Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Reverse (-)

69599400 .. 69603887

Gene Structure 4488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG516700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2673 bp

ATGCTAGGGGAATCGTGGCCGTACGTACTTACAACTAGAAGATCAATGAAGCTCCCCTCGTTGACAGTGTTGCAGCATGTTTTTGTCATCTTTTTGGTTACAAGTGTGCTGGTACTTTCTAGTTTATTGATAGGAATCATCAAACGTATCGAGCATAATGTTTATGTACTGGCTCCCAGGGAGAGAGAGTTAATGAACTTTGTTCATAACCATTGCAGTGAGTCACTTATCCTCATTTTTGTGATGATTGCTACAATGGGTGTCTTCATCTTCAGTTACTCTTTCATAATGCTAACTGTTGCGAAACGGGAAATGCATCGTTATGCCACACTCATAGAGCAAAGGGAGAAAACTGAGCAAGCTGAGAGAAAGAGCATGAGGAAAAGTGATGCATTTGCTAAAGCAAGCCATGACATTCGTGCTGCGCTTGCTGGAATTATTAGTTGGATCAACTTTTGTAAAGATGATATTCATGATGCGCTTGATCTTCATGCTACAAATGCTGGAACTACCCGGCATTCTGAAATAGAGACAATCTTAACAAAAATAGATTCCAACTTAAAAAGACTGGATGTTCATGCAGAAGATCTTTTAGGTATATTGAACTCTGTTCTTGATAAAAGCAAAATTGAAGCAGGTAAGATGGTACTTGAAAATGAAGAATTTGATGTGGCACAGCTTGTTGAAGAGGTAGTGGATTTGTTTCTTCCAACAGCATCAATGAAGGGATTAGATGTGGTGTTGGATCCTTGTGATGGATCTGTTATAAAGTTTGCACGTGTGAGAGGTGACAGGGGAAGGCTTAAGCAGATACTAAACAACTTGCTAAGCAATGCTGTCAAATTTACGTCAGAAGGGCAAATCACAATCCGCACCTGGGTTCGAAAACCGAGTTTTAAGAATTCAATAACTGCTTCTCGTGAGCGGACTAATGGTTTCTTGAAACAGTTCTTGTGCTTGTTTAATTACAAGAACATGAACAATGATGACAAGGAAGTAGTGGATGGTTCTCAACGTGATCCAAATGCTTTGGAATTTGTTTTTGAGGTGGATGATACTGGTAGGGGAATTCTCAAGGAGAGGCAAAAATCGGTGTTCGAGGACTATGTCCAAGTCAAAGAGAAAGCACTTGGAGAAGGTGGTACCGGCTTAGGACTGGGAATTGTTCAATCTCTGGTGCGTTTGATGCATGGAGAAATAGGAATTGTGGACAAGGAGATTGGGGAAAGAGGGACATGCTTCAGGTTCAATATACTGCTAAGTACTATTAATGCCTGTGAGGATAGCATAAAAGTAGAACCAGACATTGAAATGGGAATTAGTGACTTAAACCCTAGTCCCGGGCCGACTGTCAATCAAACACCAATTGCAAGCCCCAAGTTGAACATTCGCAGTACCACCGCGAGTCCTAAGGTCGAGGGATCCTATGTTGTAATGCTGATTAAAAATGCAGAGCGCAGGAGAGTAATACAGAAGTTTATGGAGAGACTTGGGATAAAAGTATCAGTAGCAGAACGATGGGAACAACTTGCTCGTACTCTCCAGAACATAAAAAACAAGAAGGTTTACCATTCTCAACATAATTCCATATCAGGAATACCCGATTTGGGTCTGCAGGATTGCTTGATCAAATCCGCCTCATGCAACTCCAACTTCAGCTTTAATAGAGCAAAGGAAGCGTCTTTGATGAGTTCCATGGATGGATCAACAGATAACAACATTCTTTCTCTCTTTCATAAGAAGAGTAGTAGTAGTAGTAGTAGTAATCTTCGTGGAGCATATGATCGCTTCGTAATGCTACTTATTGATACTACAGGTGGACCACTCCCAGAACTATGCAAGATTGTGAATGATTTCAAAAGAGGCCTCCAAAATGGTTGGTACTGCAAGGTTGTTTGGTTATCAAGTCCATTTACTCATAGTGATTTAAGCTTCAACAGAGATATGTTGGATGGCGACGATGTTATCAAACACAAGCCTCTACATGGTACTTGTCTATATGAAGTTGTAAGACTTCTTCCAGAGTGCGGGGGCGCATTACCAAAAAGATCATCAGGTCAGGTTGCATCAAAACTAGTTTCCACAGCTCTTGGTTCATCAAGAAATCGGTACATTCATACCGATGATGACAACTCCTCTGACCAGATAGTACAAGAGAGTAGTAATTCACCAACTCTTCAACATCATCAATCTCCTAATAATATTGGCTCCAAATCAGCAAGTCAATCAGCCCCAGCAGACCATGGCAACAAACCCTTGACCGGGAAGAAAATCTTGGTTGCAGAGGACACAGCATCGTTACGCATGGTGGCTATGCAGGCTTTGTCACGATTGGGTGCAACTGTGAAGCTTTGTGAAAATGGAAGAGAAGCTTTGGATCTAATTCGCAATGATCTACTCAATCAAAGGAAACATGTCTATGACTATATACTGATGGATTGCCAGATGCCAGAAATGGATGGGTTCGAAGCGACCAGGGAAATCAGGAAAGAGGAGAAATCTTACAATGTTCGCATTCCGATCATCGCATTAACAGCTCATGCAAAAGGAGGCGAAGAAACAAGAAGGATGATGGAGGCTGGTATGGACGAACATTTAGAGAAAACCTCCATAGTGACTAGTCTAGGGGAAACACTAGCAAAGATTGATCATAGTACTAAAGCAACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

890

Amino Acids

99.32

Weight (kDa)

7.86

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	345 - 419	3.2e-12	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Response_reg	PF00072	758 - 870	2.8e-19	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	767
Acc36I	ACCTGC	1 cut(s)	626
Acc65I	GGTACC	1 cut(s)	1142
AccB1I	GGYRCC	1 cut(s)	1142
AccBSI	CCGCTC	1 cut(s)	925
AccII	CGCG	1 cut(s)	1403
AciI	CCGC	5 cut(s)	871, 925, 1401, 1635, 2028
AclWI	GGATC	9 cut(s)	455, 740, 753, 766, 1013, 1416, 1429, 1711, 2385
AcoI	YGGCCR	1 cut(s)	17
AcsI	RAATTY	5 cut(s)	662, 842, 901, 1034, 1068
AcuI	CTGAAG	3 cut(s)	256, 1225, 1639
AcvI	CACGTG	1 cut(s)	779
AfiI	CCNNNNNNNGG	8 cut(s)	755, 877, 1340, 1607, 1985, 2027, 2261, 2262
AflII	CTTAAG	1 cut(s)	803
AflIII	ACRYGT	2 cut(s)	778, 2413
AhlI	ACTAGT	2 cut(s)	2074, 2618
AjnI	CCWGG	3 cut(s)	176, 875, 2474
AjuI	GAANNNNNNNTTGG	4 cut(s)	427, 459, 2258, 2290
Alw26I	GTCTC	2 cut(s)	524, 1480
AlwI	GGATC	9 cut(s)	455, 740, 753, 766, 1013, 1416, 1429, 1711, 2385
Ama87I	CYCGRG	1 cut(s)	1340
AoxI	GGCC	3 cut(s)	17, 1343, 1864
ApeKI	GCWGC	2 cut(s)	73, 422
ApoI	RAATTY	5 cut(s)	662, 842, 901, 1034, 1068
ArsI	GACNNNNNNTTYG	2 cut(s)	1664, 1696
AseI	ATTAAT	1 cut(s)	1269
Asp700I	GAANNNNTTC	2 cut(s)	947, 1853
Asp718I	GGTACC	1 cut(s)	1142
AspLEI	GCGC	4 cut(s)	427, 481, 1458, 2036
AspS9I	GGNCC	2 cut(s)	1343, 1820
AsuC2I	CCSGG	4 cut(s)	514, 1341, 1342, 2263
AsuHPI	GGTGA	2 cut(s)	800, 2160
AsuII	TTCGAA	2 cut(s)	883, 2466
AvaI	CYCGRG	1 cut(s)	1340
AvaII	GGWCC	1 cut(s)	1820
AxyI	CCTNAGG	1 cut(s)	1410
BamHI	GGATCC	2 cut(s)	745, 1421
BanI	GGYRCC	1 cut(s)	1142
BarI	GAAGNNNNNNTAC	2 cut(s)	2001, 2033
BauI	CACGAG	1 cut(s)	918
BbrPI	CACGTG	1 cut(s)	779
BbsI	GAAGAC	1 cut(s)	256
BbvI	GCAGC	2 cut(s)	85, 409
BccI	CCATC	9 cut(s)	637, 749, 998, 1512, 1694, 1946, 2428, 2453, 2566
BceAI	ACGGC	1 cut(s)	4
BciT130I	CCWGG	3 cut(s)	178, 877, 2476
BclI	TGATCA	2 cut(s)	1626, 2647
BcnI	CCSGG	4 cut(s)	514, 1341, 1342, 2263
BcoDI	GTCTC	2 cut(s)	524, 1480
BcuI	ACTAGT	2 cut(s)	2074, 2618
BfmI	CTRYAG	2 cut(s)	1613, 1812
BfrI	CTTAAG	1 cut(s)	803
BfuAI	ACCTGC	1 cut(s)	626
BglII	AGATCT	1 cut(s)	586
BisI	GCNGC	2 cut(s)	74, 423
BlpI	GCTNAGC	1 cut(s)	827
BlsI	GCNGC	2 cut(s)	75, 424
BmcAI	AGTACT	2 cut(s)	1264, 2656
Bme1390I	CCNGG	7 cut(s)	178, 514, 877, 1341, 1342, 2263, 2476
Bme18I	GGWCC	1 cut(s)	1820
BmeT110I	CYCGRG	1 cut(s)	1340
BmgT120I	GGNCC	2 cut(s)	1343, 1820
BmiI	GGNNCC	5 cut(s)	174, 747, 1144, 1423, 2209
BmrFI	CCNGG	7 cut(s)	178, 514, 877, 1341, 1342, 2263, 2476
BmrI	ACTGGG	1 cut(s)	1166
BmsI	GCATC	8 cut(s)	325, 379, 466, 725, 1176, 2075, 2303, 2436
BmuI	ACTGGG	1 cut(s)	1166
BpiI	GAAGAC	1 cut(s)	256
BplI	GAGNNNNNCTC	2 cut(s)	2591, 2623
BpmI	CTGGAG	1 cut(s)	1526
Bpu10I	CCTNAGC	1 cut(s)	1150
Bpu1102I	GCTNAGC	1 cut(s)	827
Bpu14I	TTCGAA	2 cut(s)	883, 2466
BpuEI	CTTGAG	1 cut(s)	1058
BpuMI	CCSGG	4 cut(s)	514, 1341, 1342, 2263
BsaAI	YACGTR	2 cut(s)	25, 779
BsaBI	GATNNNNATC	1 cut(s)	134
BsaJI	CCNNGG	7 cut(s)	176, 177, 876, 1340, 1695, 2242, 2475
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	8 cut(s)	755, 877, 1340, 1607, 1985, 2027, 2261, 2262
Bse118I	RCCGGY	1 cut(s)	1145
Bse1I	ACTGG	4 cut(s)	174, 573, 1063, 1161
Bse21I	CCTNAGG	1 cut(s)	1410
Bse3DI	GCAATG	3 cut(s)	211, 838, 2395
Bse8I	GATNNNNATC	1 cut(s)	134
BseBI	CCWGG	3 cut(s)	178, 877, 2476
BseDI	CCNNGG	7 cut(s)	176, 177, 876, 1340, 1695, 2242, 2475
BseGI	GGATG	7 cut(s)	577, 1009, 1057, 1705, 1957, 2464, 2574
BseJI	GATNNNNATC	1 cut(s)	134
BseLI	CCNNNNNNNGG	8 cut(s)	755, 877, 1340, 1607, 1985, 2027, 2261, 2262
BseMI	GCAATG	3 cut(s)	211, 838, 2395
BseMII	CTCAG	2 cut(s)	345, 354
BseNI	ACTGG	4 cut(s)	174, 573, 1063, 1161
BseRI	GAGGAG	2 cut(s)	2125, 2507
BseXI	GCAGC	2 cut(s)	85, 409
BseYI	CCCAGC	1 cut(s)	2233
Bsh1236I	CGCG	1 cut(s)	1403
BshFI	GGCC	3 cut(s)	19, 1345, 1866
BshNI	GGYRCC	1 cut(s)	1142
BsiHKCI	CYCGRG	1 cut(s)	1340
BsiSI	CCGG	4 cut(s)	514, 1146, 1341, 2262
BsiWI	CGTACG	1 cut(s)	21
BslFI	GGGAC	2 cut(s)	1246, 1323
BslI	CCNNNNNNNGG	8 cut(s)	755, 877, 1340, 1607, 1985, 2027, 2261, 2262
BsmAI	GTCTC	2 cut(s)	524, 1480
BsmFI	GGGAC	2 cut(s)	1246, 1323
BsmI	GAATGC	2 cut(s)	517, 2514
BsnI	GGCC	3 cut(s)	19, 1345, 1866
BsoBI	CYCGRG	1 cut(s)	1340
Bsp119I	TTCGAA	2 cut(s)	883, 2466
Bsp1720I	GCTNAGC	1 cut(s)	827
Bsp19I	CCATGG	2 cut(s)	1695, 2242
BspACI	CCGC	5 cut(s)	871, 925, 1401, 1635, 2028
BspANI	GGCC	3 cut(s)	19, 1345, 1866
BspCNI	CTCAG	2 cut(s)	346, 355
BspFNI	CGCG	1 cut(s)	1403
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	5 cut(s)	174, 747, 1144, 1423, 2209
BspMAI	CTGCAG	1 cut(s)	1617
BspMI	ACCTGC	1 cut(s)	626
BspPI	GGATC	9 cut(s)	455, 740, 753, 766, 1013, 1416, 1429, 1711, 2385
BspT104I	TTCGAA	2 cut(s)	883, 2466
BspT107I	GGYRCC	1 cut(s)	1142
BspTI	CTTAAG	1 cut(s)	803
BsrBI	CCGCTC	1 cut(s)	925
BsrDI	GCAATG	3 cut(s)	211, 838, 2395
BsrFI	RCCGGY	1 cut(s)	1145
BsrI	ACTGG	4 cut(s)	174, 573, 1063, 1161
BssAI	RCCGGY	1 cut(s)	1145
BssECI	CCNNGG	7 cut(s)	176, 177, 876, 1340, 1695, 2242, 2475
BssSI	CACGAG	1 cut(s)	918
BssT1I	CCWWGG	2 cut(s)	1695, 2242
Bst2BI	CACGAG	1 cut(s)	918
Bst2UI	CCWGG	3 cut(s)	178, 877, 2476
Bst4CI	ACNGT	5 cut(s)	67, 298, 948, 1351, 2344
Bst6I	CTCTTC	4 cut(s)	681, 1736, 2181, 2359
BstAFI	CTTAAG	1 cut(s)	803
BstBAI	YACGTR	2 cut(s)	25, 779
BstBI	TTCGAA	2 cut(s)	883, 2466
BstC8I	GCNNGC	5 cut(s)	360, 406, 429, 1372, 2319
BstDEI	CTNAG	6 cut(s)	354, 363, 827, 1150, 1259, 1410
BstDSI	CCRYGG	2 cut(s)	1695, 2242
BstF5I	GGATG	7 cut(s)	577, 1009, 1057, 1705, 1957, 2464, 2574
BstFNI	CGCG	1 cut(s)	1403
BstHHI	GCGC	4 cut(s)	427, 481, 1458, 2036
BstMAI	GTCTC	2 cut(s)	524, 1480
BstMWI	GCNNNNNNNGC	6 cut(s)	428, 500, 1186, 1676, 2318, 2534
BstNI	CCWGG	3 cut(s)	178, 877, 2476
BstNSI	RCATGY	3 cut(s)	80, 1239, 2417
BstSCI	CCNGG	7 cut(s)	176, 512, 875, 1339, 1340, 2261, 2474
BstSFI	CTRYAG	2 cut(s)	1613, 1812
BstSNI	TACGTA	1 cut(s)	25
BstUI	CGCG	1 cut(s)	1403
BstV1I	GCAGC	2 cut(s)	85, 409
BstV2I	GAAGAC	1 cut(s)	256
BstX2I	RGATCY	5 cut(s)	586, 745, 758, 1421, 2377
BstYI	RGATCY	5 cut(s)	586, 745, 758, 1421, 2377
Bsu36I	CCTNAGG	1 cut(s)	1410
BsuRI	GGCC	3 cut(s)	19, 1345, 1866
BtgI	CCRYGG	2 cut(s)	1695, 2242
BtgZI	GCGATG	1 cut(s)	2509
BtsCI	GGATG	7 cut(s)	577, 1009, 1057, 1705, 1957, 2464, 2574
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	2 cut(s)	72, 223
BveI	ACCTGC	1 cut(s)	626
Cac8I	GCNNGC	5 cut(s)	360, 406, 429, 1372, 2319
CciI	TCATGA	1 cut(s)	472
CfoI	GCGC	4 cut(s)	427, 481, 1458, 2036
Cfr10I	RCCGGY	1 cut(s)	1145
Cfr13I	GGNCC	2 cut(s)	1343, 1820
Cfr9I	CCCGGG	1 cut(s)	1340
CseI	GACGC	1 cut(s)	1668
CspCI	CAANNNNNGTGG	2 cut(s)	2071, 2106
DdeI	CTNAG	6 cut(s)	354, 363, 827, 1150, 1259, 1410
EaeI	YGGCCR	1 cut(s)	17
Eam1104I	CTCTTC	4 cut(s)	681, 1736, 2181, 2359
EarI	CTCTTC	4 cut(s)	681, 1736, 2181, 2359
EciI	GGCGGA	1 cut(s)	1624
Eco105I	TACGTA	1 cut(s)	25
Eco130I	CCWWGG	2 cut(s)	1695, 2242
Eco147I	AGGCCT	1 cut(s)	1866
Eco47I	GGWCC	1 cut(s)	1820
Eco57I	CTGAAG	3 cut(s)	256, 1225, 1639
Eco72I	CACGTG	1 cut(s)	779
Eco81I	CCTNAGG	1 cut(s)	1410
Eco88I	CYCGRG	1 cut(s)	1340
EcoRI	GAATTC	2 cut(s)	901, 1068
EcoRII	CCWGG	3 cut(s)	176, 875, 2474
EcoT14I	CCWWGG	2 cut(s)	1695, 2242
EcoT22I	ATGCAT	3 cut(s)	318, 394, 1191
ErhI	CCWWGG	2 cut(s)	1695, 2242
FalI	AAGNNNNNCTT	4 cut(s)	2258, 2290, 2356, 2388
FaqI	GGGAC	2 cut(s)	1246, 1323
FauI	CCCGC	1 cut(s)	2021
FauNDI	CATATG	1 cut(s)	1780
FbaI	TGATCA	2 cut(s)	1626, 2647
Fnu4HI	GCNGC	2 cut(s)	74, 423
FokI	GGATG	7 cut(s)	584, 1016, 1064, 1712, 1964, 2471, 2581
Fsp4HI	GCNGC	2 cut(s)	74, 423
GlaI	GCGC	4 cut(s)	426, 480, 1457, 2035
GluI	GCNGC	2 cut(s)	74, 423
GsaI	CCCAGC	1 cut(s)	2237
GsuI	CTGGAG	1 cut(s)	1526
HaeIII	GGCC	3 cut(s)	19, 1345, 1866
HapII	CCGG	4 cut(s)	514, 1146, 1341, 2262
HgaI	GACGC	1 cut(s)	1668
HhaI	GCGC	4 cut(s)	427, 481, 1458, 2036
Hin6I	GCGC	4 cut(s)	425, 479, 1456, 2034
HinP1I	GCGC	4 cut(s)	425, 479, 1456, 2034
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HindIII	AAGCTT	3 cut(s)	1930, 2348, 2370
HinfI	GANTC	5 cut(s)	11, 135, 221, 551, 1405
HpaII	CCGG	4 cut(s)	514, 1146, 1341, 2262
HphI	GGTGA	2 cut(s)	800, 2160
Hpy166II	GTNNAC	4 cut(s)	63, 1210, 1567, 1820
Hpy188I	TCNGA	4 cut(s)	523, 853, 2140, 2520
Hpy8I	GTNNAC	4 cut(s)	63, 1210, 1567, 1820
Hpy99I	CGWCG	1 cut(s)	1961
HpyAV	CCTTC	6 cut(s)	718, 792, 848, 1130, 1555, 2559
HpyCH4III	ACNGT	5 cut(s)	67, 298, 948, 1351, 2344
HpyCH4IV	ACGT	5 cut(s)	24, 145, 778, 848, 1015
HpyF10VI	GCNNNNNNNGC	6 cut(s)	428, 500, 1186, 1676, 2318, 2534
HpyF3I	CTNAG	6 cut(s)	354, 363, 827, 1150, 1259, 1410
HpySE526I	ACGT	5 cut(s)	24, 145, 778, 848, 1015
HspAI	GCGC	4 cut(s)	425, 479, 1456, 2034
KpnI	GGTACC	1 cut(s)	1146
Ksp22I	TGATCA	2 cut(s)	1626, 2647
LmnI	GCTCC	4 cut(s)	57, 178, 1775, 2213
Lsp1109I	GCAGC	2 cut(s)	85, 409
LweI	GCATC	8 cut(s)	325, 379, 466, 725, 1176, 2075, 2303, 2436
MaeII	ACGT	5 cut(s)	24, 145, 778, 848, 1015
MaeIII	GTNAC	8 cut(s)	97, 222, 275, 788, 1322, 2298, 2325, 2614
MbiI	CCGCTC	1 cut(s)	925
MfeI	CAATTG	1 cut(s)	1365
MflI	RGATCY	5 cut(s)	586, 745, 758, 1421, 2377
MlyI	GAGTC	2 cut(s)	230, 1414
MmeI	TCCRAC	6 cut(s)	425, 579, 723, 734, 1674, 1929
Mph1103I	ATGCAT	3 cut(s)	318, 394, 1191
MroXI	GAANNNNTTC	2 cut(s)	947, 1853
MslI	CAYNNNNRTG	6 cut(s)	216, 239, 321, 1310, 2121, 2418
MspCI	CTTAAG	1 cut(s)	803
MspI	CCGG	4 cut(s)	514, 1146, 1341, 2262
MspR9I	CCNGG	7 cut(s)	178, 514, 877, 1341, 1342, 2263, 2476
MunI	CAATTG	1 cut(s)	1365
Mva1269I	GAATGC	2 cut(s)	517, 2514
MvaI	CCWGG	3 cut(s)	178, 877, 2476
MvnI	CGCG	1 cut(s)	1403
MwoI	GCNNNNNNNGC	6 cut(s)	428, 500, 1186, 1676, 2318, 2534
NciI	CCSGG	4 cut(s)	514, 1341, 1342, 2263
NcoI	CCATGG	2 cut(s)	1695, 2242
NdeI	CATATG	1 cut(s)	1780
NlaIV	GGNNCC	5 cut(s)	174, 747, 1144, 1423, 2209
NmuCI	GTSAC	5 cut(s)	222, 788, 1322, 2325, 2614
NsiI	ATGCAT	3 cut(s)	318, 394, 1191
NspI	RCATGY	3 cut(s)	80, 1239, 2417
NspV	TTCGAA	2 cut(s)	883, 2466
PagI	TCATGA	1 cut(s)	472
PasI	CCCWGGG	1 cut(s)	177
PceI	AGGCCT	1 cut(s)	1866
PciI	ACATGT	1 cut(s)	2413
PctI	GAATGC	2 cut(s)	517, 2514
PdmI	GAANNNNTTC	2 cut(s)	947, 1853
PfeI	GAWTC	3 cut(s)	11, 135, 551
Pfl23II	CGTACG	1 cut(s)	21
PflFI	GACNNNGTC	1 cut(s)	1106
PkrI	GCNGC	2 cut(s)	75, 424
PleI	GAGTC	2 cut(s)	229, 1413
PmaCI	CACGTG	1 cut(s)	779
PmlI	CACGTG	1 cut(s)	779
PpsI	GAGTC	2 cut(s)	229, 1413
Ppu21I	YACGTR	2 cut(s)	25, 779
PscI	ACATGT	1 cut(s)	2413
PshBI	ATTAAT	1 cut(s)	1269
PsiI	TTATAA	1 cut(s)	767
Psp6I	CCWGG	3 cut(s)	176, 875, 2474
PspCI	CACGTG	1 cut(s)	779
PspFI	CCCAGC	1 cut(s)	2233
PspGI	CCWGG	3 cut(s)	176, 875, 2474
PspLI	CGTACG	1 cut(s)	21
PspN4I	GGNNCC	5 cut(s)	174, 747, 1144, 1423, 2209
PspPI	GGNCC	2 cut(s)	1343, 1820
PstI	CTGCAG	1 cut(s)	1617
PsuI	RGATCY	5 cut(s)	586, 745, 758, 1421, 2377
PsyI	GACNNNGTC	1 cut(s)	1106
RseI	CAYNNNNRTG	6 cut(s)	216, 239, 321, 1310, 2121, 2418
SatI	GCNGC	2 cut(s)	74, 423
Sau96I	GGNCC	2 cut(s)	1343, 1820
ScaI	AGTACT	2 cut(s)	1264, 2656
SchI	GAGTC	2 cut(s)	230, 1414
ScrFI	CCNGG	7 cut(s)	178, 514, 877, 1341, 1342, 2263, 2476
SfaNI	GCATC	8 cut(s)	325, 379, 466, 725, 1176, 2075, 2303, 2436
SfcI	CTRYAG	2 cut(s)	1613, 1812
SfuI	TTCGAA	2 cut(s)	883, 2466
SinI	GGWCC	1 cut(s)	1820
SmaI	CCCGGG	1 cut(s)	1342
SmiMI	CAYNNNNRTG	6 cut(s)	216, 239, 321, 1310, 2121, 2418
SmlI	CTYRAG	2 cut(s)	803, 1073
SmoI	CTYRAG	2 cut(s)	803, 1073
SnaBI	TACGTA	1 cut(s)	25
SpeI	ACTAGT	2 cut(s)	2074, 2618
SseBI	AGGCCT	1 cut(s)	1866
SsiI	CCGC	5 cut(s)	871, 925, 1401, 1635, 2028
SspI	AATATT	1 cut(s)	2203
StuI	AGGCCT	1 cut(s)	1866
StyD4I	CCNGG	7 cut(s)	176, 512, 875, 1339, 1340, 2261, 2474
StyI	CCWWGG	2 cut(s)	1695, 2242
TaaI	ACNGT	5 cut(s)	67, 298, 948, 1351, 2344
TaiI	ACGT	5 cut(s)	27, 148, 781, 851, 1018
TaqI	TCGA	5 cut(s)	150, 883, 1098, 1416, 2466
TatI	WGTACW	4 cut(s)	166, 1262, 2149, 2654
TfiI	GAWTC	3 cut(s)	11, 135, 551
TscAI	CASTG	2 cut(s)	72, 223
TseFI	GTSAC	5 cut(s)	222, 788, 1322, 2325, 2614
TseI	GCWGC	2 cut(s)	73, 422
Tsp45I	GTSAC	5 cut(s)	222, 788, 1322, 2325, 2614
TspMI	CCCGGG	1 cut(s)	1340
TspRI	CASTG	2 cut(s)	72, 223
Tth111I	GACNNNGTC	1 cut(s)	1106
Vha464I	CTTAAG	1 cut(s)	803
VpaK11BI	GGWCC	1 cut(s)	1820
VspI	ATTAAT	1 cut(s)	1269
XapI	RAATTY	5 cut(s)	662, 842, 901, 1034, 1068
XceI	RCATGY	3 cut(s)	80, 1239, 2417
XmaI	CCCGGG	1 cut(s)	1340
XmnI	GAANNNNTTC	2 cut(s)	947, 1853
ZrmI	AGTACT	2 cut(s)	1264, 2656
Zsp2I	ATGCAT	3 cut(s)	318, 394, 1191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.