Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Reverse (-)

67697473 .. 67700130

Gene Structure 2658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00217190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2355 bp

ATGCTGGCTGCTGCCAAACGGGAGATTCAACTTTGTACCAAACTCATAAAACAAGATGAGGCAATTCGACAAGCTGAGACAAAGAGTATGAAAAAATCTGATGCAATTACAAGTGCAAGCCATGATGTTCGTAATGCTCTTGCTTGCATGACTGAATTGATCAAGATATCCTGCAATGAAGTTTCCCAGGGCTCTGAAATAAAGAAATATCTAACACAAATGGATGCATGTACTAAACACCTCTTAGGTATTTTGAACTCTATTCTTGATAAAAGCAAAATTGAAGCGGGTAAGATGGTCCTTGAAGATGAGGAATTTGACATATTCCAACTTGTTGAAGAGGTAATCGATTTCTTTCTTCCATCGGGTTTAAAGAAGGGCATAGATGTGGTGTTGGATCCTTATGATTGCTCTCTCCTAAAGTTTGCACACGTGAGCGGTGATAGGAGAAGGCTTAAGCAAATATTATGCAACTTATTAGGGAATGCTGTCAAATTTACTTCAGAGGGACATGTCACAGTTCGTGCTTGGGTTCAGAAACCTAGTTTCATGAATTCAATCACTGCGCATGCTGATTCTGATCAGAATAATGGTTTCTTGAAGCATTTGTTGTGTTTTTTGAACAACAAGAACATGACCAAAGAACAGTCAGATGGCATAAAAGCAGTGAATGGTGTTCAACATGATCCAAATTATTTGGAATTTGTTTTTGAGGTGAATGATTCAGGGAGGGGAATTCCCAAGGAGAAGCAAAAAGAAGTGTTTGAAAACTATGTCCAAGTCAAAGAAAAAGCTCATGGAGAAGGAGGTACTGGCTTAGGACTTGGTATCGTTCAGTCTCTGGTACGCTTGATGCACGGAGAAATAGGAATTGTGGACAAGGAGATTGGTGAAAAAGGGACATGCTTCAAGTTTAATGTTCTCCTGAGAGCTATTAATCTGCGTGAGGATCATATAAAATTACAACAAGACCTTGAATTGGGAGGTGACCCTAGTTGTGATGACAGAGATCAACAATTGGGATTAATAGCAAATGCAAACCCCAGGTTGACCATAATTCCTAGTCCAAATCTCACACCAATTGGCAGTCCTAGGTTGAATGTATTCCGCAGCACCACTAGTAGTGCTAAGGTAGAGGAATCCATTGTTGTACTACTGATTAAAAATGAAGAGCGGCGGAGAATAGTTTACCAGTTCATGAAGAGCAGCCTTGGGATAAAGGTATCAGTGGTAGAACAATGGGGACAACTAGCTCATACTCTCAAGAAAGTAGAACACATGAAGATGAAGGGTCATCCTAGTTCGTCTTCAGGAATATCTGATTTGGGTCTGCAGGACTGCTTGAGCAAATCTACATCATGCAACTCCGGTAATAGAGCAAAGGAGGTGCACACTTTAATGAGTGCTATGGATGAAACGTACAGCAATATGTGCTCTCTATTTAAGAAGACGACTACCAATGTTAGTGGTGCATCGGCCTTTATATTGCTAGTGATAGATACTACAGCTGGACCATATATGCAATTATATAAGATTATAACTGAGTTCAAAAGAGGCCTTCAAAATGCTTCGTGCAGGACCGTTTGGTTAGAAAATCCGCAGTCTCATAGATTAATGGACTTGAGTGGCCTTGATCCGGATGATGTCATCATAAAAAGGGCACTTCACGGTACTTGTCTTTTCGAAGTGGTAAGATTTCTTCCAGAGTATGGGGGTGCACTACCAAATATATCAGCAGGGGAGACATTTCAGGTTGGATCAAAAGTAGTCTCCCGAGCTCCTAGTTCGTCAAGATATCGGTTACATACTGATGATGAATCTGATATCTCATCTTCACCAATCCAATGTCATGATCAGTCTCATAATGTTGGCTCTACATCAAGAAACTCACCGGTTGGTCATGATCACCCACATCCACATAGAGAAACACATGAACATGGTAATCCGAGCACAGCCTTGAGTGGGAAAAAAATTTTGGTTGCCGAGGATGATGAGCTTTTGAGCTATTTGGCTATGAGAATTCTGTTAAAGGAGGGAGCAACTGTGAAGCCTTGTAAAAATGGAAGAGAAGCTCTAGATGTAATTCGCATAGATCTAGACAACCAAGGGAGACATGAATATGATTTTGTACTAATGGACTGTCAGATGCCAGAAATGGATGGATTTGAAGCGACAAGGGAGATAAGGAAAGTGGAGAAAACTCACCATGTTCGCATTCCGATCATTGCATTAACAGCTCATACACCAGGCGAGGAAACAAGACGGATGTTGGAGGCCGGCATGGACGACTATTTGAGCAAACCCTTGGAAAAGGATCGTCTGCTTGAAACAATGGGTAGACTGGTAGGCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

784

Amino Acids

87.31

Weight (kDa)

6.58

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisKA	PF00512	32 - 97	2.9e-06	His Kinase A (phospho-acceptor) domain
HATPase_c	PF02518	234 - 308	2.7e-14	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Response_reg	PF00072	658 - 777	2.5e-23	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1538
Acc16I	TGCGCA	1 cut(s)	567
AccB7I	CCANNNNNTGG	1 cut(s)	1709
AccBSI	CCGCTC	2 cut(s)	438, 1174
AccI	GTMKAC	1 cut(s)	2338
AccIII	TCCGGA	1 cut(s)	1636
AciI	CCGC	6 cut(s)	287, 438, 1108, 1174, 1177, 1598
AclWI	GGATC	7 cut(s)	392, 405, 680, 957, 1628, 1765, 2322
AcsI	RAATTY	7 cut(s)	314, 494, 553, 701, 735, 1971, 2019
AcuI	CTGAAG	2 cut(s)	486, 1293
AcvI	CACGTG	1 cut(s)	433
AfaI	GTAC	8 cut(s)	37, 232, 811, 846, 1152, 1421, 1672, 2130
AfiI	CCNNNNNNNGG	4 cut(s)	979, 1636, 1709, 1962
AflII	CTTAAG	1 cut(s)	455
AflIII	ACRYGT	2 cut(s)	430, 511
AgeI	ACCGGT	1 cut(s)	1891
AhlI	ACTAGT	1 cut(s)	1118
AjnI	CCWGG	3 cut(s)	186, 1043, 2245
AjuI	GAANNNNNNNTTGG	2 cut(s)	1958, 1990
Alw21I	GWGCWC	5 cut(s)	1392, 1436, 1720, 1780, 1952
Alw26I	GTCTC	7 cut(s)	71, 843, 1608, 1736, 1774, 1863, 2104
Alw44I	GTGCAC	2 cut(s)	1388, 1716
AlwI	GGATC	7 cut(s)	392, 405, 680, 957, 1628, 1765, 2322
AlwNI	CAGNNNCTG	1 cut(s)	841
Ama87I	CYCGRG	1 cut(s)	1773
Aor13HI	TCCGGA	1 cut(s)	1636
AoxI	GGCC	4 cut(s)	1476, 1555, 1627, 2274
ApaLI	GTGCAC	2 cut(s)	1388, 1716
ApeKI	GCWGC	4 cut(s)	8, 11, 1110, 1206
ApoI	RAATTY	7 cut(s)	314, 494, 553, 701, 735, 1971, 2019
AseI	ATTAAT	3 cut(s)	936, 1025, 1613
AsiGI	ACCGGT	1 cut(s)	1891
Asp700I	GAANNNNTTC	1 cut(s)	1103
AspA2I	CCTAGG	1 cut(s)	1091
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	3 cut(s)	298, 1511, 1578
AsuHPI	GGTGA	8 cut(s)	452, 727, 902, 998, 1827, 1881, 1898, 2195
AsuII	TTCGAA	1 cut(s)	1683
AvaI	CYCGRG	1 cut(s)	1773
AvaII	GGWCC	3 cut(s)	298, 1511, 1578
AvrII	CCTAGG	1 cut(s)	1091
BaeGI	GKGCMC	3 cut(s)	1392, 1663, 1720
BamHI	GGATCC	1 cut(s)	397
BanII	GRGCYC	2 cut(s)	194, 1780
BarI	GAAGNNNNNNTAC	2 cut(s)	1683, 1715
BbrPI	CACGTG	1 cut(s)	433
BbsI	GAAGAC	2 cut(s)	1299, 1454
Bbv12I	GWGCWC	5 cut(s)	1392, 1436, 1720, 1780, 1952
BbvI	GCAGC	2 cut(s)	1122, 1218
BccI	CCATC	4 cut(s)	289, 370, 647, 2153
BciT130I	CCWGG	3 cut(s)	188, 1045, 2247
BclI	TGATCA	4 cut(s)	159, 580, 1852, 1903
BcoDI	GTCTC	7 cut(s)	71, 843, 1608, 1736, 1774, 1863, 2104
BcuI	ACTAGT	1 cut(s)	1118
BfmI	CTRYAG	2 cut(s)	1331, 1503
BfrI	CTTAAG	1 cut(s)	455
BglII	AGATCT	1 cut(s)	2092
BisI	GCNGC	5 cut(s)	9, 12, 1111, 1175, 1207
BlnI	CCTAGG	1 cut(s)	1091
BlsI	GCNGC	5 cut(s)	10, 13, 1112, 1176, 1208
Bme1390I	CCNGG	3 cut(s)	188, 1045, 2247
Bme18I	GGWCC	3 cut(s)	298, 1511, 1578
BmeT110I	CYCGRG	1 cut(s)	1773
BmgT120I	GGNCC	3 cut(s)	298, 1511, 1578
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	3 cut(s)	188, 1045, 2247
BmsI	GCATC	5 cut(s)	91, 214, 843, 1481, 2136
BpiI	GAAGAC	2 cut(s)	1299, 1454
Bpu10I	CCTNAGC	2 cut(s)	817, 1128
Bpu14I	TTCGAA	1 cut(s)	1683
BpuEI	CTTGAG	4 cut(s)	1247, 1363, 1642, 1978
Bsa29I	ATCGAT	1 cut(s)	348
BsaAI	YACGTR	1 cut(s)	433
BsaBI	GATNNNNATC	1 cut(s)	579
BsaJI	CCNNGG	9 cut(s)	186, 187, 741, 1043, 1091, 1210, 1983, 2104, 2304
BsaWI	WCCGGW	3 cut(s)	1367, 1636, 1891
BsaXI	ACNNNNNCTCC	2 cut(s)	2028, 2058
Bsc4I	CCNNNNNNNGG	4 cut(s)	979, 1636, 1709, 1962
Bse118I	RCCGGY	2 cut(s)	1891, 2276
Bse1I	ACTGG	3 cut(s)	817, 1192, 2346
Bse3DI	GCAATG	2 cut(s)	181, 2223
Bse8I	GATNNNNATC	1 cut(s)	579
BseAI	TCCGGA	1 cut(s)	1636
BseBI	CCWGG	3 cut(s)	188, 1045, 2247
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	9 cut(s)	186, 187, 741, 1043, 1091, 1210, 1983, 2104, 2304
BseGI	GGATG	8 cut(s)	229, 1294, 1417, 1645, 1912, 1993, 2164, 2271
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	4 cut(s)	979, 1636, 1709, 1962
BseMI	GCAATG	2 cut(s)	181, 2223
BseMII	CTCAG	3 cut(s)	66, 917, 1533
BseNI	ACTGG	3 cut(s)	817, 1192, 2346
BseSI	GKGCMC	3 cut(s)	1392, 1663, 1720
BseXI	GCAGC	2 cut(s)	1122, 1218
BsgI	GTGCAG	1 cut(s)	1594
BshFI	GGCC	4 cut(s)	1478, 1557, 1629, 2276
BshTI	ACCGGT	1 cut(s)	1891
BshVI	ATCGAT	1 cut(s)	348
BsiHKAI	GWGCWC	5 cut(s)	1392, 1436, 1720, 1780, 1952
BsiHKCI	CYCGRG	1 cut(s)	1773
BsiSI	CCGG	4 cut(s)	1368, 1637, 1892, 2277
BslFI	GGGAC	3 cut(s)	522, 913, 1257
BslI	CCNNNNNNNGG	4 cut(s)	979, 1636, 1709, 1962
BsmAI	GTCTC	7 cut(s)	71, 843, 1608, 1736, 1774, 1863, 2104
BsmFI	GGGAC	3 cut(s)	522, 913, 1257
BsmI	GAATGC	2 cut(s)	490, 2214
BsnI	GGCC	4 cut(s)	1478, 1557, 1629, 2276
BsoBI	CYCGRG	1 cut(s)	1773
Bsp119I	TTCGAA	1 cut(s)	1683
Bsp1286I	GDGCHC	7 cut(s)	194, 1392, 1436, 1663, 1720, 1780, 1952
Bsp13I	TCCGGA	1 cut(s)	1636
BspACI	CCGC	6 cut(s)	287, 438, 1108, 1174, 1177, 1598
BspANI	GGCC	4 cut(s)	1478, 1557, 1629, 2276
BspCNI	CTCAG	3 cut(s)	67, 918, 1534
BspDI	ATCGAT	1 cut(s)	348
BspEI	TCCGGA	1 cut(s)	1636
BspHI	TCATGA	4 cut(s)	549, 1197, 1849, 1900
BspLI	GGNNCC	1 cut(s)	399
BspMAI	CTGCAG	1 cut(s)	1335
BspPI	GGATC	7 cut(s)	392, 405, 680, 957, 1628, 1765, 2322
BspQI	GCTCTTC	2 cut(s)	1164, 1196
BspT104I	TTCGAA	1 cut(s)	1683
BspTI	CTTAAG	1 cut(s)	455
BsrBI	CCGCTC	2 cut(s)	438, 1174
BsrDI	GCAATG	2 cut(s)	181, 2223
BsrFI	RCCGGY	2 cut(s)	1891, 2276
BsrI	ACTGG	3 cut(s)	817, 1192, 2346
BssAI	RCCGGY	2 cut(s)	1891, 2276
BssECI	CCNNGG	9 cut(s)	186, 187, 741, 1043, 1091, 1210, 1983, 2104, 2304
BssT1I	CCWWGG	5 cut(s)	741, 1091, 1210, 2104, 2304
Bst2UI	CCWGG	3 cut(s)	188, 1045, 2247
Bst4CI	ACNGT	6 cut(s)	520, 648, 1582, 1670, 2044, 2141
Bst6I	CTCTTC	4 cut(s)	333, 1164, 1196, 2059
BstAFI	CTTAAG	1 cut(s)	455
BstAPI	GCANNNNNTGC	1 cut(s)	1431
BstBAI	YACGTR	1 cut(s)	433
BstBI	TTCGAA	1 cut(s)	1683
BstC8I	GCNNGC	5 cut(s)	6, 118, 145, 570, 2278
BstDEI	CTNAG	6 cut(s)	75, 244, 817, 926, 1128, 1542
BstEII	GGTNACC	1 cut(s)	986
BstF5I	GGATG	8 cut(s)	229, 1294, 1417, 1645, 1912, 1993, 2164, 2271
BstHHI	GCGC	1 cut(s)	568
BstMAI	GTCTC	7 cut(s)	71, 843, 1608, 1736, 1774, 1863, 2104
BstMWI	GCNNNNNNNGC	2 cut(s)	1431, 2234
BstNI	CCWGG	3 cut(s)	188, 1045, 2247
BstNSI	RCATGY	4 cut(s)	231, 515, 572, 906
BstPI	GGTNACC	1 cut(s)	986
BstSCI	CCNGG	3 cut(s)	186, 1043, 2245
BstSFI	CTRYAG	2 cut(s)	1331, 1503
BstSLI	GKGCMC	3 cut(s)	1392, 1663, 1720
BstV1I	GCAGC	2 cut(s)	1122, 1218
BstV2I	GAAGAC	2 cut(s)	1299, 1454
BstX2I	RGATCY	2 cut(s)	397, 2092
BstYI	RGATCY	2 cut(s)	397, 2092
Bsu15I	ATCGAT	1 cut(s)	348
BsuRI	GGCC	4 cut(s)	1478, 1557, 1629, 2276
BsuTUI	ATCGAT	1 cut(s)	348
BtsCI	GGATG	8 cut(s)	229, 1294, 1417, 1645, 1912, 1993, 2164, 2271
BtsI	GCAGTG	2 cut(s)	561, 672
BtsIMutI	CAGTG	3 cut(s)	561, 672, 1233
Cac8I	GCNNGC	5 cut(s)	6, 118, 145, 570, 2278
CaiI	CAGNNNCTG	1 cut(s)	841
CciI	TCATGA	4 cut(s)	549, 1197, 1849, 1900
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	2 cut(s)	1891, 2276
Cfr13I	GGNCC	3 cut(s)	298, 1511, 1578
ClaI	ATCGAT	1 cut(s)	348
Csp6I	GTAC	8 cut(s)	36, 231, 810, 845, 1151, 1420, 1671, 2129
CspAI	ACCGGT	1 cut(s)	1891
CspCI	CAANNNNNGTGG	2 cut(s)	1447, 1482
CviQI	GTAC	8 cut(s)	36, 231, 810, 845, 1151, 1420, 1671, 2129
DdeI	CTNAG	6 cut(s)	75, 244, 817, 926, 1128, 1542
DraI	TTTAAA	1 cut(s)	372
Eam1104I	CTCTTC	4 cut(s)	333, 1164, 1196, 2059
EarI	CTCTTC	4 cut(s)	333, 1164, 1196, 2059
EciI	GGCGGA	1 cut(s)	1192
Ecl136II	GAGCTC	1 cut(s)	1778
Eco130I	CCWWGG	5 cut(s)	741, 1091, 1210, 2104, 2304
Eco147I	AGGCCT	1 cut(s)	1557
Eco24I	GRGCYC	2 cut(s)	194, 1780
Eco32I	GATATC	3 cut(s)	168, 1796, 1825
Eco47I	GGWCC	3 cut(s)	298, 1511, 1578
Eco53kI	GAGCTC	1 cut(s)	1778
Eco57I	CTGAAG	2 cut(s)	486, 1293
Eco72I	CACGTG	1 cut(s)	433
Eco88I	CYCGRG	1 cut(s)	1773
Eco91I	GGTNACC	1 cut(s)	986
EcoICRI	GAGCTC	1 cut(s)	1778
EcoO65I	GGTNACC	1 cut(s)	986
EcoRI	GAATTC	3 cut(s)	553, 735, 2019
EcoRII	CCWGG	3 cut(s)	186, 1043, 2245
EcoRV	GATATC	3 cut(s)	168, 1796, 1825
EcoT14I	CCWWGG	5 cut(s)	741, 1091, 1210, 2104, 2304
EcoT22I	ATGCAT	1 cut(s)	229
EcoT38I	GRGCYC	2 cut(s)	194, 1780
ErhI	CCWWGG	5 cut(s)	741, 1091, 1210, 2104, 2304
FaqI	GGGAC	3 cut(s)	522, 913, 1257
FauI	CCCGC	1 cut(s)	280
FbaI	TGATCA	4 cut(s)	159, 580, 1852, 1903
FblI	GTMKAC	1 cut(s)	2338
Fnu4HI	GCNGC	5 cut(s)	9, 12, 1111, 1175, 1207
FokI	GGATG	8 cut(s)	236, 1281, 1424, 1652, 1899, 2000, 2171, 2278
FriOI	GRGCYC	2 cut(s)	194, 1780
Fsp4HI	GCNGC	5 cut(s)	9, 12, 1111, 1175, 1207
FspI	TGCGCA	1 cut(s)	567
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	5 cut(s)	9, 12, 1111, 1175, 1207
HaeIII	GGCC	4 cut(s)	1478, 1557, 1629, 2276
HapII	CCGG	4 cut(s)	1368, 1637, 1892, 2277
HhaI	GCGC	1 cut(s)	568
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	1 cut(s)	1050
HindII	GTYRAC	1 cut(s)	1050
HinfI	GANTC	5 cut(s)	25, 575, 722, 1139, 1817
HpaII	CCGG	4 cut(s)	1368, 1637, 1892, 2277
HphI	GGTGA	8 cut(s)	452, 727, 902, 998, 1827, 1881, 1898, 2195
Hpy166II	GTNNAC	6 cut(s)	877, 1050, 1189, 1390, 1718, 2339
Hpy8I	GTNNAC	6 cut(s)	877, 1050, 1189, 1390, 1718, 2339
HpyAV	CCTTC	5 cut(s)	370, 444, 797, 1282, 1568
HpyCH4III	ACNGT	6 cut(s)	520, 648, 1582, 1670, 2044, 2141
HpyCH4IV	ACGT	2 cut(s)	432, 1418
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1431, 2234
HpyF3I	CTNAG	6 cut(s)	75, 244, 817, 926, 1128, 1542
HpySE526I	ACGT	2 cut(s)	432, 1418
HspAI	GCGC	1 cut(s)	566
Kpn2I	TCCGGA	1 cut(s)	1636
KroI	GCCGGC	1 cut(s)	2276
KroNI	GCCGGC	1 cut(s)	2278
Ksp22I	TGATCA	4 cut(s)	159, 580, 1852, 1903
LguI	GCTCTTC	2 cut(s)	1164, 1196
LmnI	GCTCC	2 cut(s)	1783, 2036
Lsp1109I	GCAGC	2 cut(s)	1122, 1218
LweI	GCATC	5 cut(s)	91, 214, 843, 1481, 2136
MaeII	ACGT	2 cut(s)	432, 1418
MaeIII	GTNAC	3 cut(s)	514, 986, 1800
MbiI	CCGCTC	2 cut(s)	438, 1174
MfeI	CAATTG	2 cut(s)	1016, 1080
MflI	RGATCY	2 cut(s)	397, 2092
MhlI	GDGCHC	7 cut(s)	194, 1392, 1436, 1663, 1720, 1780, 1952
MmeI	TCCRAC	4 cut(s)	352, 375, 1735, 2250
Mph1103I	ATGCAT	1 cut(s)	229
MroI	TCCGGA	1 cut(s)	1636
MroNI	GCCGGC	1 cut(s)	2276
MroXI	GAANNNNTTC	1 cut(s)	1103
MslI	CAYNNNNRTG	6 cut(s)	386, 1283, 1397, 1809, 1935, 2118
MspA1I	CMGCKG	1 cut(s)	1508
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	4 cut(s)	1368, 1637, 1892, 2277
MspR9I	CCNGG	3 cut(s)	188, 1045, 2247
MunI	CAATTG	2 cut(s)	1016, 1080
Mva1269I	GAATGC	2 cut(s)	490, 2214
MvaI	CCWGG	3 cut(s)	188, 1045, 2247
MwoI	GCNNNNNNNGC	2 cut(s)	1431, 2234
NaeI	GCCGGC	1 cut(s)	2278
NgoMIV	GCCGGC	1 cut(s)	2276
NlaIV	GGNNCC	1 cut(s)	399
NmeAIII	GCCGAG	1 cut(s)	2008
NmuCI	GTSAC	2 cut(s)	514, 986
NsbI	TGCGCA	1 cut(s)	567
NsiI	ATGCAT	1 cut(s)	229
NspI	RCATGY	4 cut(s)	231, 515, 572, 906
NspV	TTCGAA	1 cut(s)	1683
PaeI	GCATGC	1 cut(s)	572
PagI	TCATGA	4 cut(s)	549, 1197, 1849, 1900
PasI	CCCWGGG	1 cut(s)	187
PceI	AGGCCT	1 cut(s)	1557
PciI	ACATGT	1 cut(s)	511
PciSI	GCTCTTC	2 cut(s)	1164, 1196
PctI	GAATGC	2 cut(s)	490, 2214
PdiI	GCCGGC	1 cut(s)	2278
PdmI	GAANNNNTTC	1 cut(s)	1103
PfeI	GAWTC	5 cut(s)	25, 575, 722, 1139, 1817
PflMI	CCANNNNNTGG	1 cut(s)	1709
PinAI	ACCGGT	1 cut(s)	1891
PkrI	GCNGC	5 cut(s)	10, 13, 1112, 1176, 1208
PmaCI	CACGTG	1 cut(s)	433
PmlI	CACGTG	1 cut(s)	433
Ppu21I	YACGTR	1 cut(s)	433
PscI	ACATGT	1 cut(s)	511
PshBI	ATTAAT	3 cut(s)	936, 1025, 1613
PsiI	TTATAA	1 cut(s)	1538
Psp124BI	GAGCTC	1 cut(s)	1780
Psp6I	CCWGG	3 cut(s)	186, 1043, 2245
PspCI	CACGTG	1 cut(s)	433
PspEI	GGTNACC	1 cut(s)	986
PspGI	CCWGG	3 cut(s)	186, 1043, 2245
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	3 cut(s)	298, 1511, 1578
PstI	CTGCAG	1 cut(s)	1335
PstNI	CAGNNNCTG	1 cut(s)	841
PsuI	RGATCY	2 cut(s)	397, 2092
PvuII	CAGCTG	1 cut(s)	1508
RsaI	GTAC	8 cut(s)	37, 232, 811, 846, 1152, 1421, 1672, 2130
RsaNI	GTAC	8 cut(s)	36, 231, 810, 845, 1151, 1420, 1671, 2129
RseI	CAYNNNNRTG	6 cut(s)	386, 1283, 1397, 1809, 1935, 2118
SacI	GAGCTC	1 cut(s)	1780
SapI	GCTCTTC	2 cut(s)	1164, 1196
SatI	GCNGC	5 cut(s)	9, 12, 1111, 1175, 1207
Sau96I	GGNCC	3 cut(s)	298, 1511, 1578
ScrFI	CCNGG	3 cut(s)	188, 1045, 2247
SduI	GDGCHC	7 cut(s)	194, 1392, 1436, 1663, 1720, 1780, 1952
SfaNI	GCATC	5 cut(s)	91, 214, 843, 1481, 2136
SfcI	CTRYAG	2 cut(s)	1331, 1503
SfuI	TTCGAA	1 cut(s)	1683
SinI	GGWCC	3 cut(s)	298, 1511, 1578
SmiMI	CAYNNNNRTG	6 cut(s)	386, 1283, 1397, 1809, 1935, 2118
SmlI	CTYRAG	5 cut(s)	455, 1262, 1342, 1621, 1957
SmoI	CTYRAG	5 cut(s)	455, 1262, 1342, 1621, 1957
SpeI	ACTAGT	1 cut(s)	1118
SphI	GCATGC	1 cut(s)	572
SseBI	AGGCCT	1 cut(s)	1557
SsiI	CCGC	6 cut(s)	287, 438, 1108, 1174, 1177, 1598
SspI	AATATT	1 cut(s)	465
SstI	GAGCTC	1 cut(s)	1780
StuI	AGGCCT	1 cut(s)	1557
StyD4I	CCNGG	3 cut(s)	186, 1043, 2245
StyI	CCWWGG	5 cut(s)	741, 1091, 1210, 2104, 2304
TaaI	ACNGT	6 cut(s)	520, 648, 1582, 1670, 2044, 2141
TaiI	ACGT	2 cut(s)	435, 1421
TaqI	TCGA	3 cut(s)	67, 348, 1683
TatI	WGTACW	3 cut(s)	230, 1150, 2128
TauI	GCSGC	1 cut(s)	1177
TfiI	GAWTC	5 cut(s)	25, 575, 722, 1139, 1817
TscAI	CASTG	3 cut(s)	568, 672, 1233
TseFI	GTSAC	2 cut(s)	514, 986
TseI	GCWGC	4 cut(s)	8, 11, 1110, 1206
Tsp45I	GTSAC	2 cut(s)	514, 986
TspGWI	ACGGA	2 cut(s)	873, 2278
TspRI	CASTG	3 cut(s)	568, 672, 1233
Van91I	CCANNNNNTGG	1 cut(s)	1709
Vha464I	CTTAAG	1 cut(s)	455
VneI	GTGCAC	2 cut(s)	1388, 1716
VpaK11BI	GGWCC	3 cut(s)	298, 1511, 1578
VspI	ATTAAT	3 cut(s)	936, 1025, 1613
XapI	RAATTY	7 cut(s)	314, 494, 553, 701, 735, 1971, 2019
XbaI	TCTAGA	2 cut(s)	2074, 2095
XceI	RCATGY	4 cut(s)	231, 515, 572, 906
XmaJI	CCTAGG	1 cut(s)	1091
XmiI	GTMKAC	1 cut(s)	2338
XmnI	GAANNNNTTC	1 cut(s)	1103
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.