Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Forward (+)

1253637 .. 1254291

Gene Structure 655 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G000800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGACCAAAGAACAATTAGATGGCATCAAAGCAGTGAAGGGGGTTCAAAATGATCCAAATTTTTTGGAATTTGTTTTTGAGGTGGATGGTACAGGGAGGGTAATTCCCAAGGAGAAGCAAAAAGAAGTGTTTGAAAACTATGTTCAAGTCAAAGAAAAAGCTCATGGAGAAGGAGGTACTGGCTTAGGACCTGGTATTGTTCAGTCTCTGGTATGCTTGATGCACGGAGAAATAGGAATTGTGGACAAGGAGATTGGTGAAAAAGGGACATGCTTCAGGTTTAATGTTCTCCTGAGAGCTATTAATGTGTATGAGGATCATATAAAATTACAACAAGACCTTGAATTGGGAGGTGACCCTAATTATGATGACAGAGATCAACAATTGGGATTAATAGCAGCTATACGCACACCAAATGCAAACTCCGGGTTGACCATAGTTCCTAGTCTGAAGCTCACACCACTTGGAAGCCCTCGGTTGAATGTATTCCGCAGCACTCCTAGTAATCCTAAGGTAGAGGAATCAGGAATCCATTGTTGTACTGCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

183

Amino Acids

20.01

Weight (kDa)

5.28

Isoelectric Point (pI)

27.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	23 - 97	1.2e-09	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	490
AclWI	GGATC	2 cut(s)	47, 324
AcsI	RAATTY	2 cut(s)	58, 68
AcuI	CTGAAG	2 cut(s)	259, 470
AfaI	GTAC	3 cut(s)	91, 178, 541
AfiI	CCNNNNNNNGG	1 cut(s)	346
AgsI	TTSAA	5 cut(s)	47, 134, 146, 344, 481
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	4 cut(s)	161, 299, 401, 454
AluI	AGCT	4 cut(s)	161, 299, 401, 454
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	2 cut(s)	47, 324
AlwNI	CAGNNNCTG	1 cut(s)	208
ApeKI	GCWGC	2 cut(s)	398, 492
ApoI	RAATTY	2 cut(s)	58, 68
AseI	ATTAAT	2 cut(s)	303, 392
Asp700I	GAANNNNTTC	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	188
AsuC2I	CCSGG	1 cut(s)	427
AsuHPI	GGTGA	2 cut(s)	269, 365
AvaII	GGWCC	1 cut(s)	188
AxyI	CCTNAGG	1 cut(s)	510
BbvI	GCAGC	2 cut(s)	410, 504
BccI	CCATC	2 cut(s)	14, 80
BciT130I	CCWGG	1 cut(s)	192
BcnI	CCSGG	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	2 cut(s)	444, 501
BisI	GCNGC	2 cut(s)	399, 493
BlsI	GCNGC	2 cut(s)	400, 494
Bme1390I	CCNGG	2 cut(s)	192, 427
Bme18I	GGWCC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	188
BmrFI	CCNGG	2 cut(s)	192, 427
BmsI	GCATC	2 cut(s)	33, 210
Bpu10I	CCTNAGC	1 cut(s)	184
BpuMI	CCSGG	1 cut(s)	427
BsaJI	CCNNGG	2 cut(s)	108, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	346
Bse1I	ACTGG	1 cut(s)	184
Bse21I	CCTNAGG	1 cut(s)	510
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	108, 473
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	184
BseXI	GCAGC	2 cut(s)	410, 504
BsiSI	CCGG	1 cut(s)	426
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	280
Bsp143I	GATC	3 cut(s)	52, 316, 376
BspACI	CCGC	1 cut(s)	490
BspCNI	CTCAG	1 cut(s)	285
BspPI	GGATC	2 cut(s)	47, 324
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	108, 473
BssMI	GATC	3 cut(s)	52, 316, 376
BssT1I	CCWWGG	1 cut(s)	108
Bst2UI	CCWGG	1 cut(s)	192
BstDEI	CTNAG	3 cut(s)	184, 293, 510
BstEII	GGTNACC	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	91
BstKTI	GATC	3 cut(s)	55, 319, 379
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	3 cut(s)	52, 316, 376
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	273
BstPI	GGTNACC	1 cut(s)	353
BstSCI	CCNGG	2 cut(s)	190, 425
BstV1I	GCAGC	2 cut(s)	410, 504
Bsu36I	CCTNAGG	1 cut(s)	510
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
CaiI	CAGNNNCTG	1 cut(s)	208
Cfr13I	GGNCC	1 cut(s)	188
CsiI	ACCWGGT	1 cut(s)	190
Csp6I	GTAC	3 cut(s)	90, 177, 540
CviAII	CATG	2 cut(s)	164, 270
CviJI	RGCY	6 cut(s)	161, 183, 299, 401, 454, 471
CviKI_1	RGCY	6 cut(s)	161, 183, 299, 401, 454, 471
CviQI	GTAC	3 cut(s)	90, 177, 540
DdeI	CTNAG	3 cut(s)	184, 293, 510
DpnI	GATC	3 cut(s)	54, 318, 378
DpnII	GATC	3 cut(s)	52, 316, 376
Eco130I	CCWWGG	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	188
Eco57I	CTGAAG	2 cut(s)	259, 470
Eco81I	CCTNAGG	1 cut(s)	510
Eco91I	GGTNACC	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	188
EcoO65I	GGTNACC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	190
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	167, 273
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	2 cut(s)	163, 269
Fnu4HI	GCNGC	2 cut(s)	399, 493
FokI	GGATG	1 cut(s)	98
Fsp4HI	GCNGC	2 cut(s)	399, 493
FspBI	CTAG	2 cut(s)	444, 501
GluI	GCNGC	2 cut(s)	399, 493
HapII	CCGG	1 cut(s)	426
Hin1II	CATG	2 cut(s)	167, 273
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	2 cut(s)	521, 528
HpaII	CCGG	1 cut(s)	426
HphI	GGTGA	2 cut(s)	269, 365
Hpy166II	GTNNAC	2 cut(s)	244, 432
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	2 cut(s)	292, 525
Hpy8I	GTNNAC	2 cut(s)	244, 432
HpyAV	CCTTC	2 cut(s)	31, 164
HpyCH4V	TGCA	2 cut(s)	223, 419
HpyF3I	CTNAG	3 cut(s)	184, 293, 510
Hsp92II	CATG	2 cut(s)	167, 273
Kzo9I	GATC	3 cut(s)	52, 316, 376
LpnPI	CCDG	9 cut(s)	78, 165, 177, 194, 204, 262, 305, 439, 510
Lsp1109I	GCAGC	2 cut(s)	410, 504
LweI	GCATC	2 cut(s)	33, 210
MabI	ACCWGGT	1 cut(s)	190
MaeI	CTAG	2 cut(s)	444, 501
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	3 cut(s)	54, 318, 378
MboI	GATC	3 cut(s)	52, 316, 376
MfeI	CAATTG	1 cut(s)	383
MluCI	AATT	9 cut(s)	14, 58, 68, 102, 237, 326, 344, 361, 383
MnlI	CCTC	7 cut(s)	73, 90, 167, 307, 344, 483, 511
MroXI	GAANNNNTTC	1 cut(s)	485
MseI	TTAA	4 cut(s)	282, 303, 392, 550
MspI	CCGG	1 cut(s)	426
MspR9I	CCNGG	2 cut(s)	192, 427
MunI	CAATTG	1 cut(s)	383
MvaI	CCWGG	1 cut(s)	192
NciI	CCSGG	1 cut(s)	427
NdeII	GATC	3 cut(s)	52, 316, 376
NlaIII	CATG	2 cut(s)	167, 273
NmuCI	GTSAC	1 cut(s)	353
NspI	RCATGY	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	485
PfeI	GAWTC	2 cut(s)	521, 528
PkrI	GCNGC	2 cut(s)	400, 494
PpuMI	RGGWCCY	1 cut(s)	188
PshBI	ATTAAT	2 cut(s)	303, 392
Psp5II	RGGWCCY	1 cut(s)	188
Psp6I	CCWGG	1 cut(s)	190
PspEI	GGTNACC	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	190
PspPI	GGNCC	1 cut(s)	188
PspPPI	RGGWCCY	1 cut(s)	188
PstNI	CAGNNNCTG	1 cut(s)	208
RsaI	GTAC	3 cut(s)	91, 178, 541
RsaNI	GTAC	3 cut(s)	90, 177, 540
SaqAI	TTAA	4 cut(s)	282, 303, 392, 550
SatI	GCNGC	2 cut(s)	399, 493
Sau3AI	GATC	3 cut(s)	52, 316, 376
Sau96I	GGNCC	1 cut(s)	188
ScrFI	CCNGG	2 cut(s)	192, 427
SexAI	ACCWGGT	1 cut(s)	190
SfaNI	GCATC	2 cut(s)	33, 210
SinI	GGWCC	1 cut(s)	188
Sse9I	AATT	9 cut(s)	14, 58, 68, 102, 237, 326, 344, 361, 383
SsiI	CCGC	1 cut(s)	490
SspMI	CTAG	2 cut(s)	444, 501
StyD4I	CCNGG	2 cut(s)	190, 425
StyI	CCWWGG	1 cut(s)	108
TasI	AATT	9 cut(s)	14, 58, 68, 102, 237, 326, 344, 361, 383
TatI	WGTACW	1 cut(s)	539
TfiI	GAWTC	2 cut(s)	521, 528
Tru1I	TTAA	4 cut(s)	282, 303, 392, 550
Tru9I	TTAA	4 cut(s)	282, 303, 392, 550
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	2 cut(s)	398, 492
Tsp45I	GTSAC	1 cut(s)	353
TspGWI	ACGGA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	188
VspI	ATTAAT	2 cut(s)	303, 392
XapI	RAATTY	2 cut(s)	58, 68
XceI	RCATGY	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	485
XspI	CTAG	2 cut(s)	444, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.