FvH4_5g39350

Multidrug resistance protein ABC transporter family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000934
Physical Location & Seq
Reverse (-)
29067678 .. 29068277
600 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g39350.t1

Sequence Viewer

Length: 600 bp
ATGGGAAATTCCGCGTCAAACAAGCAAGTCCATGGCACTGGAAAAGTCGTACTGTCGGATGGGTCGGTGCAGGAGTTCGATAAGCATGATCTAACAGTTGCTGAGCTGATGCTAGAGTATCCACAACAAGTAGTGGTCGAATTTCGAGCAGCTGTCTCAGGAAAAAGACCATCTCCATTGCCTGCAGATACGAAGCTCGACACGAAAAAGGTTTACTTAATGCTTCCAATGAAGCGAGGAAAGCCATTGTCATTGTCATCCGAAGATATTCGCGGCGTACTTTCAAGTGCAAATTCACTTTTAAGGTCAAGGTCATCGTCACTCAAGTTCTTGCCTCTGTTTGCAAGGATATGCCCTGCAGGAGATGCACATGCTTTTGTGTTTCCAAAGAAGGAATATAGCATGGAGAGGACGTCAGACTCGGAGGTGGTGAGGCCCTATGTGCCGGAGTTTGACTTGGAGGAAAGCTTGGATGCGAGGCCAGAATTTTTGACTAGGCAGCTTTCCGGCAAGGCTACTTGGAAGCCTAATTTGGATACCATTAAGGAGAAGAAGGTTGAGAAGAAGTTGTCTCATTGGCGCCTTACGTTCAAGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4228

Protein Analysis

200

Amino Acids

22.45

Weight (kDa)

9.45

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PADRE PF14009 1 - 183 7.9e-25 PADRE domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 416
AccB1I GGYRCC 1 cut(s) 579
AccII CGCG 2 cut(s) 14, 273
AciI CCGC 2 cut(s) 12, 273
AcsI RAATTY 4 cut(s) 7, 140, 292, 485
AcyI GRCGYC 2 cut(s) 413, 580
AfaI GTAC 2 cut(s) 51, 279
AgsI TTSAA 2 cut(s) 285, 592
AjuI GAANNNNNNNTTGG 2 cut(s) 515, 547
AluBI AGCT 5 cut(s) 106, 152, 196, 468, 502
AluI AGCT 5 cut(s) 106, 152, 196, 468, 502
Alw26I GTCTC 2 cut(s) 160, 576
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 2 cut(s) 434, 479
ApeKI GCWGC 2 cut(s) 149, 499
ApoI RAATTY 4 cut(s) 7, 140, 292, 485
Asp700I GAANNNNTTC 1 cut(s) 267
AspLEI GCGC 1 cut(s) 582
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 1 cut(s) 442
BanI GGYRCC 1 cut(s) 579
BbvI GCAGC 2 cut(s) 161, 511
BccI CCATC 2 cut(s) 53, 178
BciVI GTATCC 2 cut(s) 129, 529
BcoDI GTCTC 2 cut(s) 160, 576
BfaI CTAG 2 cut(s) 113, 495
BfmI CTRYAG 2 cut(s) 183, 357
BfoI RGCGCY 1 cut(s) 583
BfuI GTATCC 2 cut(s) 129, 529
BisI GCNGC 3 cut(s) 150, 274, 500
BlpI GCTNAGC 1 cut(s) 102
BlsI GCNGC 3 cut(s) 151, 275, 501
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 1 cut(s) 581
BmsI GCATC 3 cut(s) 99, 355, 463
Bpu1102I GCTNAGC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 308
BsaHI GRCGYC 2 cut(s) 413, 580
BsaJI CCNNGG 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bse1I ACTGG 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 31
BseGI GGATG 3 cut(s) 64, 257, 478
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 2 cut(s) 93, 171
BseNI ACTGG 1 cut(s) 43
BseXI GCAGC 2 cut(s) 161, 511
BsgI GTGCAG 1 cut(s) 89
Bsh1236I CGCG 2 cut(s) 14, 273
BshFI GGCC 2 cut(s) 436, 481
BshNI GGYRCC 1 cut(s) 579
BsiSI CCGG 2 cut(s) 446, 507
BsmAI GTCTC 2 cut(s) 160, 576
BsnI GGCC 2 cut(s) 436, 481
Bsp143I GATC 1 cut(s) 88
Bsp1720I GCTNAGC 1 cut(s) 102
Bsp19I CCATGG 1 cut(s) 31
BspACI CCGC 2 cut(s) 12, 273
BspANI GGCC 2 cut(s) 436, 481
BspCNI CTCAG 2 cut(s) 94, 170
BspFNI CGCG 2 cut(s) 14, 273
BspLI GGNNCC 1 cut(s) 581
BspMAI CTGCAG 2 cut(s) 187, 361
BspT107I GGYRCC 1 cut(s) 579
BsrDI GCAATG 1 cut(s) 176
BsrI ACTGG 1 cut(s) 43
BssECI CCNNGG 1 cut(s) 31
BssMI GATC 1 cut(s) 88
BssNI GRCGYC 2 cut(s) 413, 580
BssT1I CCWWGG 1 cut(s) 31
Bst4CI ACNGT 2 cut(s) 54, 97
BstACI GRCGYC 2 cut(s) 413, 580
BstAPI GCANNNNNTGC 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 102, 157
BstDSI CCRYGG 1 cut(s) 31
BstF5I GGATG 3 cut(s) 64, 257, 478
BstFNI CGCG 2 cut(s) 14, 273
BstH2I RGCGCY 1 cut(s) 583
BstHHI GCGC 1 cut(s) 582
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 2 cut(s) 160, 576
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 3 cut(s) 241, 365, 442
BstNSI RCATGY 1 cut(s) 374
BstSFI CTRYAG 2 cut(s) 183, 357
BstUI CGCG 2 cut(s) 14, 273
BstV1I GCAGC 2 cut(s) 161, 511
BstXI CCANNNNNNTGG 1 cut(s) 38
BsuI GTATCC 2 cut(s) 129, 529
BsuRI GGCC 2 cut(s) 436, 481
BtgI CCRYGG 1 cut(s) 31
BtsCI GGATG 3 cut(s) 64, 257, 478
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 1 cut(s) 183
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 1 cut(s) 582
Cfr13I GGNCC 1 cut(s) 435
CseI GACGC 1 cut(s) 3
Csp6I GTAC 2 cut(s) 50, 278
CviAII CATG 4 cut(s) 32, 86, 371, 403
CviQI GTAC 2 cut(s) 50, 278
DdeI CTNAG 2 cut(s) 102, 157
DinI GGCGCC 1 cut(s) 581
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eco130I CCWWGG 1 cut(s) 31
EcoO109I RGGNCCY 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 31
EgeI GGCGCC 1 cut(s) 581
EheI GGCGCC 1 cut(s) 581
ErhI CCWWGG 1 cut(s) 31
FaeI CATG 4 cut(s) 35, 89, 374, 406
FaiI YATR 7 cut(s) 33, 87, 352, 372, 399, 404, 441
FalI AAGNNNNNCTT 2 cut(s) 200, 232
FatI CATG 4 cut(s) 31, 85, 370, 402
Fnu4HI GCNGC 3 cut(s) 150, 274, 500
FokI GGATG 3 cut(s) 71, 244, 485
Fsp4HI GCNGC 3 cut(s) 150, 274, 500
FspBI CTAG 2 cut(s) 113, 495
GlaI GCGC 1 cut(s) 581
GluI GCNGC 3 cut(s) 150, 274, 500
HaeII RGCGCY 1 cut(s) 583
HaeIII GGCC 2 cut(s) 436, 481
HapII CCGG 2 cut(s) 446, 507
HgaI GACGC 1 cut(s) 3
HhaI GCGC 1 cut(s) 582
Hin1I GRCGYC 2 cut(s) 413, 580
Hin1II CATG 4 cut(s) 35, 89, 374, 406
Hin6I GCGC 1 cut(s) 580
HinP1I GCGC 1 cut(s) 580
HindIII AAGCTT 1 cut(s) 466
HinfI GANTC 1 cut(s) 419
HpaII CCGG 2 cut(s) 446, 507
HphI GGTGA 1 cut(s) 442
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 4 cut(s) 58, 262, 418, 424
Hpy188III TCNNGA 1 cut(s) 159
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 385, 547
HpyCH4III ACNGT 2 cut(s) 54, 97
HpyCH4IV ACGT 2 cut(s) 413, 587
HpyCH4V TGCA 6 cut(s) 70, 185, 290, 344, 359, 368
HpyF10VI GCNNNNNNNGC 3 cut(s) 241, 365, 442
HpyF3I CTNAG 2 cut(s) 102, 157
HpySE526I ACGT 2 cut(s) 413, 587
Hsp92I GRCGYC 2 cut(s) 413, 580
Hsp92II CATG 4 cut(s) 35, 89, 374, 406
HspAI GCGC 1 cut(s) 580
KasI GGCGCC 1 cut(s) 579
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 9 cut(s) 24, 56, 144, 195, 345, 369, 459, 495, 520
Lsp1109I GCAGC 2 cut(s) 161, 511
LweI GCATC 3 cut(s) 99, 355, 463
MaeI CTAG 2 cut(s) 113, 495
MaeII ACGT 2 cut(s) 413, 587
MaeIII GTNAC 1 cut(s) 318
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 3 cut(s) 275, 562, 574
MluCI AATT 5 cut(s) 7, 140, 292, 485, 529
Mly113I GGCGCC 1 cut(s) 580
MlyI GAGTC 1 cut(s) 413
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 7 cut(s) 230, 345, 402, 418, 426, 454, 471
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 3 cut(s) 218, 302, 543
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 2 cut(s) 446, 507
MvnI CGCG 2 cut(s) 14, 273
MwoI GCNNNNNNNGC 3 cut(s) 241, 365, 442
NarI GGCGCC 1 cut(s) 580
NcoI CCATGG 1 cut(s) 31
NdeII GATC 1 cut(s) 88
NlaIII CATG 4 cut(s) 35, 89, 374, 406
NlaIV GGNNCC 1 cut(s) 581
NmuCI GTSAC 1 cut(s) 318
NspI RCATGY 1 cut(s) 374
PdmI GAANNNNTTC 1 cut(s) 267
PkrI GCNGC 3 cut(s) 151, 275, 501
PleI GAGTC 1 cut(s) 413
PluTI GGCGCC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 413
PspN4I GGNNCC 1 cut(s) 581
PspPI GGNCC 1 cut(s) 435
PstI CTGCAG 2 cut(s) 187, 361
PstNI CAGNNNCTG 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 2 cut(s) 51, 279
RsaNI GTAC 2 cut(s) 50, 278
SaqAI TTAA 3 cut(s) 218, 302, 543
SatI GCNGC 3 cut(s) 150, 274, 500
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 435
SbfI CCTGCAGG 1 cut(s) 361
SchI GAGTC 1 cut(s) 413
SdaI CCTGCAGG 1 cut(s) 361
SfaNI GCATC 3 cut(s) 99, 355, 463
SfcI CTRYAG 2 cut(s) 183, 357
SfoI GGCGCC 1 cut(s) 581
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
Sse8387I CCTGCAGG 1 cut(s) 361
Sse9I AATT 5 cut(s) 7, 140, 292, 485, 529
SsiI CCGC 2 cut(s) 12, 273
SspDI GGCGCC 1 cut(s) 579
SspMI CTAG 2 cut(s) 113, 495
StyI CCWWGG 1 cut(s) 31
TaaI ACNGT 2 cut(s) 54, 97
TaiI ACGT 2 cut(s) 416, 590
TaqI TCGA 4 cut(s) 78, 138, 145, 198
TasI AATT 5 cut(s) 7, 140, 292, 485, 529
TauI GCSGC 1 cut(s) 276
Tru1I TTAA 3 cut(s) 218, 302, 543
Tru9I TTAA 3 cut(s) 218, 302, 543
TscAI CASTG 1 cut(s) 43
TseFI GTSAC 1 cut(s) 318
TseI GCWGC 2 cut(s) 149, 499
Tsp45I GTSAC 1 cut(s) 318
TspDTI ATGAA 1 cut(s) 245
TspRI CASTG 1 cut(s) 43
XapI RAATTY 4 cut(s) 7, 140, 292, 485
XceI RCATGY 1 cut(s) 374
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 2 cut(s) 113, 495
ZraI GACGTC 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.