Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Forward (+)

1206094 .. 1207377

Gene Structure 1284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G000760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGAAAAAATCTGATGCAATTACAAGTGCAAGCCATGATGTTCGTAATGCTCTTGCTTGCATGACTGAATTGATCAAAATATCCTGTGATGAAGTTGCCCAGGGCTCTGAAATAAGGGAATATCTGACACAAATGGACGCATGTACAACAGACCTCTTACTCTTAGGTATGTTAAACTCTATTCTTGATAAAAGCAAAATTGAAGCGGGGAGGGTAGTTCCCAAGGAGAAGCAAAAAGAAGTGTTTGAAAACTATGTTCAAGTCAAAGAAAAAGCTCATGGAGAAGGAGGTACTGGCTTAGGACCTGGTATTGTTCAGTCTCTGGTACTCTTGATGCACGGAGAAATAGGAATTGTGGACAAGGAGATTGGTGAAAAAGGGACATGCTTCAGGTTTAATGTTCTCCTGAGAGCTATTAATGTGTATGAGGATCATATAAAATTACAACAAGACATTGAATTGGGAGGTGACCCTATTTATGATGACAGAGATCAACAGGTGGGATTAATAGCAGCTATACGCACACCAAATGCAAACTCCAGGTTGACCATAGTTCCTAGTCTGAAGTTCACACCATTTGGAAGCCCCCGGTTGAATGTGTTCCGCAGCACTCCTAGTAATCCTAAGGTAGAGGAATCAGGAATCCATTGTTGTACTGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

221

Amino Acids

24.24

Weight (kDa)

5.45

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	70 - 135	1.1e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	206, 604
AclWI	GGATC	1 cut(s)	438
AcuI	CTGAAG	2 cut(s)	373, 584
AfaI	GTAC	4 cut(s)	145, 292, 327, 655
AgsI	TTSAA	5 cut(s)	203, 248, 260, 458, 595
AjnI	CCWGG	3 cut(s)	99, 304, 539
AluBI	AGCT	3 cut(s)	275, 413, 515
AluI	AGCT	3 cut(s)	275, 413, 515
Alw26I	GTCTC	1 cut(s)	324
AlwI	GGATC	1 cut(s)	438
AlwNI	CAGNNNCTG	1 cut(s)	322
ApeKI	GCWGC	2 cut(s)	512, 606
AseI	ATTAAT	2 cut(s)	417, 506
Asp700I	GAANNNNTTC	1 cut(s)	599
AspS9I	GGNCC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	589
AsuHPI	GGTGA	2 cut(s)	383, 479
AvaII	GGWCC	1 cut(s)	302
AxyI	CCTNAGG	1 cut(s)	624
BanII	GRGCYC	1 cut(s)	107
BbvI	GCAGC	2 cut(s)	524, 618
BciT130I	CCWGG	3 cut(s)	101, 306, 541
BclI	TGATCA	1 cut(s)	72
BcnI	CCSGG	1 cut(s)	589
BcoDI	GTCTC	1 cut(s)	324
BfaI	CTAG	2 cut(s)	558, 615
BisI	GCNGC	2 cut(s)	513, 607
BlsI	GCNGC	2 cut(s)	514, 608
Bme1390I	CCNGG	4 cut(s)	101, 306, 541, 589
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	302
BmrFI	CCNGG	4 cut(s)	101, 306, 541, 589
BmsI	GCATC	2 cut(s)	4, 324
BpmI	CTGGAG	1 cut(s)	523
Bpu10I	CCTNAGC	1 cut(s)	298
BpuMI	CCSGG	1 cut(s)	589
BsaJI	CCNNGG	4 cut(s)	99, 100, 222, 587
Bse1I	ACTGG	1 cut(s)	298
Bse21I	CCTNAGG	1 cut(s)	624
BseBI	CCWGG	3 cut(s)	101, 306, 541
BseDI	CCNNGG	4 cut(s)	99, 100, 222, 587
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	298
BseXI	GCAGC	2 cut(s)	524, 618
BsiSI	CCGG	1 cut(s)	589
BslFI	GGGAC	1 cut(s)	394
BsmAI	GTCTC	1 cut(s)	324
BsmFI	GGGAC	1 cut(s)	394
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp1407I	TGTACA	1 cut(s)	143
Bsp143I	GATC	3 cut(s)	72, 430, 490
BspACI	CCGC	2 cut(s)	206, 604
BspCNI	CTCAG	1 cut(s)	399
BspPI	GGATC	1 cut(s)	438
BsrGI	TGTACA	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	298
BssECI	CCNNGG	4 cut(s)	99, 100, 222, 587
BssMI	GATC	3 cut(s)	72, 430, 490
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	3 cut(s)	101, 306, 541
BstAUI	TGTACA	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	31, 58
BstDEI	CTNAG	4 cut(s)	163, 298, 407, 624
BstEII	GGTNACC	1 cut(s)	467
BstKTI	GATC	3 cut(s)	75, 433, 493
BstMAI	GTCTC	1 cut(s)	324
BstMBI	GATC	3 cut(s)	72, 430, 490
BstNI	CCWGG	3 cut(s)	101, 306, 541
BstNSI	RCATGY	2 cut(s)	144, 387
BstPI	GGTNACC	1 cut(s)	467
BstSCI	CCNGG	4 cut(s)	99, 304, 539, 587
BstV1I	GCAGC	2 cut(s)	524, 618
Bsu36I	CCTNAGG	1 cut(s)	624
Cac8I	GCNNGC	2 cut(s)	31, 58
CaiI	CAGNNNCTG	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	302
CseI	GACGC	1 cut(s)	146
CsiI	ACCWGGT	1 cut(s)	304
Csp6I	GTAC	4 cut(s)	144, 291, 326, 654
CviAII	CATG	5 cut(s)	35, 61, 141, 278, 384
CviJI	RGCY	7 cut(s)	33, 105, 275, 297, 413, 515, 585
CviKI_1	RGCY	7 cut(s)	33, 105, 275, 297, 413, 515, 585
CviQI	GTAC	4 cut(s)	144, 291, 326, 654
DdeI	CTNAG	4 cut(s)	163, 298, 407, 624
DpnI	GATC	3 cut(s)	74, 432, 492
DpnII	GATC	3 cut(s)	72, 430, 490
Eco130I	CCWWGG	1 cut(s)	222
Eco24I	GRGCYC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	2 cut(s)	373, 584
Eco81I	CCTNAGG	1 cut(s)	624
Eco91I	GGTNACC	1 cut(s)	467
EcoO109I	RGGNCCY	1 cut(s)	302
EcoO65I	GGTNACC	1 cut(s)	467
EcoRII	CCWGG	3 cut(s)	99, 304, 539
EcoT14I	CCWWGG	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	5 cut(s)	38, 64, 144, 281, 387
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	5 cut(s)	34, 60, 140, 277, 383
FauI	CCCGC	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	513, 607
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	2 cut(s)	513, 607
FspBI	CTAG	2 cut(s)	558, 615
GluI	GCNGC	2 cut(s)	513, 607
GsuI	CTGGAG	1 cut(s)	523
HapII	CCGG	1 cut(s)	589
HgaI	GACGC	1 cut(s)	146
Hin1II	CATG	5 cut(s)	38, 64, 144, 281, 387
HincII	GTYRAC	1 cut(s)	546
HindII	GTYRAC	1 cut(s)	546
HinfI	GANTC	2 cut(s)	635, 642
HpaII	CCGG	1 cut(s)	589
HphI	GGTGA	2 cut(s)	383, 479
Hpy166II	GTNNAC	3 cut(s)	358, 546, 570
Hpy188I	TCNGA	4 cut(s)	13, 109, 126, 564
Hpy188III	TCNNGA	4 cut(s)	185, 331, 406, 639
Hpy8I	GTNNAC	3 cut(s)	358, 546, 570
HpyAV	CCTTC	1 cut(s)	278
HpyCH4V	TGCA	5 cut(s)	17, 29, 60, 337, 533
HpyF3I	CTNAG	4 cut(s)	163, 298, 407, 624
Hsp92II	CATG	5 cut(s)	38, 64, 144, 281, 387
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	3 cut(s)	72, 430, 490
Lsp1109I	GCAGC	2 cut(s)	524, 618
LweI	GCATC	2 cut(s)	4, 324
MabI	ACCWGGT	1 cut(s)	304
MaeI	CTAG	2 cut(s)	558, 615
MaeIII	GTNAC	1 cut(s)	467
MalI	GATC	3 cut(s)	74, 432, 492
MboI	GATC	3 cut(s)	72, 430, 490
MhlI	GDGCHC	1 cut(s)	107
MluCI	AATT	6 cut(s)	18, 68, 198, 351, 440, 458
MnlI	CCTC	6 cut(s)	164, 204, 281, 421, 458, 625
MroXI	GAANNNNTTC	1 cut(s)	599
MseI	TTAA	5 cut(s)	173, 396, 417, 506, 664
MspI	CCGG	1 cut(s)	589
MspR9I	CCNGG	4 cut(s)	101, 306, 541, 589
MvaI	CCWGG	3 cut(s)	101, 306, 541
NciI	CCSGG	1 cut(s)	589
NdeII	GATC	3 cut(s)	72, 430, 490
NlaIII	CATG	5 cut(s)	38, 64, 144, 281, 387
NmuCI	GTSAC	1 cut(s)	467
NspI	RCATGY	2 cut(s)	144, 387
PasI	CCCWGGG	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	599
PfeI	GAWTC	2 cut(s)	635, 642
PkrI	GCNGC	2 cut(s)	514, 608
PpuMI	RGGWCCY	1 cut(s)	302
PshBI	ATTAAT	2 cut(s)	417, 506
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	3 cut(s)	99, 304, 539
PspEI	GGTNACC	1 cut(s)	467
PspGI	CCWGG	3 cut(s)	99, 304, 539
PspPI	GGNCC	1 cut(s)	302
PspPPI	RGGWCCY	1 cut(s)	302
PstNI	CAGNNNCTG	1 cut(s)	322
RsaI	GTAC	4 cut(s)	145, 292, 327, 655
RsaNI	GTAC	4 cut(s)	144, 291, 326, 654
SaqAI	TTAA	5 cut(s)	173, 396, 417, 506, 664
SatI	GCNGC	2 cut(s)	513, 607
Sau3AI	GATC	3 cut(s)	72, 430, 490
Sau96I	GGNCC	1 cut(s)	302
ScrFI	CCNGG	4 cut(s)	101, 306, 541, 589
SduI	GDGCHC	1 cut(s)	107
SexAI	ACCWGGT	1 cut(s)	304
SfaNI	GCATC	2 cut(s)	4, 324
SinI	GGWCC	1 cut(s)	302
Sse9I	AATT	6 cut(s)	18, 68, 198, 351, 440, 458
SsiI	CCGC	2 cut(s)	206, 604
SspMI	CTAG	2 cut(s)	558, 615
StyD4I	CCNGG	4 cut(s)	99, 304, 539, 587
StyI	CCWWGG	1 cut(s)	222
TasI	AATT	6 cut(s)	18, 68, 198, 351, 440, 458
TatI	WGTACW	2 cut(s)	143, 653
TfiI	GAWTC	2 cut(s)	635, 642
Tru1I	TTAA	5 cut(s)	173, 396, 417, 506, 664
Tru9I	TTAA	5 cut(s)	173, 396, 417, 506, 664
TseFI	GTSAC	1 cut(s)	467
TseI	GCWGC	2 cut(s)	512, 606
Tsp45I	GTSAC	1 cut(s)	467
TspDTI	ATGAA	2 cut(s)	17, 105
TspGWI	ACGGA	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	302
VspI	ATTAAT	2 cut(s)	417, 506
XceI	RCATGY	2 cut(s)	144, 387
XmnI	GAANNNNTTC	1 cut(s)	599
XspI	CTAG	2 cut(s)	558, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.