Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Reverse (-)

66788682 .. 66790079

Gene Structure 1398 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015498

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGAAAAAATCTGATGCAATTACAAGTGCAAGCCATGATGTTCGTAATGCTCTTGCTTGCATGACTGAATTGATCAAGATATCCTGCAATGAAGTTTCTCAGGGCTCCGAAATAAAGAAATATCTAACACAAATGGATGCATGTACTAAACACCTCTTAGCGGGTAAGACGGTACTTGAAGATGAGGAATTTGACATATTCCAACTTGTTGAAGAGGTAATCGATTTCTTTCTTCCATTGGGTTTAAAGAAGGGCGTAGATGTGGTGTTGGATCCTTATGATTGCTCTCTCCTAAAGTCTGCACACGTGAGCGGTGATAGGAGAAGGCTTAAGCAAATATTATGCAACTTATTAGGGAATGCTGTCACATTTACTTTAGAGGGACATGTAACAGTTCGTGCTTGGGTTCAGAAACCTAGTTTCATGAATTCAATCACTGCTGCTAATTTTGATCAGAATAATGGTTTCTTGAAGCATTTGTTGTGTTTTTTGAACAACAAGAACATGACCAAAGAACAGTTAGATGGCATAAAAGCAGTGATTGGTGTTCAACATGATCCAAATTATTTGGAATTTGTTTTTGAGGTGAATGATTCAGGGAGGGGAATTCCCAAGGAGAAGCAAAAAGAAGTGCATGAAAACTATGTCCAAGTCAAAGAAAAAGCTCATGGAGAAGGAGGTACTGGCTTAGGACTTGGTATCATTCAGTCTCTGGTACGCTTGATGCACGGAGAAATAGGAATTGTGGACAAGGAGATTGGTGAAAAAGGGACATGCTTCAGGTTTAATGTTCTCCTGAGAGCTATTAATCTACGTGAGGATCATATAAAATTACAACAAGACCTTGAATTGGGAGGTGACCCTAGTTGTGATGACAGAGATCAACAATCCGGATTAATCGCAAATGCAAACCCCAGAGCGGTGGAGAATAGTTTACCAGTTCATGAAGAGCAGCCTTGGGATAAAGGTATCAGTGGTAGAACAATGGGGACAACTAGCTCATACTCTCAAGAAAGTAGAACACATGAAGATGAAGGGTCATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

349

Amino Acids

38.68

Weight (kDa)

5.51

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	181 - 265	2.9e-14	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	312, 920
AccIII	TCCGGA	1 cut(s)	890
AciI	CCGC	3 cut(s)	161, 312, 920
AclWI	GGATC	4 cut(s)	266, 279, 551, 828
AcsI	RAATTY	4 cut(s)	188, 427, 572, 606
AcuI	CTGAAG	1 cut(s)	763
AcvI	CACGTG	1 cut(s)	307
AfaI	GTAC	4 cut(s)	145, 174, 682, 717
AfiI	CCNNNNNNNGG	3 cut(s)	160, 850, 919
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	2 cut(s)	304, 385
AgsI	TTSAA	7 cut(s)	179, 212, 432, 472, 493, 551, 848
AluBI	AGCT	3 cut(s)	665, 803, 999
AluI	AGCT	3 cut(s)	665, 803, 999
Alw26I	GTCTC	1 cut(s)	714
AlwI	GGATC	4 cut(s)	266, 279, 551, 828
AlwNI	CAGNNNCTG	1 cut(s)	712
Aor13HI	TCCGGA	1 cut(s)	890
ApeKI	GCWGC	2 cut(s)	440, 952
ApoI	RAATTY	4 cut(s)	188, 427, 572, 606
AseI	ATTAAT	2 cut(s)	807, 896
AsuHPI	GGTGA	4 cut(s)	326, 598, 773, 869
BamHI	GGATCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	107
BbrPI	CACGTG	1 cut(s)	307
BbvI	GCAGC	2 cut(s)	427, 964
BccI	CCATC	1 cut(s)	518
BclI	TGATCA	2 cut(s)	72, 451
BcoDI	GTCTC	1 cut(s)	714
BfaI	CTAG	4 cut(s)	417, 864, 996, 1045
BfrI	CTTAAG	1 cut(s)	329
BisI	GCNGC	2 cut(s)	441, 953
BlsI	GCNGC	2 cut(s)	442, 954
BmiI	GGNNCC	2 cut(s)	106, 273
BmsI	GCATC	3 cut(s)	4, 127, 714
Bpu10I	CCTNAGC	1 cut(s)	688
BpuEI	CTTGAG	1 cut(s)	993
Bsa29I	ATCGAT	1 cut(s)	222
BsaAI	YACGTR	2 cut(s)	307, 815
BsaJI	CCNNGG	2 cut(s)	612, 956
BsaWI	WCCGGW	1 cut(s)	890
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 850, 919
Bse1I	ACTGG	2 cut(s)	688, 938
Bse3DI	GCAATG	1 cut(s)	94
BseAI	TCCGGA	1 cut(s)	890
BseCI	ATCGAT	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	612, 956
BseGI	GGATG	2 cut(s)	142, 1040
BseLI	CCNNNNNNNGG	3 cut(s)	160, 850, 919
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	2 cut(s)	113, 788
BseNI	ACTGG	2 cut(s)	688, 938
BseXI	GCAGC	2 cut(s)	427, 964
BsgI	GTGCAG	1 cut(s)	285
BshVI	ATCGAT	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	891
BslFI	GGGAC	3 cut(s)	396, 784, 1003
BslI	CCNNNNNNNGG	3 cut(s)	160, 850, 919
BsmAI	GTCTC	1 cut(s)	714
BsmFI	GGGAC	3 cut(s)	396, 784, 1003
BsmI	GAATGC	1 cut(s)	364
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp13I	TCCGGA	1 cut(s)	890
Bsp143I	GATC	6 cut(s)	72, 271, 451, 556, 820, 880
BspACI	CCGC	3 cut(s)	161, 312, 920
BspCNI	CTCAG	2 cut(s)	112, 789
BspDI	ATCGAT	1 cut(s)	222
BspEI	TCCGGA	1 cut(s)	890
BspHI	TCATGA	2 cut(s)	423, 943
BspLI	GGNNCC	2 cut(s)	106, 273
BspPI	GGATC	4 cut(s)	266, 279, 551, 828
BspQI	GCTCTTC	1 cut(s)	942
BspTI	CTTAAG	1 cut(s)	329
BsrBI	CCGCTC	2 cut(s)	312, 920
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	2 cut(s)	688, 938
BssECI	CCNNGG	2 cut(s)	612, 956
BssMI	GATC	6 cut(s)	72, 271, 451, 556, 820, 880
BssT1I	CCWWGG	2 cut(s)	612, 956
Bst4CI	ACNGT	3 cut(s)	172, 394, 519
Bst6I	CTCTTC	2 cut(s)	207, 942
BstAFI	CTTAAG	1 cut(s)	329
BstBAI	YACGTR	2 cut(s)	307, 815
BstC8I	GCNNGC	2 cut(s)	31, 58
BstDEI	CTNAG	4 cut(s)	99, 157, 688, 797
BstEII	GGTNACC	1 cut(s)	857
BstF5I	GGATG	2 cut(s)	142, 1040
BstKTI	GATC	6 cut(s)	75, 274, 454, 559, 823, 883
BstMAI	GTCTC	1 cut(s)	714
BstMBI	GATC	6 cut(s)	72, 271, 451, 556, 820, 880
BstNSI	RCATGY	3 cut(s)	144, 389, 777
BstPI	GGTNACC	1 cut(s)	857
BstV1I	GCAGC	2 cut(s)	427, 964
BstX2I	RGATCY	1 cut(s)	271
BstXI	CCANNNNNNTGG	1 cut(s)	922
BstYI	RGATCY	1 cut(s)	271
Bsu15I	ATCGAT	1 cut(s)	222
BsuTUI	ATCGAT	1 cut(s)	222
BtsCI	GGATG	2 cut(s)	142, 1040
BtsI	GCAGTG	2 cut(s)	435, 543
BtsIMutI	CAGTG	3 cut(s)	435, 543, 979
Cac8I	GCNNGC	2 cut(s)	31, 58
CaiI	CAGNNNCTG	1 cut(s)	712
CciI	TCATGA	2 cut(s)	423, 943
ClaI	ATCGAT	1 cut(s)	222
Csp6I	GTAC	4 cut(s)	144, 173, 681, 716
CviJI	RGCY	8 cut(s)	33, 105, 328, 665, 687, 803, 955, 999
CviKI_1	RGCY	8 cut(s)	33, 105, 328, 665, 687, 803, 955, 999
CviQI	GTAC	4 cut(s)	144, 173, 681, 716
DdeI	CTNAG	4 cut(s)	99, 157, 688, 797
DpnI	GATC	6 cut(s)	74, 273, 453, 558, 822, 882
DpnII	GATC	6 cut(s)	72, 271, 451, 556, 820, 880
DraI	TTTAAA	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	207, 942
EarI	CTCTTC	2 cut(s)	207, 942
Eco130I	CCWWGG	2 cut(s)	612, 956
Eco24I	GRGCYC	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	763
Eco72I	CACGTG	1 cut(s)	307
Eco91I	GGTNACC	1 cut(s)	857
EcoO65I	GGTNACC	1 cut(s)	857
EcoRI	GAATTC	2 cut(s)	427, 606
EcoRV	GATATC	1 cut(s)	81
EcoT14I	CCWWGG	2 cut(s)	612, 956
EcoT22I	ATGCAT	1 cut(s)	142
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	2 cut(s)	612, 956
FaqI	GGGAC	3 cut(s)	396, 784, 1003
FauI	CCCGC	1 cut(s)	154
FbaI	TGATCA	2 cut(s)	72, 451
Fnu4HI	GCNGC	2 cut(s)	441, 953
FokI	GGATG	2 cut(s)	149, 1027
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	2 cut(s)	441, 953
FspBI	CTAG	4 cut(s)	417, 864, 996, 1045
GluI	GCNGC	2 cut(s)	441, 953
HapII	CCGG	1 cut(s)	891
HinfI	GANTC	1 cut(s)	593
HpaII	CCGG	1 cut(s)	891
HphI	GGTGA	4 cut(s)	326, 598, 773, 869
Hpy166II	GTNNAC	2 cut(s)	748, 935
Hpy188I	TCNGA	4 cut(s)	13, 109, 411, 456
Hpy188III	TCNNGA	7 cut(s)	76, 424, 469, 796, 891, 944, 1010
Hpy8I	GTNNAC	2 cut(s)	748, 935
HpyAV	CCTTC	4 cut(s)	244, 318, 668, 1028
HpyCH4III	ACNGT	3 cut(s)	172, 394, 519
HpyCH4IV	ACGT	2 cut(s)	306, 814
HpyF3I	CTNAG	4 cut(s)	99, 157, 688, 797
HpySE526I	ACGT	2 cut(s)	306, 814
Kpn2I	TCCGGA	1 cut(s)	890
Ksp22I	TGATCA	2 cut(s)	72, 451
Kzo9I	GATC	6 cut(s)	72, 271, 451, 556, 820, 880
LguI	GCTCTTC	1 cut(s)	942
LmnI	GCTCC	1 cut(s)	110
Lsp1109I	GCAGC	2 cut(s)	427, 964
LweI	GCATC	3 cut(s)	4, 127, 714
MaeI	CTAG	4 cut(s)	417, 864, 996, 1045
MaeII	ACGT	2 cut(s)	306, 814
MaeIII	GTNAC	3 cut(s)	364, 388, 857
MalI	GATC	6 cut(s)	74, 273, 453, 558, 822, 882
MbiI	CCGCTC	2 cut(s)	312, 920
MboI	GATC	6 cut(s)	72, 271, 451, 556, 820, 880
MboII	GAAGA	5 cut(s)	191, 224, 224, 959, 1040
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	1 cut(s)	107
MmeI	TCCRAC	2 cut(s)	226, 249
MnlI	CCTC	9 cut(s)	164, 178, 208, 373, 577, 594, 671, 811, 848
Mph1103I	ATGCAT	1 cut(s)	142
MroI	TCCGGA	1 cut(s)	890
MseI	TTAA	5 cut(s)	245, 330, 786, 807, 896
MslI	CAYNNNNRTG	1 cut(s)	1029
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	1 cut(s)	891
Mva1269I	GAATGC	1 cut(s)	364
NdeII	GATC	6 cut(s)	72, 271, 451, 556, 820, 880
NlaIV	GGNNCC	2 cut(s)	106, 273
NmuCI	GTSAC	2 cut(s)	364, 857
NsiI	ATGCAT	1 cut(s)	142
NspI	RCATGY	3 cut(s)	144, 389, 777
PagI	TCATGA	2 cut(s)	423, 943
PciI	ACATGT	1 cut(s)	385
PciSI	GCTCTTC	1 cut(s)	942
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	1 cut(s)	593
PkrI	GCNGC	2 cut(s)	442, 954
PmaCI	CACGTG	1 cut(s)	307
PmlI	CACGTG	1 cut(s)	307
Ppu21I	YACGTR	2 cut(s)	307, 815
PscI	ACATGT	1 cut(s)	385
PshBI	ATTAAT	2 cut(s)	807, 896
PspCI	CACGTG	1 cut(s)	307
PspEI	GGTNACC	1 cut(s)	857
PspN4I	GGNNCC	2 cut(s)	106, 273
PstNI	CAGNNNCTG	1 cut(s)	712
PsuI	RGATCY	1 cut(s)	271
RsaI	GTAC	4 cut(s)	145, 174, 682, 717
RsaNI	GTAC	4 cut(s)	144, 173, 681, 716
RseI	CAYNNNNRTG	1 cut(s)	1029
SapI	GCTCTTC	1 cut(s)	942
SaqAI	TTAA	5 cut(s)	245, 330, 786, 807, 896
SatI	GCNGC	2 cut(s)	441, 953
Sau3AI	GATC	6 cut(s)	72, 271, 451, 556, 820, 880
SduI	GDGCHC	1 cut(s)	107
SfaNI	GCATC	3 cut(s)	4, 127, 714
SmiMI	CAYNNNNRTG	1 cut(s)	1029
SmlI	CTYRAG	2 cut(s)	329, 1008
SmoI	CTYRAG	2 cut(s)	329, 1008
SsiI	CCGC	3 cut(s)	161, 312, 920
SspI	AATATT	1 cut(s)	339
SspMI	CTAG	4 cut(s)	417, 864, 996, 1045
StyI	CCWWGG	2 cut(s)	612, 956
TaaI	ACNGT	3 cut(s)	172, 394, 519
TaiI	ACGT	2 cut(s)	309, 817
TaqI	TCGA	1 cut(s)	222
TatI	WGTACW	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	593
Tru1I	TTAA	5 cut(s)	245, 330, 786, 807, 896
Tru9I	TTAA	5 cut(s)	245, 330, 786, 807, 896
TscAI	CASTG	3 cut(s)	442, 543, 979
TseFI	GTSAC	2 cut(s)	364, 857
TseI	GCWGC	2 cut(s)	440, 952
Tsp45I	GTSAC	2 cut(s)	364, 857
TspDTI	ATGAA	9 cut(s)	17, 105, 412, 440, 651, 932, 960, 1041, 1047
TspGWI	ACGGA	1 cut(s)	744
TspRI	CASTG	3 cut(s)	442, 543, 979
Vha464I	CTTAAG	1 cut(s)	329
VspI	ATTAAT	2 cut(s)	807, 896
XapI	RAATTY	4 cut(s)	188, 427, 572, 606
XceI	RCATGY	3 cut(s)	144, 389, 777
XspI	CTAG	4 cut(s)	417, 864, 996, 1045
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.