Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Forward (+)

6172116 .. 6173666

Gene Structure 1551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22485

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCAATCGTCCTCCTGATTTTGATGATTGTCATTATGGCTGTCTTCCTCTTTAGTTATTTTTTCCTAATGCTGGCTGCTGCCAAACGGGAGATTCAACTTTGTACCAAACTCATAAAACAAGATGAGGCAATTCGACAAGCTGAGACAAAGAGTATGAAAAAATCTGATGCAATTACAAGCGCAAGCCATGATGTTCGTAATGCTCTTGCTTGCATGACTGAATTGATCAAGATATCCTGCAATGAAGTTTCCCAGGGCTCCGAAATAAAGAAATATCTAACACAAATGGATGCATGTACTAAACACCTCTTGGGTATTTTGAACTCTATTCTTGATAAAAGCAAAATTGAAGCGGGTAAGATGGTCCTTGAAGATGAGGAATTTGACATATTCCAACTTGTTGAAGAGGTAATCGATTTCTTTCTTCCATCGGGTTTAAAGAAGGGCATAGATGTGGTGTTGGATCCTTATGATTGCTCTCTCCTAAAGTTTGCACACGTGAGCGGTGATAGGAGAAGGCTTAAGCAAATATTATGCAACTTATTAGGGAATGCTGTCAAATTTACTTCAGAGGGACATGTCACAGTTCGTGCTTGGGTTCAGAAACCTAGTTTCATGAATTCAATCACTGCGCATGCTGATTCTGATCAGAATAATGGTTTCTTGAAGCATTTGTTGTGTTTTTTTAACAAGACCAAAGAACAGTCAGATGGCATAAAAGCAGTGATTGGTGTTCAACATGATCCAAATTATTTGGAATTTGTTTTTGAGGTGAATGATTCAGGGAGGGGAATTCCCAAGGAGAAGCAAAAAGAAGTGTTTGAAAACTATGTCCAAGTCAAAGAAAAAGCTCATGGAGAAGGAGGTACTGGCTTAGGACTTGGTATCGTTCAGTCTCTGGTAAGTACTGTGCATAATAACAATAATAATATATTCTTTGCTAAGTTTACTTATTGCTCGATGATCGAAGATAGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

327

Amino Acids

36.63

Weight (kDa)

6.32

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisKA	PF00512	55 - 120	8.1e-07	His Kinase A (phospho-acceptor) domain
HATPase_c	PF02518	243 - 307	2.3e-10	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	636
AccBSI	CCGCTC	1 cut(s)	507
AciI	CCGC	2 cut(s)	356, 507
AclWI	GGATC	3 cut(s)	461, 474, 740
AcsI	RAATTY	5 cut(s)	383, 563, 622, 761, 795
AcuI	CTGAAG	1 cut(s)	555
AcvI	CACGTG	1 cut(s)	502
AfaI	GTAC	5 cut(s)	106, 301, 871, 910, 979
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflII	CTTAAG	1 cut(s)	524
AflIII	ACRYGT	2 cut(s)	499, 580
AgsI	TTSAA	9 cut(s)	98, 325, 353, 374, 407, 627, 670, 740, 827
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	2 cut(s)	143, 854
AluI	AGCT	2 cut(s)	143, 854
Alw26I	GTCTC	2 cut(s)	140, 903
AlwI	GGATC	3 cut(s)	461, 474, 740
AlwNI	CAGNNNCTG	1 cut(s)	901
ApeKI	GCWGC	2 cut(s)	77, 80
ApoI	RAATTY	5 cut(s)	383, 563, 622, 761, 795
AspLEI	GCGC	2 cut(s)	185, 637
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	2 cut(s)	521, 787
AvaII	GGWCC	1 cut(s)	367
BamHI	GGATCC	1 cut(s)	466
BanII	GRGCYC	1 cut(s)	263
BbrPI	CACGTG	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	64, 67
BccI	CCATC	3 cut(s)	358, 439, 707
BciT130I	CCWGG	1 cut(s)	257
BclI	TGATCA	2 cut(s)	228, 649
BcoDI	GTCTC	2 cut(s)	140, 903
BfaI	CTAG	1 cut(s)	612
BfrI	CTTAAG	1 cut(s)	524
BisI	GCNGC	2 cut(s)	78, 81
BlsI	GCNGC	2 cut(s)	79, 82
BmcAI	AGTACT	2 cut(s)	910, 979
Bme1390I	CCNGG	1 cut(s)	257
Bme18I	GGWCC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	2 cut(s)	262, 468
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	2 cut(s)	160, 283
BpiI	GAAGAC	1 cut(s)	37
Bpu10I	CCTNAGC	1 cut(s)	877
Bsa29I	ATCGAT	1 cut(s)	417
BsaAI	YACGTR	1 cut(s)	502
BsaBI	GATNNNNATC	1 cut(s)	648
BsaJI	CCNNGG	3 cut(s)	255, 256, 801
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	877
Bse3DI	GCAATG	1 cut(s)	250
Bse8I	GATNNNNATC	1 cut(s)	648
BseBI	CCWGG	1 cut(s)	257
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	3 cut(s)	255, 256, 801
BseGI	GGATG	1 cut(s)	298
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	135
BseNI	ACTGG	1 cut(s)	877
BseXI	GCAGC	2 cut(s)	64, 67
BshVI	ATCGAT	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	2 cut(s)	140, 903
BsmFI	GGGAC	1 cut(s)	591
BsmI	GAATGC	1 cut(s)	559
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	5 cut(s)	228, 466, 649, 745, 966
BspACI	CCGC	2 cut(s)	356, 507
BspCNI	CTCAG	1 cut(s)	136
BspDI	ATCGAT	1 cut(s)	417
BspHI	TCATGA	1 cut(s)	618
BspLI	GGNNCC	2 cut(s)	262, 468
BspPI	GGATC	3 cut(s)	461, 474, 740
BspTI	CTTAAG	1 cut(s)	524
BsrBI	CCGCTC	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	250
BsrI	ACTGG	1 cut(s)	877
BssECI	CCNNGG	3 cut(s)	255, 256, 801
BssMI	GATC	5 cut(s)	228, 466, 649, 745, 966
BssT1I	CCWWGG	1 cut(s)	801
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	3 cut(s)	589, 708, 913
Bst6I	CTCTTC	1 cut(s)	402
BstAFI	CTTAAG	1 cut(s)	524
BstBAI	YACGTR	1 cut(s)	502
BstC8I	GCNNGC	4 cut(s)	75, 187, 214, 639
BstDEI	CTNAG	3 cut(s)	144, 877, 945
BstF5I	GGATG	1 cut(s)	298
BstHHI	GCGC	2 cut(s)	185, 637
BstKTI	GATC	5 cut(s)	231, 469, 652, 748, 969
BstMAI	GTCTC	2 cut(s)	140, 903
BstMBI	GATC	5 cut(s)	228, 466, 649, 745, 966
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	3 cut(s)	300, 584, 641
BstSCI	CCNGG	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	64, 67
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	466
BstYI	RGATCY	1 cut(s)	466
Bsu15I	ATCGAT	1 cut(s)	417
BsuTUI	ATCGAT	1 cut(s)	417
BtsCI	GGATG	1 cut(s)	298
BtsI	GCAGTG	2 cut(s)	630, 732
BtsIMutI	CAGTG	2 cut(s)	630, 732
Cac8I	GCNNGC	4 cut(s)	75, 187, 214, 639
CaiI	CAGNNNCTG	1 cut(s)	901
CciI	TCATGA	1 cut(s)	618
CfoI	GCGC	2 cut(s)	185, 637
Cfr13I	GGNCC	1 cut(s)	367
ClaI	ATCGAT	1 cut(s)	417
Csp6I	GTAC	5 cut(s)	105, 300, 870, 909, 978
CviAII	CATG	8 cut(s)	191, 217, 297, 581, 619, 638, 743, 857
CviJI	RGCY	8 cut(s)	41, 77, 143, 189, 261, 523, 854, 876
CviKI_1	RGCY	8 cut(s)	41, 77, 143, 189, 261, 523, 854, 876
CviQI	GTAC	5 cut(s)	105, 300, 870, 909, 978
DdeI	CTNAG	3 cut(s)	144, 877, 945
DpnI	GATC	5 cut(s)	230, 468, 651, 747, 968
DpnII	GATC	5 cut(s)	228, 466, 649, 745, 966
DraI	TTTAAA	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	402
Eco130I	CCWWGG	1 cut(s)	801
Eco24I	GRGCYC	1 cut(s)	263
Eco32I	GATATC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	555
Eco72I	CACGTG	1 cut(s)	502
EcoRI	GAATTC	2 cut(s)	622, 795
EcoRII	CCWGG	1 cut(s)	255
EcoRV	GATATC	1 cut(s)	237
EcoT14I	CCWWGG	1 cut(s)	801
EcoT22I	ATGCAT	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	801
FaeI	CATG	8 cut(s)	194, 220, 300, 584, 622, 641, 746, 860
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	8 cut(s)	190, 216, 296, 580, 618, 637, 742, 856
FauI	CCCGC	1 cut(s)	349
FbaI	TGATCA	2 cut(s)	228, 649
Fnu4HI	GCNGC	2 cut(s)	78, 81
FokI	GGATG	1 cut(s)	305
FriOI	GRGCYC	1 cut(s)	263
Fsp4HI	GCNGC	2 cut(s)	78, 81
FspBI	CTAG	1 cut(s)	612
FspI	TGCGCA	1 cut(s)	636
GlaI	GCGC	2 cut(s)	184, 636
GluI	GCNGC	2 cut(s)	78, 81
HhaI	GCGC	2 cut(s)	185, 637
Hin1II	CATG	8 cut(s)	194, 220, 300, 584, 622, 641, 746, 860
Hin6I	GCGC	2 cut(s)	183, 635
HinP1I	GCGC	2 cut(s)	183, 635
HinfI	GANTC	3 cut(s)	94, 644, 782
HphI	GGTGA	2 cut(s)	521, 787
Hpy166II	GTNNAC	1 cut(s)	951
Hpy188I	TCNGA	7 cut(s)	169, 265, 574, 606, 649, 654, 712
Hpy188III	TCNNGA	5 cut(s)	16, 232, 335, 619, 667
Hpy8I	GTNNAC	1 cut(s)	951
HpyAV	CCTTC	3 cut(s)	439, 513, 857
HpyCH4III	ACNGT	3 cut(s)	589, 708, 913
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	7 cut(s)	173, 216, 243, 296, 497, 540, 916
HpyF3I	CTNAG	3 cut(s)	144, 877, 945
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	8 cut(s)	194, 220, 300, 584, 622, 641, 746, 860
HspAI	GCGC	2 cut(s)	183, 635
Ksp22I	TGATCA	2 cut(s)	228, 649
Kzo9I	GATC	5 cut(s)	228, 466, 649, 745, 966
LmnI	GCTCC	1 cut(s)	266
LpnPI	CCDG	8 cut(s)	29, 59, 242, 253, 269, 771, 858, 887
Lsp1109I	GCAGC	2 cut(s)	64, 67
LweI	GCATC	2 cut(s)	160, 283
MaeI	CTAG	1 cut(s)	612
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	1 cut(s)	583
MalI	GATC	5 cut(s)	230, 468, 651, 747, 968
MbiI	CCGCTC	1 cut(s)	507
MboI	GATC	5 cut(s)	228, 466, 649, 745, 966
MboII	GAAGA	5 cut(s)	37, 386, 419, 419, 983
MflI	RGATCY	1 cut(s)	466
MhlI	GDGCHC	1 cut(s)	263
MmeI	TCCRAC	2 cut(s)	421, 444
Mph1103I	ATGCAT	1 cut(s)	298
MseI	TTAA	3 cut(s)	440, 525, 690
MslI	CAYNNNNRTG	1 cut(s)	455
MspCI	CTTAAG	1 cut(s)	524
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	1 cut(s)	257
NdeII	GATC	5 cut(s)	228, 466, 649, 745, 966
NlaIII	CATG	8 cut(s)	194, 220, 300, 584, 622, 641, 746, 860
NlaIV	GGNNCC	2 cut(s)	262, 468
NmuCI	GTSAC	1 cut(s)	583
NsbI	TGCGCA	1 cut(s)	636
NsiI	ATGCAT	1 cut(s)	298
NspI	RCATGY	3 cut(s)	300, 584, 641
PaeI	GCATGC	1 cut(s)	641
PagI	TCATGA	1 cut(s)	618
PasI	CCCWGGG	1 cut(s)	256
PciI	ACATGT	1 cut(s)	580
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	3 cut(s)	94, 644, 782
PkrI	GCNGC	2 cut(s)	79, 82
PmaCI	CACGTG	1 cut(s)	502
PmlI	CACGTG	1 cut(s)	502
Ppu21I	YACGTR	1 cut(s)	502
PscI	ACATGT	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	255
PspCI	CACGTG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	262, 468
PspPI	GGNCC	1 cut(s)	367
PstNI	CAGNNNCTG	1 cut(s)	901
PsuI	RGATCY	1 cut(s)	466
RsaI	GTAC	5 cut(s)	106, 301, 871, 910, 979
RsaNI	GTAC	5 cut(s)	105, 300, 870, 909, 978
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	3 cut(s)	440, 525, 690
SatI	GCNGC	2 cut(s)	78, 81
Sau3AI	GATC	5 cut(s)	228, 466, 649, 745, 966
Sau96I	GGNCC	1 cut(s)	367
ScaI	AGTACT	2 cut(s)	910, 979
ScrFI	CCNGG	1 cut(s)	257
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	8 cut(s)	145, 312, 414, 504, 613, 777, 856, 871
SfaNI	GCATC	2 cut(s)	160, 283
SinI	GGWCC	1 cut(s)	367
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SphI	GCATGC	1 cut(s)	641
SsiI	CCGC	2 cut(s)	356, 507
SspI	AATATT	1 cut(s)	534
SspMI	CTAG	1 cut(s)	612
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	1 cut(s)	801
TaaI	ACNGT	3 cut(s)	589, 708, 913
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	4 cut(s)	136, 417, 962, 969
TatI	WGTACW	3 cut(s)	299, 908, 977
TfiI	GAWTC	3 cut(s)	94, 644, 782
Tru1I	TTAA	3 cut(s)	440, 525, 690
Tru9I	TTAA	3 cut(s)	440, 525, 690
TscAI	CASTG	2 cut(s)	637, 732
TseFI	GTSAC	1 cut(s)	583
TseI	GCWGC	2 cut(s)	77, 80
Tsp45I	GTSAC	1 cut(s)	583
TspDTI	ATGAA	4 cut(s)	173, 261, 607, 635
TspRI	CASTG	2 cut(s)	637, 732
Vha464I	CTTAAG	1 cut(s)	524
VpaK11BI	GGWCC	1 cut(s)	367
XapI	RAATTY	5 cut(s)	383, 563, 622, 761, 795
XceI	RCATGY	3 cut(s)	300, 584, 641
XspI	CTAG	1 cut(s)	612
ZrmI	AGTACT	2 cut(s)	910, 979
Zsp2I	ATGCAT	1 cut(s)	298

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.