Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8325851.1

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 816

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8325851.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

atgagtgtcttcatcttcagttactctttcataatgctaactgttgcgaaacgggaaatgcatcgttatgccacactcatagaacaaagggagaaaactgagcaagctgagagaaagagcatgaggaaaagtgatgcatttgctaaagcaagccatgacattcgggctgcgctagctggaattattagttggatcaacttctgtaaagatgatattcatgatgcgcttgatctgcatgccacaaatgctggaactacccggcattctgaaatagagacaatcttaacaaaaatagattccaacttaaaaagactggatgttcatgcagaagatcttttaggtatattgaactctgttcttgacaaaagcaaaattgaagcaggtaagatggtacttgaaaatgaagaatttgatgtggctcagcttgttgaagaggtagtagatttgtttcttccaactgcatcaatgaagggattagatgtggtgttggatccttgtgatggatctgttataaagtttgcacgtgtgaaaggtgacaggggaaggcttaagcagatactaaacaacttactaagcaatgctgttaaatttacgtcagaagggcaaatcacaatccgcacctgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

208

Amino Acids

23.42

Weight (kDa)

6.09

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	512
Acc36I	ACCTGC	1 cut(s)	371
AciI	CCGC	1 cut(s)	616
AclWI	GGATC	4 cut(s)	200, 485, 498, 511
AcsI	RAATTY	2 cut(s)	407, 587
AcvI	CACGTG	1 cut(s)	524
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	1 cut(s)	500
AflII	CTTAAG	1 cut(s)	548
AflIII	ACRYGT	1 cut(s)	523
AgsI	TTSAA	4 cut(s)	349, 377, 398, 431
AjuI	GAANNNNNNNTTGG	2 cut(s)	172, 204
AluBI	AGCT	3 cut(s)	107, 176, 424
AluI	AGCT	3 cut(s)	107, 176, 424
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	4 cut(s)	200, 485, 498, 511
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	2 cut(s)	407, 587
AspLEI	GCGC	2 cut(s)	172, 226
AsuC2I	CCSGG	1 cut(s)	259
AsuHPI	GGTGA	1 cut(s)	545
AsuNHI	GCTAGC	1 cut(s)	172
BamHI	GGATCC	1 cut(s)	490
BbrPI	CACGTG	1 cut(s)	524
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	2 cut(s)	382, 494
BciT130I	CCWGG	1 cut(s)	622
BcnI	CCSGG	1 cut(s)	259
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	173
BfrI	CTTAAG	1 cut(s)	548
BfuAI	ACCTGC	1 cut(s)	371
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	1 cut(s)	168
BlpI	GCTNAGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	2 cut(s)	259, 622
BmiI	GGNNCC	1 cut(s)	492
BmrFI	CCNGG	2 cut(s)	259, 622
BmsI	GCATC	4 cut(s)	70, 124, 211, 470
BmtI	GCTAGC	1 cut(s)	176
Bpu1102I	GCTNAGC	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	259
BsaAI	YACGTR	1 cut(s)	524
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	583
BseBI	CCWGG	1 cut(s)	622
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMI	GCAATG	1 cut(s)	583
BseMII	CTCAG	3 cut(s)	90, 99, 434
BseNI	ACTGG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	262
Bsp143I	GATC	5 cut(s)	192, 229, 331, 490, 503
Bsp1720I	GCTNAGC	1 cut(s)	420
BspACI	CCGC	1 cut(s)	616
BspCNI	CTCAG	3 cut(s)	91, 100, 433
BspHI	TCATGA	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	492
BspMI	ACCTGC	1 cut(s)	371
BspOI	GCTAGC	1 cut(s)	176
BspPI	GGATC	4 cut(s)	200, 485, 498, 511
BspTI	CTTAAG	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	583
BsrI	ACTGG	1 cut(s)	318
BssMI	GATC	5 cut(s)	192, 229, 331, 490, 503
Bst2UI	CCWGG	1 cut(s)	622
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	1 cut(s)	426
BstAFI	CTTAAG	1 cut(s)	548
BstBAI	YACGTR	1 cut(s)	524
BstC8I	GCNNGC	4 cut(s)	105, 151, 174, 237
BstDEI	CTNAG	4 cut(s)	99, 108, 420, 572
BstF5I	GGATG	1 cut(s)	322
BstHHI	GCGC	2 cut(s)	172, 226
BstKTI	GATC	5 cut(s)	195, 232, 334, 493, 506
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	5 cut(s)	192, 229, 331, 490, 503
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 232, 245
BstNI	CCWGG	1 cut(s)	622
BstNSI	RCATGY	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	154
BstX2I	RGATCY	3 cut(s)	331, 490, 503
BstYI	RGATCY	3 cut(s)	331, 490, 503
BtsCI	GGATG	1 cut(s)	322
BveI	ACCTGC	1 cut(s)	371
Cac8I	GCNNGC	4 cut(s)	105, 151, 174, 237
CciI	TCATGA	1 cut(s)	217
CfoI	GCGC	2 cut(s)	172, 226
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	5 cut(s)	121, 155, 218, 236, 323
CviJI	RGCY	7 cut(s)	107, 153, 167, 176, 419, 424, 547
CviKI_1	RGCY	7 cut(s)	107, 153, 167, 176, 419, 424, 547
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	4 cut(s)	99, 108, 420, 572
DpnI	GATC	5 cut(s)	194, 231, 333, 492, 505
DpnII	GATC	5 cut(s)	192, 229, 331, 490, 503
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco72I	CACGTG	1 cut(s)	524
EcoT22I	ATGCAT	2 cut(s)	63, 139
FaeI	CATG	5 cut(s)	124, 158, 221, 239, 326
FatI	CATG	5 cut(s)	120, 154, 217, 235, 322
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	173
GlaI	GCGC	2 cut(s)	171, 225
GluI	GCNGC	1 cut(s)	168
HapII	CCGG	1 cut(s)	259
HhaI	GCGC	2 cut(s)	172, 226
Hin1II	CATG	5 cut(s)	124, 158, 221, 239, 326
Hin6I	GCGC	2 cut(s)	170, 224
HinP1I	GCGC	2 cut(s)	170, 224
HinfI	GANTC	1 cut(s)	296
HpaII	CCGG	1 cut(s)	259
HphI	GGTGA	1 cut(s)	545
Hpy188I	TCNGA	2 cut(s)	268, 598
Hpy188III	TCNNGA	2 cut(s)	218, 359
HpyAV	CCTTC	3 cut(s)	463, 537, 593
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	2 cut(s)	523, 593
HpyCH4V	TGCA	6 cut(s)	61, 137, 235, 326, 461, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 232, 245
HpyF3I	CTNAG	4 cut(s)	99, 108, 420, 572
HpySE526I	ACGT	2 cut(s)	523, 593
Hsp92II	CATG	5 cut(s)	124, 158, 221, 239, 326
HspAI	GCGC	2 cut(s)	170, 224
Kzo9I	GATC	5 cut(s)	192, 229, 331, 490, 503
LpnPI	CCDG	7 cut(s)	162, 234, 272, 299, 366, 523, 607
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	4 cut(s)	70, 124, 211, 470
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	2 cut(s)	523, 593
MaeIII	GTNAC	2 cut(s)	20, 533
MalI	GATC	5 cut(s)	194, 231, 333, 492, 505
MboI	GATC	5 cut(s)	192, 229, 331, 490, 503
MboII	GAAGA	5 cut(s)	7, 341, 416, 443, 443
MflI	RGATCY	3 cut(s)	331, 490, 503
MluCI	AATT	4 cut(s)	180, 372, 407, 587
MmeI	TCCRAC	4 cut(s)	170, 324, 468, 479
MnlI	CCTC	2 cut(s)	117, 427
Mph1103I	ATGCAT	2 cut(s)	63, 139
MseI	TTAA	4 cut(s)	284, 305, 549, 585
MslI	CAYNNNNRTG	1 cut(s)	66
MspCI	CTTAAG	1 cut(s)	548
MspI	CCGG	1 cut(s)	259
MspR9I	CCNGG	2 cut(s)	259, 622
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	622
MwoI	GCNNNNNNNGC	3 cut(s)	173, 232, 245
NciI	CCSGG	1 cut(s)	259
NdeII	GATC	5 cut(s)	192, 229, 331, 490, 503
NheI	GCTAGC	1 cut(s)	172
NlaIII	CATG	5 cut(s)	124, 158, 221, 239, 326
NlaIV	GGNNCC	1 cut(s)	492
NmuCI	GTSAC	1 cut(s)	533
NsiI	ATGCAT	2 cut(s)	63, 139
NspI	RCATGY	1 cut(s)	239
PaeI	GCATGC	1 cut(s)	239
PagI	TCATGA	1 cut(s)	217
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	296
PkrI	GCNGC	1 cut(s)	169
PmaCI	CACGTG	1 cut(s)	524
PmlI	CACGTG	1 cut(s)	524
Ppu21I	YACGTR	1 cut(s)	524
PsiI	TTATAA	1 cut(s)	512
PspCI	CACGTG	1 cut(s)	524
PspN4I	GGNNCC	1 cut(s)	492
PsuI	RGATCY	3 cut(s)	331, 490, 503
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
RseI	CAYNNNNRTG	1 cut(s)	66
SaqAI	TTAA	4 cut(s)	284, 305, 549, 585
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	5 cut(s)	192, 229, 331, 490, 503
ScrFI	CCNGG	2 cut(s)	259, 622
SfaNI	GCATC	4 cut(s)	70, 124, 211, 470
SmiMI	CAYNNNNRTG	1 cut(s)	66
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
SphI	GCATGC	1 cut(s)	239
Sse9I	AATT	4 cut(s)	180, 372, 407, 587
SsiI	CCGC	1 cut(s)	616
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	2 cut(s)	526, 596
TasI	AATT	4 cut(s)	180, 372, 407, 587
TfiI	GAWTC	1 cut(s)	296
Tru1I	TTAA	4 cut(s)	284, 305, 549, 585
Tru9I	TTAA	4 cut(s)	284, 305, 549, 585
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	5 cut(s)	19, 206, 311, 417, 482
Vha464I	CTTAAG	1 cut(s)	548
XapI	RAATTY	2 cut(s)	407, 587
XceI	RCATGY	1 cut(s)	239
XspI	CTAG	1 cut(s)	173
Zsp2I	ATGCAT	2 cut(s)	63, 139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.