Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Reverse (-)

67662000 .. 67663831

Gene Structure 1832 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00217140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGCTGGGTGCTGCCAAACGGGAGATTCAACTTTGCACCAAACTCATAAGACAGAATGAGGCAACTCGACAAGCTGAGACAAAGAGTATGAACAAATCTGATGCAATTACAAGTGCAAGCCATGATGTTCGTAATGCTCTTGCTTGCATGACTGAATTGATCAAAATATCCTTTGATGAAGTTGCCCAAGGCTCTGAAATAAGGGAATATCTGACACAAATGGATGCATGTACAAAAGACCTCTTAGGTATGTTGAACTCTATTCTTGATAAAAGCAAAATTGAAGTGGGTAAGATGGTACTTGAAGACGAAGAGTTTGACATATCGCGACTTGTTAAGGAGGTAGTTGATTTCCTTCTTCCATCGGGTTTAAAGAAGGGGATAGATGTGGTGTTGGATCCTCATGATTGCTCTCTTCTAAAGTTTGCACATGTGAAAGGTGACAAGGGAAGGCTTAAACAGATATTATGCAACTTATTAGGGAATGCTGTCAAATTTACTTCAGAGGGACATGTAACAGTCCGTGCTTGGGTTCAGAAACCTAGTTTCATGAATTCAATCACTGCTGCTAATTCTGATTTGAATTATAGTTTCTTGAAGCATTTGTTTTGTTTTTTGAACTACAAGAACATGACCAAAGAACAATTAGATGGCATCAAAGCAGTGAAGGGGTTCAAAATGATCCAAATTTTTTGGAATTTGTTTTTGAGGTGGATGGTACAGGGAGGGGAATTCCCAAGAAGAAGCAAAAAGAAGTGTTTGAAAACTATGTTCAAGTCAAAGAAAAAGCTCATGGAGAAGGAGGTACGCTTGATGCACGGAGAAATAGGAACTGTGGACAAGGAGATTGGTGAAAAAGGGACATGCTTCAGAGATCAACAATTGGGATTAATAGCAGCTATACGCACACCAAATGCAAACTCCGGGTTGACCATAGTTCCTAGTCTGAAGCTCACACCACTTGGAAGACCCTGGTTGAATGTATTCCGCAGCACTCCTAGTAGTCCTAAGGTAGAGGAATCCATTGTTGTACTGCTGATTAAAAATGAAGAGCGACGGAGAATAGTACACCAGTTCATGAAGGACTGCTTGAGGAAATCTACATCATGCAACTCCAGTAATGGAGCAAAGGAGGTGCACCCTTTAATGAGTGCTATGGATGAAACGTATAACAACATGCTCTCTCTGTTTAAGAAGACGACTACCAATTTTAGTGGTGCATCCGCCTTTATATTGCTAGTGATAGATACGACAGCTGGACCATATCTGCAATTATGTAAGATTATAACTGAGTTCAAAAGAGGGCTTCAAAATGCTTGGTGCAGGACCGTTTGGTTAGAAATCCGCAGTCTCATAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

453

Amino Acids

51.25

Weight (kDa)

9.37

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1286
AccII	CGCG	1 cut(s)	328
AciI	CCGC	3 cut(s)	988, 1224, 1345
AclWI	GGATC	3 cut(s)	392, 405, 676
AcsI	RAATTY	5 cut(s)	494, 553, 687, 697, 731
AcuI	CTGAAG	3 cut(s)	486, 853, 968
AfaI	GTAC	6 cut(s)	232, 300, 720, 807, 1032, 1068
AfiI	CCNNNNNNNGG	1 cut(s)	529
AflIII	ACRYGT	2 cut(s)	430, 511
AjnI	CCWGG	1 cut(s)	971
AluBI	AGCT	5 cut(s)	74, 790, 899, 952, 1256
AluI	AGCT	5 cut(s)	74, 790, 899, 952, 1256
Alw21I	GWGCWC	1 cut(s)	1140
Alw26I	GTCTC	2 cut(s)	71, 1355
Alw44I	GTGCAC	1 cut(s)	1136
AlwI	GGATC	3 cut(s)	392, 405, 676
ApaLI	GTGCAC	1 cut(s)	1136
ApeKI	GCWGC	4 cut(s)	11, 566, 896, 990
ApoI	RAATTY	5 cut(s)	494, 553, 687, 697, 731
ArsI	GACNNNNNNTTYG	2 cut(s)	299, 331
AseI	ATTAAT	1 cut(s)	890
Asp700I	GAANNNNTTC	2 cut(s)	671, 983
AspS9I	GGNCC	2 cut(s)	1259, 1326
AsuC2I	CCSGG	1 cut(s)	925
AsuHPI	GGTGA	2 cut(s)	452, 863
AvaII	GGWCC	2 cut(s)	1259, 1326
AxyI	CCTNAGG	1 cut(s)	1008
BaeGI	GKGCMC	1 cut(s)	1140
BamHI	GGATCC	1 cut(s)	397
BbsI	GAAGAC	3 cut(s)	312, 973, 1202
Bbv12I	GWGCWC	1 cut(s)	1140
BbvI	GCAGC	3 cut(s)	553, 908, 1002
BccI	CCATC	4 cut(s)	289, 370, 644, 709
BciT130I	CCWGG	1 cut(s)	973
BclI	TGATCA	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	925
BcoDI	GTCTC	2 cut(s)	71, 1355
BfaI	CTAG	4 cut(s)	543, 942, 999, 1238
BisI	GCNGC	4 cut(s)	12, 567, 897, 991
BlsI	GCNGC	4 cut(s)	13, 568, 898, 992
Bme1390I	CCNGG	2 cut(s)	925, 973
Bme18I	GGWCC	2 cut(s)	1259, 1326
BmgT120I	GGNCC	2 cut(s)	1259, 1326
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	2 cut(s)	925, 973
BmsI	GCATC	5 cut(s)	91, 214, 663, 804, 1229
BpiI	GAAGAC	3 cut(s)	312, 973, 1202
BpmI	CTGGAG	1 cut(s)	1099
BpuEI	CTTGAG	1 cut(s)	1111
BpuMI	CCSGG	1 cut(s)	925
BsaJI	CCNNGG	2 cut(s)	187, 971
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse1I	ACTGG	2 cut(s)	1072, 1116
Bse21I	CCTNAGG	1 cut(s)	1008
BseBI	CCWGG	1 cut(s)	973
BseDI	CCNNGG	2 cut(s)	187, 971
BseGI	GGATG	4 cut(s)	229, 720, 1165, 1220
BseLI	CCNNNNNNNGG	1 cut(s)	529
BseMII	CTCAG	2 cut(s)	66, 1281
BseNI	ACTGG	2 cut(s)	1072, 1116
BseSI	GKGCMC	1 cut(s)	1140
BseXI	GCAGC	3 cut(s)	553, 908, 1002
BseYI	CCCAGC	1 cut(s)	4
BsgI	GTGCAG	1 cut(s)	1342
Bsh1236I	CGCG	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	1140
BsiSI	CCGG	1 cut(s)	924
BslFI	GGGAC	2 cut(s)	522, 874
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	2 cut(s)	71, 1355
BsmFI	GGGAC	2 cut(s)	522, 874
BsmI	GAATGC	1 cut(s)	490
Bsp1286I	GDGCHC	1 cut(s)	1140
Bsp1407I	TGTACA	1 cut(s)	230
Bsp143I	GATC	4 cut(s)	159, 397, 681, 874
Bsp68I	TCGCGA	1 cut(s)	328
BspACI	CCGC	3 cut(s)	988, 1224, 1345
BspCNI	CTCAG	2 cut(s)	67, 1282
BspFNI	CGCG	1 cut(s)	328
BspHI	TCATGA	3 cut(s)	403, 549, 1077
BspLI	GGNNCC	1 cut(s)	399
BspPI	GGATC	3 cut(s)	392, 405, 676
BspQI	GCTCTTC	1 cut(s)	1044
BsrGI	TGTACA	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	1072, 1116
BssECI	CCNNGG	2 cut(s)	187, 971
BssMI	GATC	4 cut(s)	159, 397, 681, 874
BssT1I	CCWWGG	1 cut(s)	187
Bst2UI	CCWGG	1 cut(s)	973
Bst4CI	ACNGT	3 cut(s)	520, 835, 1330
Bst6I	CTCTTC	3 cut(s)	306, 420, 1044
BstAUI	TGTACA	1 cut(s)	230
BstC8I	GCNNGC	2 cut(s)	118, 145
BstDEI	CTNAG	4 cut(s)	75, 244, 1008, 1290
BstF5I	GGATG	4 cut(s)	229, 720, 1165, 1220
BstFNI	CGCG	1 cut(s)	328
BstKTI	GATC	4 cut(s)	162, 400, 684, 877
BstMAI	GTCTC	2 cut(s)	71, 1355
BstMBI	GATC	4 cut(s)	159, 397, 681, 874
BstNI	CCWGG	1 cut(s)	973
BstNSI	RCATGY	5 cut(s)	231, 434, 515, 867, 1180
BstSCI	CCNGG	2 cut(s)	923, 971
BstSLI	GKGCMC	1 cut(s)	1140
BstUI	CGCG	1 cut(s)	328
BstV1I	GCAGC	3 cut(s)	553, 908, 1002
BstV2I	GAAGAC	3 cut(s)	312, 973, 1202
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
Bsu36I	CCTNAGG	1 cut(s)	1008
BtsCI	GGATG	4 cut(s)	229, 720, 1165, 1220
BtsI	GCAGTG	2 cut(s)	561, 669
BtsIMutI	CAGTG	2 cut(s)	561, 669
BtuMI	TCGCGA	1 cut(s)	328
Cac8I	GCNNGC	2 cut(s)	118, 145
CciI	TCATGA	3 cut(s)	403, 549, 1077
Cfr13I	GGNCC	2 cut(s)	1259, 1326
Csp6I	GTAC	6 cut(s)	231, 299, 719, 806, 1031, 1067
CspCI	CAANNNNNGTGG	2 cut(s)	1195, 1230
CviJI	RGCY	9 cut(s)	74, 120, 192, 454, 790, 899, 952, 1256, 1306
CviKI_1	RGCY	9 cut(s)	74, 120, 192, 454, 790, 899, 952, 1256, 1306
CviQI	GTAC	6 cut(s)	231, 299, 719, 806, 1031, 1067
DdeI	CTNAG	4 cut(s)	75, 244, 1008, 1290
DpnI	GATC	4 cut(s)	161, 399, 683, 876
DpnII	GATC	4 cut(s)	159, 397, 681, 874
DraI	TTTAAA	1 cut(s)	372
Eam1104I	CTCTTC	3 cut(s)	306, 420, 1044
EarI	CTCTTC	3 cut(s)	306, 420, 1044
EciI	GGCGGA	1 cut(s)	1213
Eco130I	CCWWGG	1 cut(s)	187
Eco47I	GGWCC	2 cut(s)	1259, 1326
Eco57I	CTGAAG	3 cut(s)	486, 853, 968
Eco81I	CCTNAGG	1 cut(s)	1008
EcoRI	GAATTC	2 cut(s)	553, 731
EcoRII	CCWGG	1 cut(s)	971
EcoT14I	CCWWGG	1 cut(s)	187
EcoT22I	ATGCAT	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	187
FalI	AAGNNNNNCTT	2 cut(s)	1073, 1105
FaqI	GGGAC	2 cut(s)	522, 874
FbaI	TGATCA	1 cut(s)	159
Fnu4HI	GCNGC	4 cut(s)	12, 567, 897, 991
FokI	GGATG	4 cut(s)	236, 727, 1172, 1207
Fsp4HI	GCNGC	4 cut(s)	12, 567, 897, 991
FspBI	CTAG	4 cut(s)	543, 942, 999, 1238
GluI	GCNGC	4 cut(s)	12, 567, 897, 991
GsaI	CCCAGC	1 cut(s)	8
GsuI	CTGGAG	1 cut(s)	1099
HapII	CCGG	1 cut(s)	924
HincII	GTYRAC	1 cut(s)	930
HindII	GTYRAC	1 cut(s)	930
HinfI	GANTC	2 cut(s)	25, 1019
HpaII	CCGG	1 cut(s)	924
HphI	GGTGA	2 cut(s)	452, 863
Hpy166II	GTNNAC	4 cut(s)	838, 930, 1069, 1138
Hpy188I	TCNGA	8 cut(s)	100, 196, 213, 505, 537, 577, 872, 948
Hpy188III	TCNNGA	6 cut(s)	266, 327, 404, 550, 595, 1078
Hpy8I	GTNNAC	4 cut(s)	838, 930, 1069, 1138
Hpy99I	CGWCG	1 cut(s)	1059
HpyAV	CCTTC	6 cut(s)	365, 370, 444, 661, 793, 1075
HpyCH4III	ACNGT	3 cut(s)	520, 835, 1330
HpyCH4IV	ACGT	1 cut(s)	1166
HpyF3I	CTNAG	4 cut(s)	75, 244, 1008, 1290
HpySE526I	ACGT	1 cut(s)	1166
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	4 cut(s)	159, 397, 681, 874
LguI	GCTCTTC	1 cut(s)	1044
LmnI	GCTCC	1 cut(s)	1124
LpnPI	CCDG	8 cut(s)	707, 937, 958, 985, 1085, 1129, 1242, 1309
Lsp1109I	GCAGC	3 cut(s)	553, 908, 1002
LweI	GCATC	5 cut(s)	91, 214, 663, 804, 1229
MaeI	CTAG	4 cut(s)	543, 942, 999, 1238
MaeII	ACGT	1 cut(s)	1166
MaeIII	GTNAC	2 cut(s)	440, 514
MalI	GATC	4 cut(s)	161, 399, 683, 876
MboI	GATC	4 cut(s)	159, 397, 681, 874
MboII	GAAGA	8 cut(s)	317, 323, 350, 407, 753, 978, 1061, 1207
MfeI	CAATTG	1 cut(s)	881
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	1140
MmeI	TCCRAC	1 cut(s)	375
Mph1103I	ATGCAT	1 cut(s)	229
MroXI	GAANNNNTTC	2 cut(s)	671, 983
MseI	TTAA	8 cut(s)	336, 371, 456, 890, 1041, 1145, 1191, 1360
MspA1I	CMGCKG	1 cut(s)	1256
MspI	CCGG	1 cut(s)	924
MspR9I	CCNGG	2 cut(s)	925, 973
MunI	CAATTG	1 cut(s)	881
Mva1269I	GAATGC	1 cut(s)	490
MvaI	CCWGG	1 cut(s)	973
MvnI	CGCG	1 cut(s)	328
NciI	CCSGG	1 cut(s)	925
NdeII	GATC	4 cut(s)	159, 397, 681, 874
NlaIV	GGNNCC	1 cut(s)	399
NmuCI	GTSAC	1 cut(s)	440
NruI	TCGCGA	1 cut(s)	328
NsiI	ATGCAT	1 cut(s)	229
NspI	RCATGY	5 cut(s)	231, 434, 515, 867, 1180
PagI	TCATGA	3 cut(s)	403, 549, 1077
PciI	ACATGT	2 cut(s)	430, 511
PciSI	GCTCTTC	1 cut(s)	1044
PctI	GAATGC	1 cut(s)	490
PdmI	GAANNNNTTC	2 cut(s)	671, 983
PfeI	GAWTC	2 cut(s)	25, 1019
PkrI	GCNGC	4 cut(s)	13, 568, 898, 992
PscI	ACATGT	2 cut(s)	430, 511
PshBI	ATTAAT	1 cut(s)	890
PsiI	TTATAA	1 cut(s)	1286
Psp6I	CCWGG	1 cut(s)	971
PspFI	CCCAGC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	971
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	2 cut(s)	1259, 1326
PsuI	RGATCY	1 cut(s)	397
PvuII	CAGCTG	1 cut(s)	1256
RruI	TCGCGA	1 cut(s)	328
RsaI	GTAC	6 cut(s)	232, 300, 720, 807, 1032, 1068
RsaNI	GTAC	6 cut(s)	231, 299, 719, 806, 1031, 1067
SapI	GCTCTTC	1 cut(s)	1044
SaqAI	TTAA	8 cut(s)	336, 371, 456, 890, 1041, 1145, 1191, 1360
SatI	GCNGC	4 cut(s)	12, 567, 897, 991
Sau3AI	GATC	4 cut(s)	159, 397, 681, 874
Sau96I	GGNCC	2 cut(s)	1259, 1326
ScrFI	CCNGG	2 cut(s)	925, 973
SduI	GDGCHC	1 cut(s)	1140
SfaNI	GCATC	5 cut(s)	91, 214, 663, 804, 1229
SinI	GGWCC	2 cut(s)	1259, 1326
SmlI	CTYRAG	1 cut(s)	1090
SmoI	CTYRAG	1 cut(s)	1090
SsiI	CCGC	3 cut(s)	988, 1224, 1345
SspMI	CTAG	4 cut(s)	543, 942, 999, 1238
StyD4I	CCNGG	2 cut(s)	923, 971
StyI	CCWWGG	1 cut(s)	187
TaaI	ACNGT	3 cut(s)	520, 835, 1330
TaiI	ACGT	1 cut(s)	1169
TaqI	TCGA	1 cut(s)	67
TatI	WGTACW	3 cut(s)	230, 1030, 1066
TfiI	GAWTC	2 cut(s)	25, 1019
Tru1I	TTAA	8 cut(s)	336, 371, 456, 890, 1041, 1145, 1191, 1360
Tru9I	TTAA	8 cut(s)	336, 371, 456, 890, 1041, 1145, 1191, 1360
TscAI	CASTG	2 cut(s)	568, 669
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	4 cut(s)	11, 566, 896, 990
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	8 cut(s)	104, 192, 538, 566, 1062, 1066, 1094, 1176
TspGWI	ACGGA	3 cut(s)	512, 834, 1072
TspRI	CASTG	2 cut(s)	568, 669
VneI	GTGCAC	1 cut(s)	1136
VpaK11BI	GGWCC	2 cut(s)	1259, 1326
VspI	ATTAAT	1 cut(s)	890
XapI	RAATTY	5 cut(s)	494, 553, 687, 697, 731
XceI	RCATGY	5 cut(s)	231, 434, 515, 867, 1180
XmnI	GAANNNNTTC	2 cut(s)	671, 983
XspI	CTAG	4 cut(s)	543, 942, 999, 1238
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.