Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Reverse (-)

65930251 .. 65934913

Gene Structure 4663 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G042250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2655 bp

ATGCAAAGAAAAACTAACAAAACAAAATATGAGATCATATATCTACTCTTTAGTGTTTCAAGACCAAGATCAATGAAGCTCCCCTCGTTGACAGTGTTCCAGCATGCTTTTGTCATCTTTTTGGTTACAAGTGTGCTGGTACTTTCTAGTTTATTGATAGGAATCATCAAACGTATCGAGCATAATGTCTATGTACTGGCTCCCAGGGAGAGAGAGTTAATGAACTTTGTTCATAACCATTGCAGTGAGTCACTTATCCTCATTTTTGTGATGATTGCTACAATGAGTGTCTTCATCTTCAGTTACTCTTTCATAATGCTAACTGTTGCGAAACGGGAAATGCATCGTTATGCCACACTCATAGAACAAAGGGAGAAAACTGAGCAAGCTGAGAGAAAGAGCATGAGGAAAAGTGATGCATTTGCTAAAGCAAGCCATGACATTCGGGCTGCGCTAGCTGGAATTATTAGTTGGATCAACTTCTGTAAAGATGATATTCATGATGCGCTTGATCTTCATGCCACAAATGCTGGAACTACCCGGCATTCTGAAATAGAGACAATCTTAACAAAAATAGATTCCAACTTAAAAAGACTGGATGTTCATGCAGAAGATCTTTTAGGTATATTGAACTCTGTTCTTGACAAAAGCAAAATTGAAGCAGGTAAGATGGTACTTGAAAATGAAGAATTTGATGTGGCTCAGCTTGTTGAAGAGGTAGTGGATTTGTTTCTTCCAACTGCATCAATGAAGGGATTAGATGTGGTGTTGGATCCTTGTGATGGATCTGTTATAAAGTTTGCACGTGTGAAAGGTGACAGGGGAAGGCTTAAGCAGATACTAAACAACTTACTAAGCAATGCTGTTAAATTTACGTCAGAAGGGCAAATCACAATCCGCACCTGGGTCCGAAAACCAAGTTTTAAGAAGTCAATAACTGCTTCTCGTGAGCGGACTAATGGTTTCTTGAAACAGTTCTTATGCTTGTTTAATTACAAGAACATGAACAATGATGACAAGGAAGTAGTGGATGGTTCTCAACGTGATCCAAATGCTTTGGAATTTGTTTTTGAGGTGGATGATACTGGTAGGGGAATTCTCAAGGAGAGGCAAAAATCGGTGTTCGAGGACTATGTCCAAGTCAAAGAAAAAGCACTTGGAGAAGGTGGTACCGGCTTAGGACTGGGAATTGTTCAATCTCTGGTGCGTTTGATGCATGGAGAAATAGGAATTGTGGACAAGGAGATTGGGGAAAGAGGGACATGCTTCAGGTTCAATGTACTGCTAAGCACTATTAATACCTGTGAGGATAGCATAAAAGTAGAACCAGACATTGAAATGGGAATTAGTGACTTAAACCCTAGTCCCGGGCCGACTGTCAATCAAACACCAATTGCAAGCCCCAAGTTGAACATTCGCAGTACCACCGCGAGTCCTAAGGTCGAGGGATCCTATGTTGTAATGCTGATTAAAAATGCAGAGCGCAGGAGAGTTATACAGAAGTTTATGGAGAGACTTGGGATAAAAGTATCAGTAGCAGAACGATGGGAACAACTTGCTCGTACTCTCCAGAACATAAAAAACAAGAAGATTTACCATTCTCAACATAATTCCATATCAGGAATACCCGATTTGGGTCTGCAGGATTGCTTGATCAAATCCGCCTCATGCAACTCCAACTTCAGCTTTAATAGAGCAAAGGAAGCGTCTTTGATGAGTTCCATGGATGGATCAACAGATAACAACATTCTTTCTCTCTTTCATAAGAAGAGTACTAGTAGTAATCTTCGTGGAGCATATGATCGCTTCGTAATGCTACTTATTGATACTACAGGTGGACCACTCCCAGAACTATGCAAGATTGTGAATGATTTCAAAAGAGGCCTCCAAAATGGTTGGTACTGCAAGGTTGTTTGGTTATCAAGTCCATTTACTCATAGCGATCTAAGCTTCAACAGAGATATGTTGGATGGCGATGATGTTATCAAACACAAGCCTCTACATGGTACTTGTCTATATGAAGTTGTAAGACTTCTTCCAGAGTGCGGGGGCGCATTACCAAAAAGATCATCAGGTCAGGTTGCATCAAAACTATACATTCATACCGATGATGACAACTCCTCTGACCAAATAGTACAAGAGAGTAATTCACCGACTCTTCAACATCATCAACCTCCTAACAATATTGGCTCCAAAGCAGCAAGTCAATCAGCCCCAGCAGACCATGGCAACAAACCCTTAACTGGGAAGAAAATCTTGGTTGCAGAGGACACAGCATCGTTACGCATGGTGGCTATGCAGGCTTTGTCACGATTGGGTGCAACTGTGAAGCTTTGTGAAAATGGAAGAGAAGCTTTGGATCTAATTCGCAATGATCTAGTCAATCAAAGGAAACATGTCTATGACTATATACTGATGGATTGCCAGATGCCAGAAATGGATGGGTTCGAAGCGACCAGGGAAATCAGGAAAGAGGAGAAATCTTACAATGTTCGCATTCCGATCATCGCATTAACAGCTCATGCAAAAGGAGGCGAGGAAACAAGAAGGATGATGGAGGCTGGTATGGACGAACATTTAGAGAAAACCTCCATAGTGACTAGTCTAGGGGAAACACTAGCAAAGATTGATCATAGTACGAAAGCAACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

884

Amino Acids

99.05

Weight (kDa)

8.33

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	354 - 427	3.5e-12	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Response_reg	PF00072	752 - 864	2.8e-19	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	794
Acc36I	ACCTGC	1 cut(s)	653
Acc65I	GGTACC	1 cut(s)	1169
AccB1I	GGYRCC	1 cut(s)	1169
AccBSI	CCGCTC	1 cut(s)	952
AccII	CGCG	1 cut(s)	1430
AciI	CCGC	5 cut(s)	898, 952, 1428, 1662, 2046
AclWI	GGATC	9 cut(s)	482, 767, 780, 793, 1040, 1443, 1456, 1738, 2367
AcsI	RAATTY	4 cut(s)	689, 869, 1061, 1095
AcuI	CTGAAG	3 cut(s)	283, 1252, 1666
AcvI	CACGTG	1 cut(s)	806
AfiI	CCNNNNNNNGG	8 cut(s)	782, 904, 1367, 1634, 2003, 2045, 2243, 2244
AflII	CTTAAG	1 cut(s)	830
AflIII	ACRYGT	2 cut(s)	805, 2395
AhlI	ACTAGT	2 cut(s)	1775, 2600
AjnI	CCWGG	3 cut(s)	203, 902, 2456
AjuI	GAANNNNNNNTTGG	6 cut(s)	454, 486, 1140, 1172, 2240, 2272
Alw26I	GTCTC	2 cut(s)	551, 1507
AlwI	GGATC	9 cut(s)	482, 767, 780, 793, 1040, 1443, 1456, 1738, 2367
Ama87I	CYCGRG	1 cut(s)	1367
AoxI	GGCC	2 cut(s)	1370, 1882
ApeKI	GCWGC	2 cut(s)	449, 2198
ApoI	RAATTY	4 cut(s)	689, 869, 1061, 1095
ArsI	GACNNNNNNTTYG	2 cut(s)	1691, 1723
AseI	ATTAAT	1 cut(s)	1296
Asp700I	GAANNNNTTC	2 cut(s)	974, 1871
Asp718I	GGTACC	1 cut(s)	1169
AspLEI	GCGC	4 cut(s)	454, 508, 1485, 2054
AspS9I	GGNCC	3 cut(s)	907, 1370, 1838
AsuC2I	CCSGG	3 cut(s)	541, 1368, 1369
AsuHPI	GGTGA	2 cut(s)	827, 2142
AsuII	TTCGAA	1 cut(s)	2448
AsuNHI	GCTAGC	1 cut(s)	454
AvaI	CYCGRG	1 cut(s)	1367
AvaII	GGWCC	2 cut(s)	907, 1838
AxyI	CCTNAGG	1 cut(s)	1437
BamHI	GGATCC	2 cut(s)	772, 1448
BanI	GGYRCC	1 cut(s)	1169
BarI	GAAGNNNNNNTAC	2 cut(s)	2019, 2051
BauI	CACGAG	1 cut(s)	945
BbrPI	CACGTG	1 cut(s)	806
BbsI	GAAGAC	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	436, 2210
BccI	CCATC	9 cut(s)	664, 776, 1025, 1539, 1721, 1964, 2410, 2435, 2548
BciT130I	CCWGG	3 cut(s)	205, 904, 2458
BclI	TGATCA	2 cut(s)	1653, 2629
BcnI	CCSGG	3 cut(s)	541, 1368, 1369
BcoDI	GTCTC	2 cut(s)	551, 1507
BcuI	ACTAGT	2 cut(s)	1775, 2600
BfmI	CTRYAG	2 cut(s)	1640, 1830
BfrI	CTTAAG	1 cut(s)	830
BfuAI	ACCTGC	1 cut(s)	653
BglII	AGATCT	1 cut(s)	613
BisI	GCNGC	2 cut(s)	450, 2199
BlpI	GCTNAGC	2 cut(s)	702, 1286
BlsI	GCNGC	2 cut(s)	451, 2200
BmcAI	AGTACT	1 cut(s)	1774
Bme1390I	CCNGG	6 cut(s)	205, 541, 904, 1368, 1369, 2458
Bme18I	GGWCC	2 cut(s)	907, 1838
BmeT110I	CYCGRG	1 cut(s)	1367
BmgT120I	GGNCC	3 cut(s)	907, 1370, 1838
BmiI	GGNNCC	6 cut(s)	201, 774, 908, 1171, 1450, 2191
BmrFI	CCNGG	6 cut(s)	205, 541, 904, 1368, 1369, 2458
BmrI	ACTGGG	2 cut(s)	1193, 2253
BmsI	GCATC	8 cut(s)	352, 406, 493, 752, 1203, 2093, 2285, 2418
BmtI	GCTAGC	1 cut(s)	458
BmuI	ACTGGG	2 cut(s)	1193, 2253
BpiI	GAAGAC	1 cut(s)	283
BplI	GAGNNNNNCTC	2 cut(s)	2573, 2605
BpmI	CTGGAG	1 cut(s)	1553
Bpu10I	CCTNAGC	1 cut(s)	1177
Bpu1102I	GCTNAGC	2 cut(s)	702, 1286
Bpu14I	TTCGAA	1 cut(s)	2448
BpuEI	CTTGAG	1 cut(s)	1085
BpuMI	CCSGG	3 cut(s)	541, 1368, 1369
BsaAI	YACGTR	1 cut(s)	806
BsaBI	GATNNNNATC	1 cut(s)	161
BsaJI	CCNNGG	7 cut(s)	203, 204, 903, 1367, 1722, 2224, 2457
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	8 cut(s)	782, 904, 1367, 1634, 2003, 2045, 2243, 2244
Bse118I	RCCGGY	1 cut(s)	1172
Bse1I	ACTGG	5 cut(s)	201, 600, 1090, 1188, 2248
Bse21I	CCTNAGG	1 cut(s)	1437
Bse3DI	GCAATG	3 cut(s)	238, 865, 2377
Bse8I	GATNNNNATC	1 cut(s)	161
BseBI	CCWGG	3 cut(s)	205, 904, 2458
BseDI	CCNNGG	7 cut(s)	203, 204, 903, 1367, 1722, 2224, 2457
BseGI	GGATG	7 cut(s)	604, 1036, 1084, 1732, 1975, 2446, 2556
BseJI	GATNNNNATC	1 cut(s)	161
BseLI	CCNNNNNNNGG	8 cut(s)	782, 904, 1367, 1634, 2003, 2045, 2243, 2244
BseMI	GCAATG	3 cut(s)	238, 865, 2377
BseMII	CTCAG	3 cut(s)	372, 381, 716
BseNI	ACTGG	5 cut(s)	201, 600, 1090, 1188, 2248
BseRI	GAGGAG	2 cut(s)	2110, 2489
BseXI	GCAGC	2 cut(s)	436, 2210
BseYI	CCCAGC	1 cut(s)	2215
Bsh1236I	CGCG	1 cut(s)	1430
BshFI	GGCC	2 cut(s)	1372, 1884
BshNI	GGYRCC	1 cut(s)	1169
BsiHKCI	CYCGRG	1 cut(s)	1367
BsiSI	CCGG	3 cut(s)	541, 1173, 1368
BslFI	GGGAC	2 cut(s)	1273, 1350
BslI	CCNNNNNNNGG	8 cut(s)	782, 904, 1367, 1634, 2003, 2045, 2243, 2244
BsmAI	GTCTC	2 cut(s)	551, 1507
BsmFI	GGGAC	2 cut(s)	1273, 1350
BsmI	GAATGC	2 cut(s)	544, 2496
BsnI	GGCC	2 cut(s)	1372, 1884
BsoBI	CYCGRG	1 cut(s)	1367
Bsp119I	TTCGAA	1 cut(s)	2448
Bsp1720I	GCTNAGC	2 cut(s)	702, 1286
Bsp19I	CCATGG	2 cut(s)	1722, 2224
BspACI	CCGC	5 cut(s)	898, 952, 1428, 1662, 2046
BspANI	GGCC	2 cut(s)	1372, 1884
BspCNI	CTCAG	3 cut(s)	373, 382, 715
BspFNI	CGCG	1 cut(s)	1430
BspHI	TCATGA	1 cut(s)	499
BspLI	GGNNCC	6 cut(s)	201, 774, 908, 1171, 1450, 2191
BspMAI	CTGCAG	1 cut(s)	1644
BspMI	ACCTGC	1 cut(s)	653
BspOI	GCTAGC	1 cut(s)	458
BspPI	GGATC	9 cut(s)	482, 767, 780, 793, 1040, 1443, 1456, 1738, 2367
BspT104I	TTCGAA	1 cut(s)	2448
BspT107I	GGYRCC	1 cut(s)	1169
BspTI	CTTAAG	1 cut(s)	830
BsrBI	CCGCTC	1 cut(s)	952
BsrDI	GCAATG	3 cut(s)	238, 865, 2377
BsrFI	RCCGGY	1 cut(s)	1172
BsrI	ACTGG	5 cut(s)	201, 600, 1090, 1188, 2248
BssAI	RCCGGY	1 cut(s)	1172
BssECI	CCNNGG	7 cut(s)	203, 204, 903, 1367, 1722, 2224, 2457
BssSI	CACGAG	1 cut(s)	945
BssT1I	CCWWGG	2 cut(s)	1722, 2224
Bst2BI	CACGAG	1 cut(s)	945
Bst2UI	CCWGG	3 cut(s)	205, 904, 2458
Bst4CI	ACNGT	5 cut(s)	94, 325, 975, 1378, 2326
Bst6I	CTCTTC	4 cut(s)	708, 1763, 2163, 2341
BstAFI	CTTAAG	1 cut(s)	830
BstBAI	YACGTR	1 cut(s)	806
BstBI	TTCGAA	1 cut(s)	2448
BstC8I	GCNNGC	6 cut(s)	105, 387, 433, 456, 1399, 2301
BstDEI	CTNAG	8 cut(s)	381, 390, 702, 854, 1177, 1286, 1437, 1946
BstDSI	CCRYGG	2 cut(s)	1722, 2224
BstF5I	GGATG	7 cut(s)	604, 1036, 1084, 1732, 1975, 2446, 2556
BstFNI	CGCG	1 cut(s)	1430
BstHHI	GCGC	4 cut(s)	454, 508, 1485, 2054
BstMAI	GTCTC	2 cut(s)	551, 1507
BstMWI	GCNNNNNNNGC	7 cut(s)	455, 527, 1213, 1703, 1947, 2300, 2516
BstNI	CCWGG	3 cut(s)	205, 904, 2458
BstNSI	RCATGY	3 cut(s)	107, 1266, 2399
BstSCI	CCNGG	6 cut(s)	203, 539, 902, 1366, 1367, 2456
BstSFI	CTRYAG	2 cut(s)	1640, 1830
BstUI	CGCG	1 cut(s)	1430
BstV1I	GCAGC	2 cut(s)	436, 2210
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	5 cut(s)	613, 772, 785, 1448, 2359
BstYI	RGATCY	5 cut(s)	613, 772, 785, 1448, 2359
Bsu36I	CCTNAGG	1 cut(s)	1437
BsuRI	GGCC	2 cut(s)	1372, 1884
BtgI	CCRYGG	2 cut(s)	1722, 2224
BtgZI	GCGATG	2 cut(s)	1989, 2491
BtsCI	GGATG	7 cut(s)	604, 1036, 1084, 1732, 1975, 2446, 2556
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	2 cut(s)	99, 250
BveI	ACCTGC	1 cut(s)	653
Cac8I	GCNNGC	6 cut(s)	105, 387, 433, 456, 1399, 2301
CciI	TCATGA	1 cut(s)	499
CfoI	GCGC	4 cut(s)	454, 508, 1485, 2054
Cfr10I	RCCGGY	1 cut(s)	1172
Cfr13I	GGNCC	3 cut(s)	907, 1370, 1838
Cfr9I	CCCGGG	1 cut(s)	1367
CseI	GACGC	1 cut(s)	1695
DdeI	CTNAG	8 cut(s)	381, 390, 702, 854, 1177, 1286, 1437, 1946
Eam1104I	CTCTTC	4 cut(s)	708, 1763, 2163, 2341
EarI	CTCTTC	4 cut(s)	708, 1763, 2163, 2341
EciI	GGCGGA	1 cut(s)	1651
Eco130I	CCWWGG	2 cut(s)	1722, 2224
Eco147I	AGGCCT	1 cut(s)	1884
Eco47I	GGWCC	2 cut(s)	907, 1838
Eco57I	CTGAAG	3 cut(s)	283, 1252, 1666
Eco72I	CACGTG	1 cut(s)	806
Eco81I	CCTNAGG	1 cut(s)	1437
Eco88I	CYCGRG	1 cut(s)	1367
EcoRI	GAATTC	1 cut(s)	1095
EcoRII	CCWGG	3 cut(s)	203, 902, 2456
EcoT14I	CCWWGG	2 cut(s)	1722, 2224
EcoT22I	ATGCAT	3 cut(s)	345, 421, 1218
ErhI	CCWWGG	2 cut(s)	1722, 2224
FalI	AAGNNNNNCTT	4 cut(s)	2240, 2272, 2338, 2370
FaqI	GGGAC	2 cut(s)	1273, 1350
FauI	CCCGC	1 cut(s)	2039
FauNDI	CATATG	1 cut(s)	1798
FbaI	TGATCA	2 cut(s)	1653, 2629
Fnu4HI	GCNGC	2 cut(s)	450, 2199
FokI	GGATG	7 cut(s)	611, 1043, 1091, 1739, 1982, 2453, 2563
Fsp4HI	GCNGC	2 cut(s)	450, 2199
GlaI	GCGC	4 cut(s)	453, 507, 1484, 2053
GluI	GCNGC	2 cut(s)	450, 2199
GsaI	CCCAGC	1 cut(s)	2219
GsuI	CTGGAG	1 cut(s)	1553
HaeIII	GGCC	2 cut(s)	1372, 1884
HapII	CCGG	3 cut(s)	541, 1173, 1368
HgaI	GACGC	1 cut(s)	1695
HhaI	GCGC	4 cut(s)	454, 508, 1485, 2054
Hin6I	GCGC	4 cut(s)	452, 506, 1483, 2052
HinP1I	GCGC	4 cut(s)	452, 506, 1483, 2052
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HindIII	AAGCTT	3 cut(s)	1948, 2330, 2352
HinfI	GANTC	5 cut(s)	162, 248, 578, 1432, 2155
HpaII	CCGG	3 cut(s)	541, 1173, 1368
HphI	GGTGA	2 cut(s)	827, 2142
Hpy166II	GTNNAC	3 cut(s)	90, 1237, 1838
Hpy188I	TCNGA	5 cut(s)	550, 880, 911, 2125, 2502
Hpy8I	GTNNAC	3 cut(s)	90, 1237, 1838
HpyAV	CCTTC	5 cut(s)	745, 819, 875, 1157, 2541
HpyCH4III	ACNGT	5 cut(s)	94, 325, 975, 1378, 2326
HpyCH4IV	ACGT	4 cut(s)	172, 805, 875, 1042
HpyF10VI	GCNNNNNNNGC	7 cut(s)	455, 527, 1213, 1703, 1947, 2300, 2516
HpyF3I	CTNAG	8 cut(s)	381, 390, 702, 854, 1177, 1286, 1437, 1946
HpySE526I	ACGT	4 cut(s)	172, 805, 875, 1042
HspAI	GCGC	4 cut(s)	452, 506, 1483, 2052
KpnI	GGTACC	1 cut(s)	1173
Ksp22I	TGATCA	2 cut(s)	1653, 2629
LmnI	GCTCC	4 cut(s)	84, 205, 1793, 2195
Lsp1109I	GCAGC	2 cut(s)	436, 2210
LweI	GCATC	8 cut(s)	352, 406, 493, 752, 1203, 2093, 2285, 2418
MaeII	ACGT	4 cut(s)	172, 805, 875, 1042
MaeIII	GTNAC	8 cut(s)	124, 249, 302, 815, 1349, 2280, 2307, 2596
MbiI	CCGCTC	1 cut(s)	952
MfeI	CAATTG	1 cut(s)	1392
MflI	RGATCY	5 cut(s)	613, 772, 785, 1448, 2359
MlyI	GAGTC	3 cut(s)	257, 1441, 2149
MmeI	TCCRAC	6 cut(s)	452, 606, 750, 761, 1701, 1947
Mph1103I	ATGCAT	3 cut(s)	345, 421, 1218
MroXI	GAANNNNTTC	2 cut(s)	974, 1871
MslI	CAYNNNNRTG	6 cut(s)	243, 266, 348, 1337, 2106, 2400
MspCI	CTTAAG	1 cut(s)	830
MspI	CCGG	3 cut(s)	541, 1173, 1368
MspR9I	CCNGG	6 cut(s)	205, 541, 904, 1368, 1369, 2458
MunI	CAATTG	1 cut(s)	1392
Mva1269I	GAATGC	2 cut(s)	544, 2496
MvaI	CCWGG	3 cut(s)	205, 904, 2458
MvnI	CGCG	1 cut(s)	1430
MwoI	GCNNNNNNNGC	7 cut(s)	455, 527, 1213, 1703, 1947, 2300, 2516
NciI	CCSGG	3 cut(s)	541, 1368, 1369
NcoI	CCATGG	2 cut(s)	1722, 2224
NdeI	CATATG	1 cut(s)	1798
NheI	GCTAGC	1 cut(s)	454
NlaIV	GGNNCC	6 cut(s)	201, 774, 908, 1171, 1450, 2191
NmuCI	GTSAC	5 cut(s)	249, 815, 1349, 2307, 2596
NsiI	ATGCAT	3 cut(s)	345, 421, 1218
NspI	RCATGY	3 cut(s)	107, 1266, 2399
NspV	TTCGAA	1 cut(s)	2448
PaeI	GCATGC	1 cut(s)	107
PagI	TCATGA	1 cut(s)	499
PasI	CCCWGGG	1 cut(s)	204
PceI	AGGCCT	1 cut(s)	1884
PciI	ACATGT	1 cut(s)	2395
PctI	GAATGC	2 cut(s)	544, 2496
PdmI	GAANNNNTTC	2 cut(s)	974, 1871
PfeI	GAWTC	2 cut(s)	162, 578
PflFI	GACNNNGTC	1 cut(s)	1133
PkrI	GCNGC	2 cut(s)	451, 2200
PleI	GAGTC	3 cut(s)	256, 1440, 2149
PmaCI	CACGTG	1 cut(s)	806
PmlI	CACGTG	1 cut(s)	806
PpsI	GAGTC	3 cut(s)	256, 1440, 2149
Ppu21I	YACGTR	1 cut(s)	806
PscI	ACATGT	1 cut(s)	2395
PshBI	ATTAAT	1 cut(s)	1296
PsiI	TTATAA	1 cut(s)	794
Psp6I	CCWGG	3 cut(s)	203, 902, 2456
PspCI	CACGTG	1 cut(s)	806
PspFI	CCCAGC	1 cut(s)	2215
PspGI	CCWGG	3 cut(s)	203, 902, 2456
PspN4I	GGNNCC	6 cut(s)	201, 774, 908, 1171, 1450, 2191
PspPI	GGNCC	3 cut(s)	907, 1370, 1838
PstI	CTGCAG	1 cut(s)	1644
PsuI	RGATCY	5 cut(s)	613, 772, 785, 1448, 2359
PsyI	GACNNNGTC	1 cut(s)	1133
RseI	CAYNNNNRTG	6 cut(s)	243, 266, 348, 1337, 2106, 2400
SatI	GCNGC	2 cut(s)	450, 2199
Sau96I	GGNCC	3 cut(s)	907, 1370, 1838
ScaI	AGTACT	1 cut(s)	1774
SchI	GAGTC	3 cut(s)	257, 1441, 2149
ScrFI	CCNGG	6 cut(s)	205, 541, 904, 1368, 1369, 2458
SfaNI	GCATC	8 cut(s)	352, 406, 493, 752, 1203, 2093, 2285, 2418
SfcI	CTRYAG	2 cut(s)	1640, 1830
SfuI	TTCGAA	1 cut(s)	2448
SinI	GGWCC	2 cut(s)	907, 1838
SmaI	CCCGGG	1 cut(s)	1369
SmiMI	CAYNNNNRTG	6 cut(s)	243, 266, 348, 1337, 2106, 2400
SmlI	CTYRAG	2 cut(s)	830, 1100
SmoI	CTYRAG	2 cut(s)	830, 1100
SpeI	ACTAGT	2 cut(s)	1775, 2600
SphI	GCATGC	1 cut(s)	107
SseBI	AGGCCT	1 cut(s)	1884
SsiI	CCGC	5 cut(s)	898, 952, 1428, 1662, 2046
SspI	AATATT	1 cut(s)	2185
StuI	AGGCCT	1 cut(s)	1884
StyD4I	CCNGG	6 cut(s)	203, 539, 902, 1366, 1367, 2456
StyI	CCWWGG	2 cut(s)	1722, 2224
TaaI	ACNGT	5 cut(s)	94, 325, 975, 1378, 2326
TaiI	ACGT	4 cut(s)	175, 808, 878, 1045
TaqI	TCGA	4 cut(s)	177, 1125, 1443, 2448
TatI	WGTACW	4 cut(s)	193, 1279, 1772, 2134
TfiI	GAWTC	2 cut(s)	162, 578
TscAI	CASTG	2 cut(s)	99, 250
TseFI	GTSAC	5 cut(s)	249, 815, 1349, 2307, 2596
TseI	GCWGC	2 cut(s)	449, 2198
Tsp45I	GTSAC	5 cut(s)	249, 815, 1349, 2307, 2596
TspMI	CCCGGG	1 cut(s)	1367
TspRI	CASTG	2 cut(s)	99, 250
Tth111I	GACNNNGTC	1 cut(s)	1133
Vha464I	CTTAAG	1 cut(s)	830
VpaK11BI	GGWCC	2 cut(s)	907, 1838
VspI	ATTAAT	1 cut(s)	1296
XapI	RAATTY	4 cut(s)	689, 869, 1061, 1095
XceI	RCATGY	3 cut(s)	107, 1266, 2399
XmaI	CCCGGG	1 cut(s)	1367
XmnI	GAANNNNTTC	2 cut(s)	974, 1871
ZrmI	AGTACT	1 cut(s)	1774
Zsp2I	ATGCAT	3 cut(s)	345, 421, 1218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.