Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Reverse (-)

554756 .. 556241

Gene Structure 1486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG003700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGACCAAAGAACAATTAGATCGCATCAAAGCAGTGAATGTGGTTCAAAATGATCCAAATTTTTTGGAATTTGTTTTTGAGGTGGATGATACAGGGAGGGGAATTCCCAAGGAGAAGCAAAAAGAAGTGTTTGAAAACTATGTTCAGGTCAAAGAAAAAGCTCATGGAGAAGGAGGTACTGGCTTAGGACTTGGTATTGTTCAGTCTCTGGAGATTAGTGAAAAAGGGACATGCTTCAGGTTTAATGTTCTCCTCAGAGCTATTAATGTGAATAAGGATCATATAAAATTACAACAAGAACTTGAATTGGGAGGTGACCCTAGTTATGATGACAGAGATCAACAATTGGGATTAATAGCAGCTATACGCACACCAAATGCAAACTCCGGGTTGACCATAGTTCCTAGTCTGAAGCTCACGCCACTTGGAAGCCCCCGGTTGAATGTATTCCGCAGCACTCCTAGTAGTCCTAAGGACTGCTTGAGCAAATCTACATCATGCAACTCCAGTAATGGAGCAAAGGAGGTGCACCCTTTAATGAGTGCTATGGATGAAACGTATAACAACATGCTCTCTCTGTTTAAGAAGACGACCACCCATCTACGTGATGCATCTGCCTTTATATTGGTAGTGATAGATACTAAAGCTGGGCCATTTCCGGAATTATGTAAGATTGTAACTGAGTTCAAAAGAGGCCTTCAAAATGCTTGGTGCAGGACCGTTTGGTTAGAAAATCCGCAGTCTCATAGATTAATGGACAAGGATGATGTCATCATTGAAAGGGCACTTCATAGTACTTTTCTATTTGAAGTGGTAAGATTACTTCCAGAGTATGGGGGTGCAATACCAAAGAGATCAGCAGGGGACACATTTCAGCCACTTCCACATGGAGAAACACATGAACATGGTAATCCGAGCACACCCTTGAGTGGGAAAAAAATTTTGGTTGTGAGGATGATGAGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

322

Amino Acids

35.83

Weight (kDa)

7.12

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	23 - 71	2.5e-09	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	833
AccIII	TCCGGA	1 cut(s)	658
AciI	CCGC	2 cut(s)	451, 737
AclWI	GGATC	2 cut(s)	47, 285
AcsI	RAATTY	4 cut(s)	58, 68, 102, 939
AcuI	CTGAAG	2 cut(s)	220, 431
AfaI	GTAC	2 cut(s)	178, 796
AfiI	CCNNNNNNNGG	3 cut(s)	833, 929, 930
AgsI	TTSAA	8 cut(s)	47, 134, 305, 442, 688, 701, 779, 809
AjuI	GAANNNNNNNTTGG	2 cut(s)	926, 958
AluBI	AGCT	6 cut(s)	161, 260, 362, 415, 647, 963
AluI	AGCT	6 cut(s)	161, 260, 362, 415, 647, 963
Alw21I	GWGCWC	2 cut(s)	531, 920
Alw26I	GTCTC	2 cut(s)	210, 747
Alw44I	GTGCAC	1 cut(s)	527
AlwI	GGATC	2 cut(s)	47, 285
AlwNI	CAGNNNCTG	1 cut(s)	208
Aor13HI	TCCGGA	1 cut(s)	658
AoxI	GGCC	2 cut(s)	650, 694
ApaLI	GTGCAC	1 cut(s)	527
ApeKI	GCWGC	2 cut(s)	359, 453
ApoI	RAATTY	4 cut(s)	58, 68, 102, 939
AseI	ATTAAT	3 cut(s)	264, 353, 752
Asp700I	GAANNNNTTC	1 cut(s)	446
AspS9I	GGNCC	2 cut(s)	650, 717
AsuC2I	CCSGG	2 cut(s)	388, 436
AsuHPI	GGTGA	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	717
AxyI	CCTNAGG	1 cut(s)	471
BaeGI	GKGCMC	2 cut(s)	531, 787
BarI	GAAGNNNNNNTAC	2 cut(s)	807, 839
BbsI	GAAGAC	1 cut(s)	593
Bbv12I	GWGCWC	2 cut(s)	531, 920
BbvI	GCAGC	2 cut(s)	371, 465
BccI	CCATC	1 cut(s)	606
BcnI	CCSGG	2 cut(s)	388, 436
BcoDI	GTCTC	2 cut(s)	210, 747
BfaI	CTAG	3 cut(s)	321, 405, 462
BisI	GCNGC	2 cut(s)	360, 454
BlsI	GCNGC	2 cut(s)	361, 455
BmcAI	AGTACT	1 cut(s)	796
Bme1390I	CCNGG	2 cut(s)	388, 436
Bme18I	GGWCC	1 cut(s)	717
BmgT120I	GGNCC	2 cut(s)	650, 717
BmrFI	CCNGG	2 cut(s)	388, 436
BmsI	GCATC	3 cut(s)	33, 598, 620
BpiI	GAAGAC	1 cut(s)	593
BpmI	CTGGAG	2 cut(s)	230, 490
Bpu10I	CCTNAGC	1 cut(s)	184
BpuEI	CTTGAG	2 cut(s)	502, 946
BpuMI	CCSGG	2 cut(s)	388, 436
BsaAI	YACGTR	1 cut(s)	605
BsaJI	CCNNGG	2 cut(s)	108, 434
BsaWI	WCCGGW	1 cut(s)	658
Bsc4I	CCNNNNNNNGG	3 cut(s)	833, 929, 930
Bse1I	ACTGG	2 cut(s)	184, 507
Bse21I	CCTNAGG	1 cut(s)	471
BseAI	TCCGGA	1 cut(s)	658
BseDI	CCNNGG	2 cut(s)	108, 434
BseGI	GGATG	4 cut(s)	91, 556, 769, 960
BseLI	CCNNNNNNNGG	3 cut(s)	833, 929, 930
BseMII	CTCAG	2 cut(s)	268, 672
BseNI	ACTGG	2 cut(s)	184, 507
BseRI	GAGGAG	1 cut(s)	242
BseSI	GKGCMC	2 cut(s)	531, 787
BseXI	GCAGC	2 cut(s)	371, 465
BseYI	CCCAGC	1 cut(s)	647
BsgI	GTGCAG	1 cut(s)	733
BshFI	GGCC	2 cut(s)	652, 696
BsiHKAI	GWGCWC	2 cut(s)	531, 920
BsiSI	CCGG	3 cut(s)	387, 436, 659
BslFI	GGGAC	2 cut(s)	241, 878
BslI	CCNNNNNNNGG	3 cut(s)	833, 929, 930
BsmAI	GTCTC	2 cut(s)	210, 747
BsmFI	GGGAC	2 cut(s)	241, 878
BsnI	GGCC	2 cut(s)	652, 696
Bsp1286I	GDGCHC	3 cut(s)	531, 787, 920
Bsp13I	TCCGGA	1 cut(s)	658
Bsp143I	GATC	5 cut(s)	19, 52, 277, 337, 854
BspACI	CCGC	2 cut(s)	451, 737
BspANI	GGCC	2 cut(s)	652, 696
BspCNI	CTCAG	2 cut(s)	267, 673
BspEI	TCCGGA	1 cut(s)	658
BspPI	GGATC	2 cut(s)	47, 285
BsrI	ACTGG	2 cut(s)	184, 507
BssECI	CCNNGG	2 cut(s)	108, 434
BssMI	GATC	5 cut(s)	19, 52, 277, 337, 854
BssT1I	CCWWGG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	721
BstBAI	YACGTR	1 cut(s)	605
BstDEI	CTNAG	4 cut(s)	184, 254, 471, 681
BstEII	GGTNACC	1 cut(s)	314
BstF5I	GGATG	4 cut(s)	91, 556, 769, 960
BstKTI	GATC	5 cut(s)	22, 55, 280, 340, 857
BstMAI	GTCTC	2 cut(s)	210, 747
BstMBI	GATC	5 cut(s)	19, 52, 277, 337, 854
BstNSI	RCATGY	2 cut(s)	234, 571
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	386, 434
BstSLI	GKGCMC	2 cut(s)	531, 787
BstV1I	GCAGC	2 cut(s)	371, 465
BstV2I	GAAGAC	1 cut(s)	593
Bsu36I	CCTNAGG	1 cut(s)	471
BsuRI	GGCC	2 cut(s)	652, 696
BtsCI	GGATG	4 cut(s)	91, 556, 769, 960
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
CaiI	CAGNNNCTG	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	650, 717
Csp6I	GTAC	2 cut(s)	177, 795
CviAII	CATG	7 cut(s)	164, 231, 498, 568, 887, 899, 905
CviQI	GTAC	2 cut(s)	177, 795
DdeI	CTNAG	4 cut(s)	184, 254, 471, 681
DpnI	GATC	5 cut(s)	21, 54, 279, 339, 856
DpnII	GATC	5 cut(s)	19, 52, 277, 337, 854
Eco130I	CCWWGG	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	696
Eco47I	GGWCC	1 cut(s)	717
Eco57I	CTGAAG	2 cut(s)	220, 431
Eco81I	CCTNAGG	1 cut(s)	471
Eco91I	GGTNACC	1 cut(s)	314
EcoO65I	GGTNACC	1 cut(s)	314
EcoRI	GAATTC	1 cut(s)	102
EcoT14I	CCWWGG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	613
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	7 cut(s)	167, 234, 501, 571, 890, 902, 908
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FaqI	GGGAC	2 cut(s)	241, 878
FatI	CATG	7 cut(s)	163, 230, 497, 567, 886, 898, 904
Fnu4HI	GCNGC	2 cut(s)	360, 454
FokI	GGATG	3 cut(s)	98, 563, 776
Fsp4HI	GCNGC	2 cut(s)	360, 454
FspBI	CTAG	3 cut(s)	321, 405, 462
GluI	GCNGC	2 cut(s)	360, 454
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	2 cut(s)	230, 490
HaeIII	GGCC	2 cut(s)	652, 696
HapII	CCGG	3 cut(s)	387, 436, 659
Hin1II	CATG	7 cut(s)	167, 234, 501, 571, 890, 902, 908
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HpaII	CCGG	3 cut(s)	387, 436, 659
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	393, 529
Hpy188I	TCNGA	4 cut(s)	257, 411, 915, 968
Hpy188III	TCNNGA	3 cut(s)	209, 659, 827
Hpy8I	GTNNAC	2 cut(s)	393, 529
HpyAV	CCTTC	2 cut(s)	164, 707
HpyCH4III	ACNGT	1 cut(s)	721
HpyCH4IV	ACGT	2 cut(s)	557, 604
HpyCH4V	TGCA	6 cut(s)	380, 501, 529, 611, 714, 842
HpyF3I	CTNAG	4 cut(s)	184, 254, 471, 681
HpySE526I	ACGT	2 cut(s)	557, 604
Hsp92II	CATG	7 cut(s)	167, 234, 501, 571, 890, 902, 908
Kpn2I	TCCGGA	1 cut(s)	658
Kzo9I	GATC	5 cut(s)	19, 52, 277, 337, 854
LmnI	GCTCC	1 cut(s)	515
Lsp1109I	GCAGC	2 cut(s)	371, 465
LweI	GCATC	3 cut(s)	33, 598, 620
MaeI	CTAG	3 cut(s)	321, 405, 462
MaeII	ACGT	2 cut(s)	557, 604
MaeIII	GTNAC	2 cut(s)	314, 676
MalI	GATC	5 cut(s)	21, 54, 279, 339, 856
MboI	GATC	5 cut(s)	19, 52, 277, 337, 854
MboII	GAAGA	1 cut(s)	598
MfeI	CAATTG	1 cut(s)	344
MhlI	GDGCHC	3 cut(s)	531, 787, 920
MluCI	AATT	9 cut(s)	14, 58, 68, 102, 287, 305, 344, 662, 939
MnlI	CCTC	8 cut(s)	73, 90, 167, 263, 305, 517, 686, 945
Mph1103I	ATGCAT	1 cut(s)	613
MroI	TCCGGA	1 cut(s)	658
MroXI	GAANNNNTTC	1 cut(s)	446
MseI	TTAA	6 cut(s)	243, 264, 353, 536, 582, 752
MslI	CAYNNNNRTG	2 cut(s)	603, 903
MspI	CCGG	3 cut(s)	387, 436, 659
MspR9I	CCNGG	2 cut(s)	388, 436
MunI	CAATTG	1 cut(s)	344
NciI	CCSGG	2 cut(s)	388, 436
NdeII	GATC	5 cut(s)	19, 52, 277, 337, 854
NlaIII	CATG	7 cut(s)	167, 234, 501, 571, 890, 902, 908
NmuCI	GTSAC	1 cut(s)	314
NsiI	ATGCAT	1 cut(s)	613
NspI	RCATGY	2 cut(s)	234, 571
PceI	AGGCCT	1 cut(s)	696
PdmI	GAANNNNTTC	1 cut(s)	446
PflMI	CCANNNNNTGG	1 cut(s)	833
PkrI	GCNGC	2 cut(s)	361, 455
Ppu21I	YACGTR	1 cut(s)	605
PshBI	ATTAAT	3 cut(s)	264, 353, 752
PspEI	GGTNACC	1 cut(s)	314
PspFI	CCCAGC	1 cut(s)	647
PspPI	GGNCC	2 cut(s)	650, 717
PstNI	CAGNNNCTG	1 cut(s)	208
RsaI	GTAC	2 cut(s)	178, 796
RsaNI	GTAC	2 cut(s)	177, 795
RseI	CAYNNNNRTG	2 cut(s)	603, 903
SaqAI	TTAA	6 cut(s)	243, 264, 353, 536, 582, 752
SatI	GCNGC	2 cut(s)	360, 454
Sau3AI	GATC	5 cut(s)	19, 52, 277, 337, 854
Sau96I	GGNCC	2 cut(s)	650, 717
ScaI	AGTACT	1 cut(s)	796
ScrFI	CCNGG	2 cut(s)	388, 436
SduI	GDGCHC	3 cut(s)	531, 787, 920
SfaNI	GCATC	3 cut(s)	33, 598, 620
SinI	GGWCC	1 cut(s)	717
SmiMI	CAYNNNNRTG	2 cut(s)	603, 903
SmlI	CTYRAG	2 cut(s)	481, 925
SmoI	CTYRAG	2 cut(s)	481, 925
Sse9I	AATT	9 cut(s)	14, 58, 68, 102, 287, 305, 344, 662, 939
SseBI	AGGCCT	1 cut(s)	696
SsiI	CCGC	2 cut(s)	451, 737
SspMI	CTAG	3 cut(s)	321, 405, 462
StuI	AGGCCT	1 cut(s)	696
StyD4I	CCNGG	2 cut(s)	386, 434
StyI	CCWWGG	1 cut(s)	108
TaaI	ACNGT	1 cut(s)	721
TaiI	ACGT	2 cut(s)	560, 607
TasI	AATT	9 cut(s)	14, 58, 68, 102, 287, 305, 344, 662, 939
TatI	WGTACW	1 cut(s)	794
Tru1I	TTAA	6 cut(s)	243, 264, 353, 536, 582, 752
Tru9I	TTAA	6 cut(s)	243, 264, 353, 536, 582, 752
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	2 cut(s)	359, 453
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	3 cut(s)	567, 779, 915
TspRI	CASTG	1 cut(s)	39
Van91I	CCANNNNNTGG	1 cut(s)	833
VneI	GTGCAC	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	717
VspI	ATTAAT	3 cut(s)	264, 353, 752
XapI	RAATTY	4 cut(s)	58, 68, 102, 939
XceI	RCATGY	2 cut(s)	234, 571
XmnI	GAANNNNTTC	1 cut(s)	446
XspI	CTAG	3 cut(s)	321, 405, 462
ZrmI	AGTACT	1 cut(s)	796
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.