Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Forward (+)

947342 .. 947902

Gene Structure 561 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG007300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTACTTGAAGACGAAGAGTTTGACATATCGCGACTTGTTAAGGAGGTAGTTGATTTCCTTCTTCCATCGGGTTTAAAGAAGGGGATAGATGTGGTGTTGGATCCTCATGATTGCTCTCTTCTAAAGTTTGCACATGTGAAAGGTGACAAGGGAAGGCTTAAACAGATATTATGCAACTTATTAGGGAATGCTGTCAAATTTACTTCAGAGGGACATGTAACAGTCCATGCTTGGGTTCAGAAACCTAGTTTCATGAATTCAATCACTGCTGCTAATTCTGATTTGAATTATAGTTTCTTGAAGCATTTGTTTTGTTTTTTGAACTACAAGAACATGACCAAAGAACAATTAGATGGCATCGAAGCAGTGAAGGGGGTTCAAAATGATCCAAATTTTTTGGAATTTGTTTTTGAGGTGGATGGTACAGGGAGGGGAATTCCCAAGAAGAAGCAAAAAGAAGTGTTTGAAAACTATGTTCAAGTCAAAGAAAAAGCTCATGGAGAAGGAGGTACTGGCTTAGGACCTGGTATTGTTCAGTCTCTAGCAAGTAATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

186

Amino Acids

20.59

Weight (kDa)

6.3

Isoelectric Point (pI)

11.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	34
AclWI	GGATC	3 cut(s)	98, 111, 383
AcsI	RAATTY	5 cut(s)	200, 259, 394, 404, 438
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	3 cut(s)	6, 427, 514
AfiI	CCNNNNNNNGG	1 cut(s)	235
AflIII	ACRYGT	2 cut(s)	136, 217
AgsI	TTSAA	8 cut(s)	11, 264, 289, 304, 325, 383, 470, 482
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	1 cut(s)	497
AluI	AGCT	1 cut(s)	497
Alw26I	GTCTC	1 cut(s)	546
AlwI	GGATC	3 cut(s)	98, 111, 383
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	5 cut(s)	200, 259, 394, 404, 438
ArsI	GACNNNNNNTTYG	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	524
AsuHPI	GGTGA	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	524
BamHI	GGATCC	1 cut(s)	103
BbsI	GAAGAC	1 cut(s)	18
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	3 cut(s)	76, 350, 416
BciT130I	CCWGG	1 cut(s)	528
BcoDI	GTCTC	1 cut(s)	546
BfaI	CTAG	2 cut(s)	249, 545
BisI	GCNGC	1 cut(s)	273
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	524
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	18
Bpu10I	CCTNAGC	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	520
BseBI	CCWGG	1 cut(s)	528
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	520
BseXI	GCAGC	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	34
BslFI	GGGAC	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	546
BsmFI	GGGAC	1 cut(s)	228
BsmI	GAATGC	1 cut(s)	196
Bsp143I	GATC	2 cut(s)	103, 388
Bsp68I	TCGCGA	1 cut(s)	34
BspFNI	CGCG	1 cut(s)	34
BspHI	TCATGA	2 cut(s)	109, 255
BspLI	GGNNCC	1 cut(s)	105
BspPI	GGATC	3 cut(s)	98, 111, 383
BsrI	ACTGG	1 cut(s)	520
BssMI	GATC	2 cut(s)	103, 388
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	226
Bst6I	CTCTTC	2 cut(s)	12, 126
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstDEI	CTNAG	1 cut(s)	520
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	1 cut(s)	34
BstKTI	GATC	2 cut(s)	106, 391
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	2 cut(s)	103, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	2 cut(s)	140, 221
BstSCI	CCNGG	1 cut(s)	526
BstUI	CGCG	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	427
BtsI	GCAGTG	2 cut(s)	267, 375
BtsIMutI	CAGTG	2 cut(s)	267, 375
BtuMI	TCGCGA	1 cut(s)	34
CciI	TCATGA	2 cut(s)	109, 255
Cfr13I	GGNCC	1 cut(s)	524
CsiI	ACCWGGT	1 cut(s)	526
Csp6I	GTAC	3 cut(s)	5, 426, 513
CviAII	CATG	7 cut(s)	110, 137, 218, 230, 256, 337, 500
CviJI	RGCY	3 cut(s)	160, 497, 519
CviKI_1	RGCY	3 cut(s)	160, 497, 519
CviQI	GTAC	3 cut(s)	5, 426, 513
DdeI	CTNAG	1 cut(s)	520
DpnI	GATC	2 cut(s)	105, 390
DpnII	GATC	2 cut(s)	103, 388
DraI	TTTAAA	1 cut(s)	78
Eam1104I	CTCTTC	2 cut(s)	12, 126
EarI	CTCTTC	2 cut(s)	12, 126
Eco47I	GGWCC	1 cut(s)	524
Eco57I	CTGAAG	1 cut(s)	192
EcoO109I	RGGNCCY	1 cut(s)	524
EcoRI	GAATTC	2 cut(s)	259, 438
EcoRII	CCWGG	1 cut(s)	526
EcoT22I	ATGCAT	1 cut(s)	559
FaeI	CATG	7 cut(s)	113, 140, 221, 233, 259, 340, 503
FaqI	GGGAC	1 cut(s)	228
FatI	CATG	7 cut(s)	109, 136, 217, 229, 255, 336, 499
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	1 cut(s)	434
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	2 cut(s)	249, 545
GluI	GCNGC	1 cut(s)	273
Hin1II	CATG	7 cut(s)	113, 140, 221, 233, 259, 340, 503
HphI	GGTGA	1 cut(s)	158
Hpy188I	TCNGA	3 cut(s)	211, 243, 283
Hpy188III	TCNNGA	4 cut(s)	33, 110, 256, 301
HpyAV	CCTTC	5 cut(s)	71, 76, 150, 367, 500
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	3 cut(s)	134, 177, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpyF3I	CTNAG	1 cut(s)	520
Hsp92II	CATG	7 cut(s)	113, 140, 221, 233, 259, 340, 503
Kzo9I	GATC	2 cut(s)	103, 388
LpnPI	CCDG	4 cut(s)	414, 501, 513, 540
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	1 cut(s)	369
MabI	ACCWGGT	1 cut(s)	526
MaeI	CTAG	2 cut(s)	249, 545
MaeIII	GTNAC	2 cut(s)	146, 220
MalI	GATC	2 cut(s)	105, 390
MboI	GATC	2 cut(s)	103, 388
MboII	GAAGA	5 cut(s)	23, 29, 56, 113, 460
MflI	RGATCY	1 cut(s)	103
MluCI	AATT	8 cut(s)	200, 259, 277, 289, 350, 394, 404, 438
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	6 cut(s)	40, 117, 205, 409, 426, 503
Mph1103I	ATGCAT	1 cut(s)	559
MseI	TTAA	3 cut(s)	42, 77, 162
MspR9I	CCNGG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	528
MvnI	CGCG	1 cut(s)	34
MwoI	GCNNNNNNNGC	1 cut(s)	554
NdeII	GATC	2 cut(s)	103, 388
NlaIII	CATG	7 cut(s)	113, 140, 221, 233, 259, 340, 503
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	146
NruI	TCGCGA	1 cut(s)	34
NsiI	ATGCAT	1 cut(s)	559
NspI	RCATGY	2 cut(s)	140, 221
PagI	TCATGA	2 cut(s)	109, 255
PciI	ACATGT	2 cut(s)	136, 217
PctI	GAATGC	1 cut(s)	196
PkrI	GCNGC	1 cut(s)	274
PpuMI	RGGWCCY	1 cut(s)	524
PscI	ACATGT	2 cut(s)	136, 217
Psp5II	RGGWCCY	1 cut(s)	524
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	524
PspPPI	RGGWCCY	1 cut(s)	524
PsuI	RGATCY	1 cut(s)	103
RruI	TCGCGA	1 cut(s)	34
RsaI	GTAC	3 cut(s)	6, 427, 514
RsaNI	GTAC	3 cut(s)	5, 426, 513
SaqAI	TTAA	3 cut(s)	42, 77, 162
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	2 cut(s)	103, 388
Sau96I	GGNCC	1 cut(s)	524
ScrFI	CCNGG	1 cut(s)	528
SetI	ASST	7 cut(s)	51, 148, 250, 420, 499, 514, 529
SexAI	ACCWGGT	1 cut(s)	526
SfaNI	GCATC	1 cut(s)	369
SinI	GGWCC	1 cut(s)	524
Sse9I	AATT	8 cut(s)	200, 259, 277, 289, 350, 394, 404, 438
SspMI	CTAG	2 cut(s)	249, 545
StyD4I	CCNGG	1 cut(s)	526
TaaI	ACNGT	1 cut(s)	226
TaqI	TCGA	1 cut(s)	363
TasI	AATT	8 cut(s)	200, 259, 277, 289, 350, 394, 404, 438
Tru1I	TTAA	3 cut(s)	42, 77, 162
Tru9I	TTAA	3 cut(s)	42, 77, 162
TscAI	CASTG	2 cut(s)	274, 375
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	1 cut(s)	146
TspDTI	ATGAA	2 cut(s)	244, 272
TspRI	CASTG	2 cut(s)	274, 375
VpaK11BI	GGWCC	1 cut(s)	524
XapI	RAATTY	5 cut(s)	200, 259, 394, 404, 438
XceI	RCATGY	2 cut(s)	140, 221
XspI	CTAG	2 cut(s)	249, 545
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.