Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Forward (+)

6035314 .. 6036683

Gene Structure 1370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22463

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGATTCATCTTCTTAATAAACTAAATTTTCAGTTGTTGAGGTGGTACTTGAAGACGAAGAGTTTTGACATATCGCAACTTGTTGAAGAGGTAGTCGATTTCTTTCTTCCATCTGGTTTACAGAAGGGCATAGATGTGGTGTTGGATTCTTATGATTGCTTTCTTCTAAAGTTTGCACATGTGAAAGGTGACAAGGGAAGGCTTAAGCAGATATTGTGCAACTTATTAGGGAATGCTGTCAAATTTACTTCAGAGAGACATGTAACAGTTCGTGCTTGGGTTCAGAAACCTAATTTCATGAATTCAATCACTGCTGCTAATCCTGATTTGAATTATGGTTTCTTGAAGCATTTGTTTTGTTTTTTGAACTTCAAGAACATGAGCAAAGAACAATTAGATGGCATCAAAGCAGTGAAGGGGGTTCAAAATGATCCAAATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

147

Amino Acids

16.94

Weight (kDa)

9.3

Isoelectric Point (pI)

20.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	425
AcsI	RAATTY	4 cut(s)	25, 242, 301, 436
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	47
AflII	CTTAAG	1 cut(s)	203
AflIII	ACRYGT	2 cut(s)	178, 259
AgsI	TTSAA	8 cut(s)	52, 86, 306, 331, 346, 367, 373, 425
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	1 cut(s)	425
ApeKI	GCWGC	1 cut(s)	314
ApoI	RAATTY	4 cut(s)	25, 242, 301, 436
AsuHPI	GGTGA	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	2 cut(s)	118, 392
BcoDI	GTCTC	1 cut(s)	250
BfrI	CTTAAG	1 cut(s)	203
BisI	GCNGC	1 cut(s)	315
BlsI	GCNGC	1 cut(s)	316
BmsI	GCATC	1 cut(s)	411
BpiI	GAAGAC	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	250
BsmI	GAATGC	1 cut(s)	238
Bsp143I	GATC	1 cut(s)	430
BspHI	TCATGA	1 cut(s)	297
BspPI	GGATC	1 cut(s)	425
BspTI	CTTAAG	1 cut(s)	203
BssMI	GATC	1 cut(s)	430
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	2 cut(s)	53, 81
BstAFI	CTTAAG	1 cut(s)	203
BstKTI	GATC	1 cut(s)	433
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	430
BstNSI	RCATGY	2 cut(s)	182, 263
BstV1I	GCAGC	1 cut(s)	301
BstV2I	GAAGAC	1 cut(s)	59
BtsI	GCAGTG	2 cut(s)	309, 417
BtsIMutI	CAGTG	2 cut(s)	309, 417
CciI	TCATGA	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	46
CviAII	CATG	4 cut(s)	179, 260, 298, 379
CviJI	RGCY	1 cut(s)	202
CviKI_1	RGCY	1 cut(s)	202
CviQI	GTAC	1 cut(s)	46
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
Eam1104I	CTCTTC	2 cut(s)	53, 81
EarI	CTCTTC	2 cut(s)	53, 81
Eco57I	CTGAAG	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	301
FaeI	CATG	4 cut(s)	182, 263, 301, 382
FaiI	YATR	8 cut(s)	71, 131, 153, 180, 261, 299, 336, 380
FatI	CATG	4 cut(s)	178, 259, 297, 378
Fnu4HI	GCNGC	1 cut(s)	315
Fsp4HI	GCNGC	1 cut(s)	315
GluI	GCNGC	1 cut(s)	315
Hin1II	CATG	4 cut(s)	182, 263, 301, 382
HinfI	GANTC	2 cut(s)	4, 146
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	2 cut(s)	253, 285
Hpy188III	TCNNGA	4 cut(s)	298, 323, 343, 373
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	3 cut(s)	118, 192, 409
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	2 cut(s)	176, 219
Hsp92II	CATG	4 cut(s)	182, 263, 301, 382
Kzo9I	GATC	1 cut(s)	430
LpnPI	CCDG	2 cut(s)	99, 336
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	1 cut(s)	411
MaeIII	GTNAC	2 cut(s)	188, 262
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	5 cut(s)	64, 70, 98, 98, 155
MluCI	AATT	7 cut(s)	25, 242, 292, 301, 331, 392, 436
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	2 cut(s)	33, 82
MseI	TTAA	2 cut(s)	15, 204
MslI	CAYNNNNRTG	1 cut(s)	134
MspCI	CTTAAG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	238
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	4 cut(s)	182, 263, 301, 382
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	2 cut(s)	182, 263
PagI	TCATGA	1 cut(s)	297
PciI	ACATGT	2 cut(s)	178, 259
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	4, 146
PkrI	GCNGC	1 cut(s)	316
PscI	ACATGT	2 cut(s)	178, 259
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	134
SaqAI	TTAA	2 cut(s)	15, 204
SatI	GCNGC	1 cut(s)	315
Sau3AI	GATC	1 cut(s)	430
SetI	ASST	4 cut(s)	44, 93, 190, 292
SfaNI	GCATC	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	134
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	7 cut(s)	25, 242, 292, 301, 331, 392, 436
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	96
TasI	AATT	7 cut(s)	25, 242, 292, 301, 331, 392, 436
TfiI	GAWTC	2 cut(s)	4, 146
Tru1I	TTAA	2 cut(s)	15, 204
Tru9I	TTAA	2 cut(s)	15, 204
TscAI	CASTG	2 cut(s)	316, 417
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	1 cut(s)	314
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	2 cut(s)	286, 314
TspRI	CASTG	2 cut(s)	316, 417
Vha464I	CTTAAG	1 cut(s)	203
XapI	RAATTY	4 cut(s)	25, 242, 301, 436
XceI	RCATGY	2 cut(s)	182, 263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.