MD11G1315800.v1.1

Multidrug resistance protein ABC transporter family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000934
Physical Location & Seq
Forward (+)
42762820 .. 42763437
618 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1315800.v1.1.491

Sequence Viewer

Length: 618 bp
ATGGGCAATTCCATCTCCAACAAGCAATCCCATGCCACCGGAAAAGTCATATTATCCAACGGCTCTGTGCATGAGTTCAATCACCCCATCACCGTCGCTGAGCTCATGCTAGAGAACCCGCAGCAAGTCGTCGTGGAATTCGGCTCTGCGGTCCCCGAAAAAAGGGCAACCCCGTTGCCTGCAGACATGCAGCTCGACCTGAAAAAGGTTTACTTAATGCTGCCAATGAAGCGAGGGAAACCAGTGCCGTTGTCATCCGAAGAAATCCGCTGTGTTCTTTTAAGTGCAAATTTGGTTTTACAATCGAGGTCGCCAAGGTTTTTACCTTTGTTCTCTAGAATATGCCTGGCAGGTGATCCCGGGCAAGCTTTCGTGTTGCCAAACAAGGACAGGGATTATAGTATGGAGAGGACGTCGTCCAAGGTCATGAGCAGGTATGTGCCGGAGTTTGATCTGCCGGAAGATTTGGACTCGAGACCAAACTATTTGAGTAGGCAGCTTTCGGGCAAGGGTACTTGGAAACCGAACTTGGATACCATTAAGGAGAAGAAGGTTGACAAGAAGTCTCATTGGTTATTTTCAACTTTAATTAAGAAGAATGCTGTTGATTATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

206

Amino Acids

23.11

Weight (kDa)

9.28

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 1 - 182 3e-28 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 341
AatII GACGTC 1 cut(s) 416
Acc36I ACCTGC 2 cut(s) 341, 423
AciI CCGC 3 cut(s) 119, 149, 268
AclWI GGATC 1 cut(s) 350
AcsI RAATTY 2 cut(s) 137, 289
AcyI GRCGYC 1 cut(s) 413
AfaI GTAC 1 cut(s) 514
AfiI CCNNNNNNNGG 2 cut(s) 162, 205
AgsI TTSAA 2 cut(s) 79, 582
AhdI GACNNNNNGTC 1 cut(s) 562
AjnI CCWGG 1 cut(s) 345
AjuI GAANNNNNNNTTGG 2 cut(s) 512, 544
AluBI AGCT 4 cut(s) 103, 193, 368, 499
AluI AGCT 4 cut(s) 103, 193, 368, 499
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 2 cut(s) 469, 570
AlwI GGATC 1 cut(s) 350
Ama87I CYCGRG 2 cut(s) 359, 472
ApeKI GCWGC 4 cut(s) 121, 190, 220, 496
ApoI RAATTY 2 cut(s) 137, 289
AspS9I GGNCC 1 cut(s) 151
AsuC2I CCSGG 2 cut(s) 360, 361
AsuHPI GGTGA 3 cut(s) 74, 82, 365
AvaI CYCGRG 2 cut(s) 359, 472
AvaII GGWCC 1 cut(s) 151
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 4 cut(s) 133, 202, 207, 508
BccI CCATC 2 cut(s) 20, 95
BceAI ACGGC 2 cut(s) 76, 232
BciT130I CCWGG 1 cut(s) 347
BciVI GTATCC 1 cut(s) 526
BcnI CCSGG 2 cut(s) 360, 361
BcoDI GTCTC 2 cut(s) 469, 570
BfaI CTAG 2 cut(s) 110, 336
BfmI CTRYAG 1 cut(s) 180
BfuAI ACCTGC 2 cut(s) 341, 423
BfuI GTATCC 1 cut(s) 526
BisI GCNGC 4 cut(s) 122, 191, 221, 497
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 4 cut(s) 123, 192, 222, 498
Bme1390I CCNGG 3 cut(s) 347, 360, 361
Bme18I GGWCC 1 cut(s) 151
BmeRI GACNNNNNGTC 1 cut(s) 562
BmeT110I CYCGRG 2 cut(s) 359, 472
BmgT120I GGNCC 1 cut(s) 151
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 3 cut(s) 347, 360, 361
Bpu1102I GCTNAGC 1 cut(s) 99
BpuMI CCSGG 2 cut(s) 360, 361
BsaHI GRCGYC 1 cut(s) 413
BsaI GGTCTC 1 cut(s) 469
BsaJI CCNNGG 3 cut(s) 314, 359, 420
BsaWI WCCGGW 1 cut(s) 38
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 205
Bse1I ACTGG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 3 cut(s) 314, 359, 420
BseGI GGATG 1 cut(s) 254
BseLI CCNNNNNNNGG 2 cut(s) 162, 205
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 242
BseXI GCAGC 4 cut(s) 133, 202, 207, 508
BsiHKAI GWGCWC 1 cut(s) 105
BsiHKCI CYCGRG 2 cut(s) 359, 472
BsiSI CCGG 4 cut(s) 39, 360, 443, 458
BslFI GGGAC 1 cut(s) 137
BslI CCNNNNNNNGG 2 cut(s) 162, 205
BsmAI GTCTC 2 cut(s) 469, 570
BsmFI GGGAC 1 cut(s) 137
BsmI GAATGC 1 cut(s) 604
Bso31I GGTCTC 1 cut(s) 469
BsoBI CYCGRG 2 cut(s) 359, 472
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 2 cut(s) 355, 451
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 3 cut(s) 119, 149, 268
BspCNI CTCAG 1 cut(s) 91
BspHI TCATGA 1 cut(s) 426
BspLI GGNNCC 1 cut(s) 153
BspMAI CTGCAG 1 cut(s) 184
BspMI ACCTGC 2 cut(s) 341, 423
BspPI GGATC 1 cut(s) 350
BspTNI GGTCTC 1 cut(s) 469
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 3 cut(s) 314, 359, 420
BssMI GATC 2 cut(s) 355, 451
BssNI GRCGYC 1 cut(s) 413
BssT1I CCWWGG 2 cut(s) 314, 420
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 1 cut(s) 94
BstACI GRCGYC 1 cut(s) 413
BstC8I GCNNGC 2 cut(s) 180, 366
BstDEI CTNAG 1 cut(s) 99
BstENI CCTNNNNNAGG 1 cut(s) 203
BstF5I GGATG 1 cut(s) 254
BstKTI GATC 2 cut(s) 358, 454
BstMAI GTCTC 2 cut(s) 469, 570
BstMBI GATC 2 cut(s) 355, 451
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstNI CCWGG 1 cut(s) 347
BstNSI RCATGY 1 cut(s) 190
BstSCI CCNGG 3 cut(s) 345, 358, 359
BstSFI CTRYAG 1 cut(s) 180
BstV1I GCAGC 4 cut(s) 133, 202, 207, 508
BsuI GTATCC 1 cut(s) 526
BtsCI GGATG 1 cut(s) 254
BtsIMutI CAGTG 1 cut(s) 249
BveI ACCTGC 2 cut(s) 341, 423
Cac8I GCNNGC 2 cut(s) 180, 366
CciI TCATGA 1 cut(s) 426
Cfr13I GGNCC 1 cut(s) 151
Cfr9I CCCGGG 1 cut(s) 359
Csp6I GTAC 1 cut(s) 513
CviAII CATG 5 cut(s) 32, 71, 106, 187, 427
CviJI RGCY 6 cut(s) 63, 103, 144, 193, 368, 499
CviKI_1 RGCY 6 cut(s) 63, 103, 144, 193, 368, 499
CviQI GTAC 1 cut(s) 513
DdeI CTNAG 1 cut(s) 99
DpnI GATC 2 cut(s) 357, 453
DpnII GATC 2 cut(s) 355, 451
DriI GACNNNNNGTC 1 cut(s) 562
Eam1105I GACNNNNNGTC 1 cut(s) 562
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 2 cut(s) 314, 420
Eco24I GRGCYC 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 103
Eco88I CYCGRG 2 cut(s) 359, 472
EcoICRI GAGCTC 1 cut(s) 103
EcoNI CCTNNNNNAGG 1 cut(s) 203
EcoRI GAATTC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 345
EcoT14I CCWWGG 2 cut(s) 314, 420
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 2 cut(s) 314, 420
FaeI CATG 5 cut(s) 35, 74, 109, 190, 430
FalI AAGNNNNNCTT 2 cut(s) 197, 229
FaqI GGGAC 1 cut(s) 137
FatI CATG 5 cut(s) 31, 70, 105, 186, 426
FauI CCCGC 1 cut(s) 126
Fnu4HI GCNGC 4 cut(s) 122, 191, 221, 497
FokI GGATG 1 cut(s) 241
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 4 cut(s) 122, 191, 221, 497
FspBI CTAG 2 cut(s) 110, 336
GluI GCNGC 4 cut(s) 122, 191, 221, 497
HapII CCGG 4 cut(s) 39, 360, 443, 458
Hin1I GRCGYC 1 cut(s) 413
Hin1II CATG 5 cut(s) 35, 74, 109, 190, 430
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HindIII AAGCTT 1 cut(s) 366
HinfI GANTC 1 cut(s) 470
HpaII CCGG 4 cut(s) 39, 360, 443, 458
HphI GGTGA 3 cut(s) 74, 82, 365
Hpy166II GTNNAC 2 cut(s) 211, 556
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 3 cut(s) 336, 427, 474
Hpy8I GTNNAC 2 cut(s) 211, 556
Hpy99I CGWCG 3 cut(s) 98, 134, 418
HpyAV CCTTC 1 cut(s) 544
HpyCH4III ACNGT 1 cut(s) 94
HpyCH4IV ACGT 1 cut(s) 413
HpyCH4V TGCA 4 cut(s) 70, 182, 190, 287
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 1 cut(s) 99
HpySE526I ACGT 1 cut(s) 413
Hsp92I GRCGYC 1 cut(s) 413
Hsp92II CATG 5 cut(s) 35, 74, 109, 190, 430
Kzo9I GATC 2 cut(s) 355, 451
Lsp1109I GCAGC 4 cut(s) 133, 202, 207, 508
MaeI CTAG 2 cut(s) 110, 336
MaeII ACGT 1 cut(s) 413
MalI GATC 2 cut(s) 357, 453
MboI GATC 2 cut(s) 355, 451
MboII GAAGA 4 cut(s) 272, 473, 559, 607
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 4 cut(s) 7, 137, 289, 588
MlyI GAGTC 1 cut(s) 464
MmeI TCCRAC 2 cut(s) 42, 81
MnlI CCTC 3 cut(s) 227, 300, 402
MseI TTAA 5 cut(s) 215, 281, 540, 587, 591
MspA1I CMGCKG 1 cut(s) 270
MspI CCGG 4 cut(s) 39, 360, 443, 458
MspR9I CCNGG 3 cut(s) 347, 360, 361
Mva1269I GAATGC 1 cut(s) 604
MvaI CCWGG 1 cut(s) 347
MwoI GCNNNNNNNGC 1 cut(s) 229
NciI CCSGG 2 cut(s) 360, 361
NdeII GATC 2 cut(s) 355, 451
NlaIII CATG 5 cut(s) 35, 74, 109, 190, 430
NlaIV GGNNCC 1 cut(s) 153
NspI RCATGY 1 cut(s) 190
PacI TTAATTAA 1 cut(s) 591
PaeR7I CTCGAG 1 cut(s) 472
PagI TCATGA 1 cut(s) 426
PaqCI CACCTGC 1 cut(s) 341
PctI GAATGC 1 cut(s) 604
PflFI GACNNNGTC 1 cut(s) 415
PkrI GCNGC 4 cut(s) 123, 192, 222, 498
PleI GAGTC 1 cut(s) 464
PpsI GAGTC 1 cut(s) 464
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 345
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 151
PstI CTGCAG 1 cut(s) 184
PsyI GACNNNGTC 1 cut(s) 415
RsaI GTAC 1 cut(s) 514
RsaNI GTAC 1 cut(s) 513
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 5 cut(s) 215, 281, 540, 587, 591
SatI GCNGC 4 cut(s) 122, 191, 221, 497
Sau3AI GATC 2 cut(s) 355, 451
Sau96I GGNCC 1 cut(s) 151
SchI GAGTC 1 cut(s) 464
ScrFI CCNGG 3 cut(s) 347, 360, 361
SduI GDGCHC 1 cut(s) 105
SfcI CTRYAG 1 cut(s) 180
Sfr274I CTCGAG 1 cut(s) 472
SinI GGWCC 1 cut(s) 151
SlaI CTCGAG 1 cut(s) 472
SmaI CCCGGG 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 472
SmoI CTYRAG 1 cut(s) 472
Sse9I AATT 4 cut(s) 7, 137, 289, 588
SsiI CCGC 3 cut(s) 119, 149, 268
SspMI CTAG 2 cut(s) 110, 336
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 3 cut(s) 345, 358, 359
StyI CCWWGG 2 cut(s) 314, 420
TaaI ACNGT 1 cut(s) 94
TaiI ACGT 1 cut(s) 416
TaqI TCGA 3 cut(s) 195, 305, 473
TasI AATT 4 cut(s) 7, 137, 289, 588
Tru1I TTAA 5 cut(s) 215, 281, 540, 587, 591
Tru9I TTAA 5 cut(s) 215, 281, 540, 587, 591
TscAI CASTG 1 cut(s) 249
TseI GCWGC 4 cut(s) 121, 190, 220, 496
TspDTI ATGAA 1 cut(s) 242
TspMI CCCGGG 1 cut(s) 359
TspRI CASTG 1 cut(s) 249
Tth111I GACNNNGTC 1 cut(s) 415
VpaK11BI GGWCC 1 cut(s) 151
XagI CCTNNNNNAGG 1 cut(s) 203
XapI RAATTY 2 cut(s) 137, 289
XbaI TCTAGA 1 cut(s) 335
XceI RCATGY 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 472
XmaI CCCGGG 1 cut(s) 359
XspI CTAG 2 cut(s) 110, 336
ZraI GACGTC 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.