Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Forward (+)

1091791 .. 1099116

Gene Structure 7326 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00218870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2964 bp

ATGGGCAATTCCATGTCACACAAGCAAGTCCATGGCACTGGAAAAGTCATACTGTCGGATGGGTCGGTGCACGAGTTCAATAATCATGATCTAACAGTTGCTGAGCTGATGCTAGAGCACCCGCAACAAGTAGTGGTCGAATTCCGGGCAGCTGTCTCAGCAAAAAGACCAATCCCATTACCCGCAGATACAAAGCTGGACAAGAAAAAGGTTTACTTAATGCTTCCAATGAAGCGAGGGAAACCATTGTCAATGTCATCCGAAGATATTCGCGGTGTTCTTTCAAGTGCAAATTCACTTTTACGATCAAGATCATCATCACTGAAATTCTTGCCTCTGTTTGCAAGGATATGCCCTGCAGGAGATGCACATGCTTTTGTGTTGCCAAAGAAGGAATATAGCATGGAGAGGACGTCAGAATCGGAGGTGGTGAGGTCGTATCTGCCGGAGTTTGACATGGAGGAAAGTTTGGATGCGAGGCCAGAATTTTTGACGAGGCAGCTTTCCGGCAAGGCTGCTTGGAAGCCTAATTTGGATACCATTAAGGAGAAGAAGGTTGAGAAGAAGCTGTCTCATTGTTACTCTTTCATAATGCTAACTGTCGCGAAACGGGAAATGCATCGTTATGCCACACTCATAGAACAAAGGGAGAAAACTGAGCAAGCTGAGAGAAAGAGCATGAGGAAAAGTGATGCATTTGCTAAAGCAAGCCATGACATTCGTGCCGCGCTTGCTGGAATTATTAGTTGGATCAACTTCTGTAAAGATGATATTCATGATGCGCTTGATATTCATGCCACAAGTGCTGGAACTACCCGGCATTCTGAAATAGAGACAATCTTAACAAAAATAGATTCCAACTTAAAAAGACTGGATGTTCATGCAGAAGATCTTTTAGGTATATTGAACTCTGTCCTTGATAAAAGCAAAATTGAAGCAGGTAAGATGGTACTTGAAAATGAAGAATTTGATGTGGCTCAGCTTGTTGAAGAGGTAGTGGATTTGTTTCTTCCAACAGCATCAATGAAGGGATTAGATGTGGTGTTGGATCCTTGCGATGGATCTGTTATAAAGTTTGCACGTGTGAGAGGTGACAGGGGAAGGCTTAAGCAGATACTAAACAACTTGCTAAGCAATGCTGTTAAATTTACGTCAGAAGGGCAAATCACAATCCGCACCTGGGTCCGAAAACCAAGTTTTAAGAAGTCAATAACTGCTTCTCGTGAGCGGACTAATGGTTTCTTGAAACAGTTCTTGTGCTTCTTTAATTACAAGAGCATGAACAATGATGACAAGGAAGTAGTGGATGGTTCTCAACGTGATCCAAATGCTTTGGAATTTGTTTTTGAGGTGGATGATACTGGTAGGGGAATTCTCAAGGAGAGGCAAAAATCGGTGTTCGAGGACTATGTCCAAGTCAAAGAAAAAGCACTTGGAGAAGGTGGTACCGGCTTAGGACTGGGAATTGTTCAATCTCTGGTGCGTTTGATGCATGGAGAAATAGGAATTGTGGACAAGGAGATTGGGGAAAGAGGGACATGCTTCAGGTTCAATGTACTGCTAAGTACTATTAATGCCTGTGAGGATAGCATAAAAGTAGAACCAGACATTGAAATGGGAATTAGTGACTTAAACCCTAGTCCCGGGCCGACTGTTAATCAAACACCAATTGCAAGCCCCAGGTTGAACATTCGCAGTACCACCGCGAGTCCTAAGGTCGAGGGATCCTATGTTGTAATGCTGATTAAAAATGCAGAGCGCAGGAGAGTTATACAGAAGTTTATGGAGAGACTTGGGATAAAAGTATCAGTAGCAGAACGATGGGAACAACTTGCTCGTACTCTCCAGAACATAAAAAACAAGAAGATTTACCATTCTCAACATAATTCCATATCAGGAATACCCGATTTGGGTCTGCAGGATTGCTTGATCAAATCCGCCTCATGCAACTCCAACTTCAGCTTTAATAGAGCAAAGGAAGCGTCTTTGATGAGTTCCATGGATGGATCAACAGATAACAACATTCTTTCTCTCTTTCATAAGAAGAGTAGTAGTAGTAATCTTCGTGGAGCATATGATCGCTTCGTAATGCTACTTATTGATACTACAGGTGGACCACTCCCAGAACTATGCAAGATTGTGAATGATTTCAAAAGAGGCCTCCAAAATGGTTGGTACTGCAAGGTTGTTTGGTTATCAAGTCCATTTACTCATAGCGATCTAAGCTTCAACAGAGAAATGTTGGATGGCGATGATGTTATCAAACACAAGCCTCTACATGGTACTTGTCTATATGAAGTTGTAAGACTTCTTCCAGAGTGCGGGGCCGCATTACCAAAAAGATCATCAGGTCAGGTTGCATCAAAACTAGTTTCCACAGCTCTTGGTTCATCAAGAAATCAGTACATTCATACCGATGATGACAACTCCTCTGACCAAATAGTACAAGAGAGTAATACACCGACTCTTCAACATCATCAACCTCCGAACAATATTGGCTCCAAAGCAGCAAGTCAATCAGCCCCAGCAGACCATGGCAACAAACCCTTGACTGGGAAGAAAATCTTGGTTGCAGAGGACACAGCATCGTTACGCATGGTGGCTATGCAGGCTTTGTCACGATTGGGTGCAACTGTGAAGCTTTGTGAAAATGGAAGAGAAGCTTTGGATCTAATTCGCAATGATCTACTCAATCAAAGGAAACATGTCTATGACTATATACTGATGGATTGCCAGATGCCAGAAATGGATGGGTTCGAAGCGACCAGGGAAATCAGGAAAGAGGAGAAATCTTACAATGTTCGCATTCCGATCATCGCATTAACAGCTCATGCAAAAGGAGGCGAGGAAACAAGAAGGATGATGGAGGCTGGTATGGACGAACATTTAGAGAAAACCTCCATAGTGACTAGTCTAGGGGAAACACTAGCAAAGATTGATCATAGTACGAAAGCAACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

987

Amino Acids

110.1

Weight (kDa)

8.39

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PADRE	PF14009	1 - 183	4.1e-22	PADRE domain
HATPase_c	PF02518	446 - 519	4.2e-12	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Response_reg	PF00072	855 - 967	3.2e-19	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1070
AatII	GACGTC	1 cut(s)	416
Acc36I	ACCTGC	1 cut(s)	929
Acc65I	GGTACC	1 cut(s)	1445
AccB1I	GGYRCC	1 cut(s)	1445
AccBSI	CCGCTC	1 cut(s)	1228
AccII	CGCG	4 cut(s)	273, 605, 728, 1706
AclWI	GGATC	9 cut(s)	758, 1043, 1056, 1069, 1316, 1719, 1732, 2014, 2676
AcsI	RAATTY	8 cut(s)	140, 292, 326, 485, 965, 1145, 1337, 1371
AcuI	CTGAAG	2 cut(s)	1528, 1942
AcvI	CACGTG	1 cut(s)	1082
AcyI	GRCGYC	1 cut(s)	413
AfiI	CCNNNNNNNGG	8 cut(s)	1058, 1180, 1643, 1910, 2279, 2321, 2552, 2553
AflII	CTTAAG	1 cut(s)	1106
AflIII	ACRYGT	2 cut(s)	1081, 2704
AhlI	ACTAGT	2 cut(s)	2368, 2909
AjnI	CCWGG	3 cut(s)	1178, 1679, 2765
AjuI	GAANNNNNNNTTGG	8 cut(s)	515, 547, 730, 762, 1416, 1448, 2549, 2581
Alw21I	GWGCWC	2 cut(s)	72, 120
Alw26I	GTCTC	4 cut(s)	160, 576, 827, 1783
Alw44I	GTGCAC	1 cut(s)	68
AlwI	GGATC	9 cut(s)	758, 1043, 1056, 1069, 1316, 1719, 1732, 2014, 2676
AlwNI	CAGNNNCTG	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	1643
AoxI	GGCC	4 cut(s)	479, 1646, 2158, 2325
ApaLI	GTGCAC	1 cut(s)	68
ApeKI	GCWGC	4 cut(s)	149, 499, 515, 2507
ApoI	RAATTY	8 cut(s)	140, 292, 326, 485, 965, 1145, 1337, 1371
ArsI	GACNNNNNNTTYG	2 cut(s)	1967, 1999
AseI	ATTAAT	1 cut(s)	1572
Asp700I	GAANNNNTTC	3 cut(s)	267, 1250, 2147
Asp718I	GGTACC	1 cut(s)	1445
AspLEI	GCGC	3 cut(s)	730, 784, 1761
AspS9I	GGNCC	4 cut(s)	1183, 1646, 2114, 2325
AsuC2I	CCSGG	4 cut(s)	146, 817, 1644, 1645
AsuHPI	GGTGA	2 cut(s)	442, 1103
AsuII	TTCGAA	1 cut(s)	2757
AvaI	CYCGRG	1 cut(s)	1643
AvaII	GGWCC	2 cut(s)	1183, 2114
AxyI	CCTNAGG	1 cut(s)	1713
BaeGI	GKGCMC	1 cut(s)	72
BamHI	GGATCC	2 cut(s)	1048, 1724
BanI	GGYRCC	1 cut(s)	1445
BarI	GAAGNNNNNNTAC	2 cut(s)	2295, 2327
BauI	CACGAG	2 cut(s)	71, 1221
BbrPI	CACGTG	1 cut(s)	1082
Bbv12I	GWGCWC	2 cut(s)	72, 120
BbvI	GCAGC	4 cut(s)	161, 502, 511, 2519
BciT130I	CCWGG	3 cut(s)	1180, 1681, 2767
BciVI	GTATCC	1 cut(s)	529
BclI	TGATCA	2 cut(s)	1929, 2938
BcnI	CCSGG	4 cut(s)	146, 817, 1644, 1645
BcoDI	GTCTC	4 cut(s)	160, 576, 827, 1783
BcuI	ACTAGT	2 cut(s)	2368, 2909
BfaI	CTAG	8 cut(s)	113, 1638, 2369, 2910, 2915, 2927, 2958, 2962
BfmI	CTRYAG	3 cut(s)	357, 1916, 2106
BfrI	CTTAAG	1 cut(s)	1106
BfuAI	ACCTGC	1 cut(s)	929
BfuI	GTATCC	1 cut(s)	529
BglII	AGATCT	1 cut(s)	889
BisI	GCNGC	6 cut(s)	150, 500, 516, 726, 2328, 2508
BlpI	GCTNAGC	3 cut(s)	102, 978, 1130
BlsI	GCNGC	6 cut(s)	151, 501, 517, 727, 2329, 2509
BmcAI	AGTACT	1 cut(s)	1567
Bme1390I	CCNGG	7 cut(s)	146, 817, 1180, 1644, 1645, 1681, 2767
Bme18I	GGWCC	2 cut(s)	1183, 2114
BmeT110I	CYCGRG	1 cut(s)	1643
BmgT120I	GGNCC	4 cut(s)	1183, 1646, 2114, 2325
BmiI	GGNNCC	6 cut(s)	1050, 1184, 1447, 1726, 2326, 2500
BmrFI	CCNGG	7 cut(s)	146, 817, 1180, 1644, 1645, 1681, 2767
BmrI	ACTGGG	2 cut(s)	1469, 2562
BmuI	ACTGGG	2 cut(s)	1469, 2562
BplI	GAGNNNNNCTC	2 cut(s)	2882, 2914
BpmI	CTGGAG	1 cut(s)	1829
Bpu10I	CCTNAGC	1 cut(s)	1453
Bpu1102I	GCTNAGC	3 cut(s)	102, 978, 1130
Bpu14I	TTCGAA	1 cut(s)	2757
BpuEI	CTTGAG	1 cut(s)	1361
BpuMI	CCSGG	4 cut(s)	146, 817, 1644, 1645
BsaAI	YACGTR	1 cut(s)	1082
BsaBI	GATNNNNATC	2 cut(s)	310, 316
BsaHI	GRCGYC	1 cut(s)	413
BsaJI	CCNNGG	7 cut(s)	31, 1179, 1643, 1679, 1998, 2533, 2766
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	8 cut(s)	1058, 1180, 1643, 1910, 2279, 2321, 2552, 2553
Bse118I	RCCGGY	1 cut(s)	1448
Bse1I	ACTGG	5 cut(s)	43, 876, 1366, 1464, 2557
Bse21I	CCTNAGG	1 cut(s)	1713
Bse3DI	GCAATG	2 cut(s)	1141, 2686
Bse8I	GATNNNNATC	2 cut(s)	310, 316
BseBI	CCWGG	3 cut(s)	1180, 1681, 2767
BseDI	CCNNGG	7 cut(s)	31, 1179, 1643, 1679, 1998, 2533, 2766
BseJI	GATNNNNATC	2 cut(s)	310, 316
BseLI	CCNNNNNNNGG	8 cut(s)	1058, 1180, 1643, 1910, 2279, 2321, 2552, 2553
BseMI	GCAATG	2 cut(s)	1141, 2686
BseMII	CTCAG	5 cut(s)	93, 171, 648, 657, 992
BseNI	ACTGG	5 cut(s)	43, 876, 1366, 1464, 2557
BseRI	GAGGAG	2 cut(s)	2419, 2798
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	4 cut(s)	161, 502, 511, 2519
BseYI	CCCAGC	1 cut(s)	2524
Bsh1236I	CGCG	4 cut(s)	273, 605, 728, 1706
BshFI	GGCC	4 cut(s)	481, 1648, 2160, 2327
BshNI	GGYRCC	1 cut(s)	1445
BsiHKAI	GWGCWC	2 cut(s)	72, 120
BsiHKCI	CYCGRG	1 cut(s)	1643
BsiSI	CCGG	6 cut(s)	145, 446, 507, 817, 1449, 1644
BslFI	GGGAC	2 cut(s)	1549, 1626
BslI	CCNNNNNNNGG	8 cut(s)	1058, 1180, 1643, 1910, 2279, 2321, 2552, 2553
BsmAI	GTCTC	4 cut(s)	160, 576, 827, 1783
BsmFI	GGGAC	2 cut(s)	1549, 1626
BsmI	GAATGC	2 cut(s)	820, 2805
BsnI	GGCC	4 cut(s)	481, 1648, 2160, 2327
BsoBI	CYCGRG	1 cut(s)	1643
Bsp119I	TTCGAA	1 cut(s)	2757
Bsp1286I	GDGCHC	2 cut(s)	72, 120
Bsp1720I	GCTNAGC	3 cut(s)	102, 978, 1130
Bsp19I	CCATGG	3 cut(s)	31, 1998, 2533
Bsp68I	TCGCGA	1 cut(s)	605
BspANI	GGCC	4 cut(s)	481, 1648, 2160, 2327
BspCNI	CTCAG	5 cut(s)	94, 170, 649, 658, 991
BspFNI	CGCG	4 cut(s)	273, 605, 728, 1706
BspHI	TCATGA	2 cut(s)	85, 775
BspLI	GGNNCC	6 cut(s)	1050, 1184, 1447, 1726, 2326, 2500
BspMAI	CTGCAG	2 cut(s)	361, 1920
BspMI	ACCTGC	1 cut(s)	929
BspPI	GGATC	9 cut(s)	758, 1043, 1056, 1069, 1316, 1719, 1732, 2014, 2676
BspT104I	TTCGAA	1 cut(s)	2757
BspT107I	GGYRCC	1 cut(s)	1445
BspTI	CTTAAG	1 cut(s)	1106
BsrBI	CCGCTC	1 cut(s)	1228
BsrDI	GCAATG	2 cut(s)	1141, 2686
BsrFI	RCCGGY	1 cut(s)	1448
BsrI	ACTGG	5 cut(s)	43, 876, 1366, 1464, 2557
BssAI	RCCGGY	1 cut(s)	1448
BssECI	CCNNGG	7 cut(s)	31, 1179, 1643, 1679, 1998, 2533, 2766
BssNI	GRCGYC	1 cut(s)	413
BssSI	CACGAG	2 cut(s)	71, 1221
BssT1I	CCWWGG	3 cut(s)	31, 1998, 2533
Bst2BI	CACGAG	2 cut(s)	71, 1221
Bst2UI	CCWGG	3 cut(s)	1180, 1681, 2767
Bst4CI	ACNGT	6 cut(s)	54, 97, 601, 1251, 1654, 2635
Bst6I	CTCTTC	4 cut(s)	984, 2039, 2472, 2650
BstACI	GRCGYC	1 cut(s)	413
BstAFI	CTTAAG	1 cut(s)	1106
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstBAI	YACGTR	1 cut(s)	1082
BstBI	TTCGAA	1 cut(s)	2757
BstC8I	GCNNGC	5 cut(s)	663, 709, 732, 1675, 2610
BstDSI	CCRYGG	3 cut(s)	31, 1998, 2533
BstFNI	CGCG	4 cut(s)	273, 605, 728, 1706
BstHHI	GCGC	3 cut(s)	730, 784, 1761
BstMAI	GTCTC	4 cut(s)	160, 576, 827, 1783
BstMWI	GCNNNNNNNGC	9 cut(s)	158, 365, 731, 803, 1489, 1979, 2223, 2609, 2825
BstNI	CCWGG	3 cut(s)	1180, 1681, 2767
BstNSI	RCATGY	3 cut(s)	374, 1542, 2708
BstSCI	CCNGG	7 cut(s)	144, 815, 1178, 1642, 1643, 1679, 2765
BstSFI	CTRYAG	3 cut(s)	357, 1916, 2106
BstSLI	GKGCMC	1 cut(s)	72
BstUI	CGCG	4 cut(s)	273, 605, 728, 1706
BstV1I	GCAGC	4 cut(s)	161, 502, 511, 2519
BstX2I	RGATCY	5 cut(s)	889, 1048, 1061, 1724, 2668
BstXI	CCANNNNNNTGG	1 cut(s)	38
BstYI	RGATCY	5 cut(s)	889, 1048, 1061, 1724, 2668
Bsu36I	CCTNAGG	1 cut(s)	1713
BsuI	GTATCC	1 cut(s)	529
BsuRI	GGCC	4 cut(s)	481, 1648, 2160, 2327
BtgI	CCRYGG	3 cut(s)	31, 1998, 2533
BtgZI	GCGATG	3 cut(s)	1071, 2265, 2800
BtsIMutI	CAGTG	2 cut(s)	36, 320
BtuMI	TCGCGA	1 cut(s)	605
BveI	ACCTGC	1 cut(s)	929
Cac8I	GCNNGC	5 cut(s)	663, 709, 732, 1675, 2610
CaiI	CAGNNNCTG	1 cut(s)	101
CciI	TCATGA	2 cut(s)	85, 775
CfoI	GCGC	3 cut(s)	730, 784, 1761
Cfr10I	RCCGGY	1 cut(s)	1448
Cfr13I	GGNCC	4 cut(s)	1183, 1646, 2114, 2325
Cfr9I	CCCGGG	1 cut(s)	1643
CseI	GACGC	1 cut(s)	1971
CspCI	CAANNNNNGTGG	2 cut(s)	2365, 2400
Eam1104I	CTCTTC	4 cut(s)	984, 2039, 2472, 2650
EarI	CTCTTC	4 cut(s)	984, 2039, 2472, 2650
EciI	GGCGGA	1 cut(s)	1927
Eco130I	CCWWGG	3 cut(s)	31, 1998, 2533
Eco147I	AGGCCT	1 cut(s)	2160
Eco47I	GGWCC	2 cut(s)	1183, 2114
Eco57I	CTGAAG	2 cut(s)	1528, 1942
Eco72I	CACGTG	1 cut(s)	1082
Eco81I	CCTNAGG	1 cut(s)	1713
Eco88I	CYCGRG	1 cut(s)	1643
EcoRI	GAATTC	2 cut(s)	140, 1371
EcoRII	CCWGG	3 cut(s)	1178, 1679, 2765
EcoT14I	CCWWGG	3 cut(s)	31, 1998, 2533
EcoT22I	ATGCAT	3 cut(s)	621, 697, 1494
ErhI	CCWWGG	3 cut(s)	31, 1998, 2533
FalI	AAGNNNNNCTT	6 cut(s)	200, 232, 2549, 2581, 2647, 2679
FaqI	GGGAC	2 cut(s)	1549, 1626
FauI	CCCGC	3 cut(s)	129, 190, 2315
FauNDI	CATATG	1 cut(s)	2074
FbaI	TGATCA	2 cut(s)	1929, 2938
Fnu4HI	GCNGC	6 cut(s)	150, 500, 516, 726, 2328, 2508
Fsp4HI	GCNGC	6 cut(s)	150, 500, 516, 726, 2328, 2508
FspBI	CTAG	8 cut(s)	113, 1638, 2369, 2910, 2915, 2927, 2958, 2962
GlaI	GCGC	3 cut(s)	729, 783, 1760
GluI	GCNGC	6 cut(s)	150, 500, 516, 726, 2328, 2508
GsaI	CCCAGC	1 cut(s)	2528
GsuI	CTGGAG	1 cut(s)	1829
HaeIII	GGCC	4 cut(s)	481, 1648, 2160, 2327
HapII	CCGG	6 cut(s)	145, 446, 507, 817, 1449, 1644
HgaI	GACGC	1 cut(s)	1971
HhaI	GCGC	3 cut(s)	730, 784, 1761
Hin1I	GRCGYC	1 cut(s)	413
Hin6I	GCGC	3 cut(s)	728, 782, 1759
HinP1I	GCGC	3 cut(s)	728, 782, 1759
HindIII	AAGCTT	3 cut(s)	2224, 2639, 2661
HinfI	GANTC	4 cut(s)	419, 854, 1708, 2464
HpaII	CCGG	6 cut(s)	145, 446, 507, 817, 1449, 1644
HphI	GGTGA	2 cut(s)	442, 1103
Hpy166II	GTNNAC	4 cut(s)	70, 214, 1513, 2114
Hpy8I	GTNNAC	4 cut(s)	70, 214, 1513, 2114
HpyAV	CCTTC	7 cut(s)	385, 547, 1021, 1095, 1151, 1433, 2850
HpyCH4III	ACNGT	6 cut(s)	54, 97, 601, 1251, 1654, 2635
HpyCH4IV	ACGT	4 cut(s)	413, 1081, 1151, 1318
HpyF10VI	GCNNNNNNNGC	9 cut(s)	158, 365, 731, 803, 1489, 1979, 2223, 2609, 2825
HpySE526I	ACGT	4 cut(s)	413, 1081, 1151, 1318
Hsp92I	GRCGYC	1 cut(s)	413
HspAI	GCGC	3 cut(s)	728, 782, 1759
KpnI	GGTACC	1 cut(s)	1449
Ksp22I	TGATCA	2 cut(s)	1929, 2938
LmnI	GCTCC	2 cut(s)	2069, 2504
Lsp1109I	GCAGC	4 cut(s)	161, 502, 511, 2519
MaeI	CTAG	8 cut(s)	113, 1638, 2369, 2910, 2915, 2927, 2958, 2962
MaeII	ACGT	4 cut(s)	413, 1081, 1151, 1318
MaeIII	GTNAC	7 cut(s)	15, 578, 1091, 1625, 2589, 2616, 2905
MbiI	CCGCTC	1 cut(s)	1228
MfeI	CAATTG	1 cut(s)	1668
MflI	RGATCY	5 cut(s)	889, 1048, 1061, 1724, 2668
MhlI	GDGCHC	2 cut(s)	72, 120
MlyI	GAGTC	2 cut(s)	1717, 2458
MmeI	TCCRAC	7 cut(s)	36, 728, 882, 1026, 1037, 1977, 2223
Mph1103I	ATGCAT	3 cut(s)	621, 697, 1494
MroXI	GAANNNNTTC	3 cut(s)	267, 1250, 2147
MslI	CAYNNNNRTG	4 cut(s)	624, 1613, 2415, 2709
MspA1I	CMGCKG	1 cut(s)	152
MspCI	CTTAAG	1 cut(s)	1106
MspI	CCGG	6 cut(s)	145, 446, 507, 817, 1449, 1644
MspR9I	CCNGG	7 cut(s)	146, 817, 1180, 1644, 1645, 1681, 2767
MunI	CAATTG	1 cut(s)	1668
Mva1269I	GAATGC	2 cut(s)	820, 2805
MvaI	CCWGG	3 cut(s)	1180, 1681, 2767
MvnI	CGCG	4 cut(s)	273, 605, 728, 1706
MwoI	GCNNNNNNNGC	9 cut(s)	158, 365, 731, 803, 1489, 1979, 2223, 2609, 2825
NciI	CCSGG	4 cut(s)	146, 817, 1644, 1645
NcoI	CCATGG	3 cut(s)	31, 1998, 2533
NdeI	CATATG	1 cut(s)	2074
NlaIV	GGNNCC	6 cut(s)	1050, 1184, 1447, 1726, 2326, 2500
NmuCI	GTSAC	5 cut(s)	15, 1091, 1625, 2616, 2905
NruI	TCGCGA	1 cut(s)	605
NsiI	ATGCAT	3 cut(s)	621, 697, 1494
NspI	RCATGY	3 cut(s)	374, 1542, 2708
NspV	TTCGAA	1 cut(s)	2757
PagI	TCATGA	2 cut(s)	85, 775
PceI	AGGCCT	1 cut(s)	2160
PciI	ACATGT	1 cut(s)	2704
PctI	GAATGC	2 cut(s)	820, 2805
PdmI	GAANNNNTTC	3 cut(s)	267, 1250, 2147
PfeI	GAWTC	2 cut(s)	419, 854
PflFI	GACNNNGTC	1 cut(s)	1409
PkrI	GCNGC	6 cut(s)	151, 501, 517, 727, 2329, 2509
PleI	GAGTC	2 cut(s)	1716, 2458
PmaCI	CACGTG	1 cut(s)	1082
PmlI	CACGTG	1 cut(s)	1082
PpsI	GAGTC	2 cut(s)	1716, 2458
Ppu21I	YACGTR	1 cut(s)	1082
PscI	ACATGT	1 cut(s)	2704
PshBI	ATTAAT	1 cut(s)	1572
PsiI	TTATAA	1 cut(s)	1070
Psp6I	CCWGG	3 cut(s)	1178, 1679, 2765
PspCI	CACGTG	1 cut(s)	1082
PspFI	CCCAGC	1 cut(s)	2524
PspGI	CCWGG	3 cut(s)	1178, 1679, 2765
PspN4I	GGNNCC	6 cut(s)	1050, 1184, 1447, 1726, 2326, 2500
PspPI	GGNCC	4 cut(s)	1183, 1646, 2114, 2325
PstI	CTGCAG	2 cut(s)	361, 1920
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	5 cut(s)	889, 1048, 1061, 1724, 2668
PsyI	GACNNNGTC	1 cut(s)	1409
PvuII	CAGCTG	1 cut(s)	152
RruI	TCGCGA	1 cut(s)	605
RseI	CAYNNNNRTG	4 cut(s)	624, 1613, 2415, 2709
SatI	GCNGC	6 cut(s)	150, 500, 516, 726, 2328, 2508
Sau96I	GGNCC	4 cut(s)	1183, 1646, 2114, 2325
SbfI	CCTGCAGG	1 cut(s)	361
ScaI	AGTACT	1 cut(s)	1567
SchI	GAGTC	2 cut(s)	1717, 2458
ScrFI	CCNGG	7 cut(s)	146, 817, 1180, 1644, 1645, 1681, 2767
SdaI	CCTGCAGG	1 cut(s)	361
SduI	GDGCHC	2 cut(s)	72, 120
SfcI	CTRYAG	3 cut(s)	357, 1916, 2106
SfuI	TTCGAA	1 cut(s)	2757
SinI	GGWCC	2 cut(s)	1183, 2114
SmaI	CCCGGG	1 cut(s)	1645
SmiMI	CAYNNNNRTG	4 cut(s)	624, 1613, 2415, 2709
SmlI	CTYRAG	2 cut(s)	1106, 1376
SmoI	CTYRAG	2 cut(s)	1106, 1376
SpeI	ACTAGT	2 cut(s)	2368, 2909
Sse8387I	CCTGCAGG	1 cut(s)	361
SseBI	AGGCCT	1 cut(s)	2160
SspI	AATATT	1 cut(s)	2494
SspMI	CTAG	8 cut(s)	113, 1638, 2369, 2910, 2915, 2927, 2958, 2962
StuI	AGGCCT	1 cut(s)	2160
StyD4I	CCNGG	7 cut(s)	144, 815, 1178, 1642, 1643, 1679, 2765
StyI	CCWWGG	3 cut(s)	31, 1998, 2533
TaaI	ACNGT	6 cut(s)	54, 97, 601, 1251, 1654, 2635
TaiI	ACGT	4 cut(s)	416, 1084, 1154, 1321
TaqI	TCGA	4 cut(s)	138, 1401, 1719, 2757
TatI	WGTACW	4 cut(s)	1555, 1565, 2403, 2443
TauI	GCSGC	2 cut(s)	728, 2330
TfiI	GAWTC	2 cut(s)	419, 854
TscAI	CASTG	2 cut(s)	43, 327
TseFI	GTSAC	5 cut(s)	15, 1091, 1625, 2616, 2905
TseI	GCWGC	4 cut(s)	149, 499, 515, 2507
Tsp45I	GTSAC	5 cut(s)	15, 1091, 1625, 2616, 2905
TspMI	CCCGGG	1 cut(s)	1643
TspRI	CASTG	2 cut(s)	43, 327
Tth111I	GACNNNGTC	1 cut(s)	1409
Vha464I	CTTAAG	1 cut(s)	1106
VneI	GTGCAC	1 cut(s)	68
VpaK11BI	GGWCC	2 cut(s)	1183, 2114
VspI	ATTAAT	1 cut(s)	1572
XapI	RAATTY	8 cut(s)	140, 292, 326, 485, 965, 1145, 1337, 1371
XceI	RCATGY	3 cut(s)	374, 1542, 2708
XmaI	CCCGGG	1 cut(s)	1643
XmnI	GAANNNNTTC	3 cut(s)	267, 1250, 2147
XspI	CTAG	8 cut(s)	113, 1638, 2369, 2910, 2915, 2927, 2958, 2962
ZraI	GACGTC	1 cut(s)	414
ZrmI	AGTACT	1 cut(s)	1567
Zsp2I	ATGCAT	3 cut(s)	621, 697, 1494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.