	955, 1886
VspI	ATTAAT	3 cut(s)	83, 204, 1344
XapI	RAATTY	6 cut(s)	164, 737, 917, 1109, 1143, 1549
XceI	RCATGY	3 cut(s)	35, 1314, 2480
XmaI	CCCGGG	1 cut(s)	1415
XmnI	GAANNNNTTC	2 cut(s)	1022, 1919
XspI	CTAG	6 cut(s)	75, 1410, 2141, 2682, 2730, 2734
Zsp2I	ATGCAT	3 cut(s)	393, 469, 1266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.