Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000934

Physical Location & Seq

Genomic Coordinates Forward (+)

604947 .. 606340

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG005300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGAAAAAATCTGATGCAATTACAAGTGCAAGCCATGATGTTCGTAATGCTCTTGCTTGCATGACTGAATTGATCAAAATATCCTTTGATGAAGTTGCCCAGGGCTCTGAAATAAGGGAATATCTGACACAAATGGACGCATGTACAAAAGACCTCTTAGGTATGTTGAACTCTATTCTTGATAAAAGCAAAATTGAAGTGGGTAAGATGGTACTTGAAGACGAAGAGTTTGACATATCGCGACTTGTTAAGGAGGTAGTTGATTTCTTTCTTCCATTGGGTTTAAAGAAGGGGATAGATGTTGTGTTGGATCCTCATGATTGCTCTCTTCTAAAGTTTGCACATGTGAAAGGTGACAAGGGAAGGCTTAAGCAGATATTATGCAACTTATTAAGGAATGCTGTCAAATTTACTTCAGAGGGACATGTAACAGTTCGTGCTTGGGTTCAGAAACCTAGTTTCATGAATTCAATCACTGCTGCTAATTCTGATTTGAATAATAGTTTCTTGAAGAATTTGTTTTGTTTTTTGAACTACAAGAACATGACCAAAGAACAATTAGATGGCATCAAAGCAGTGAAGGGGGTTCAAAATGATCCAAATTTTTTGGAATTTGTTTTTGAGGTGGATGGTACAGGGAGGGGAATTCCCAAGGAGAAGCAAAAAGAAGTGTTTGAAAACTATGTTCAAGTCAAAGAAAAAGCTCATGGAGAAGGAGGTACTGGCTTAGGACCTGGTATTGTTCAGTCTCTAGTACGCTTGATGCACGGAGAAATAGGAACTGTGGACAAGGAGATTGGTGAAAAAGGGACATGCTTCAGGTTTAATGTTCTCCTGAGAGCTATTACTGTGTATGAGGATCATATAAAATTACAACAAGACCTTGAATTGGGAGGTGACCCTAATTATGATGACAGAGATCAACAATTGGGATTAATAGCAGCTATACGCACACCAAATGCAAACTCCGGGTTGACCATAGTTCCTAGTCTGAAGCTCACACCACTTGGAAGCCCCCGGTTGAATGTATTCCACAGCACTCCTAGTAGTCCTAAGGTACAGGAATCCATTGTTGTACTGCTGATTAAAAATGAAGAGCGACGGAGAATAGTACACCAGTTCATGAAGGGTAGCCTTGGGATAAAGGTATTAGTGGTAGAACAGTGGGGACAACTAGCTCATTCTCTCAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019538 GO:0023052 GO:0030054 GO:0032501 GO:0032502 GO:0032870 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046983 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HATPase_c HisKA Response_reg

Protein Analysis

398

Amino Acids

44.36

Weight (kDa)

7.64

Isoelectric Point (pI)

27.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HisKA	PF00512	3 - 66	7.6e-06	His Kinase A (phospho-acceptor) domain
HATPase_c	PF02518	204 - 278	4.1e-11	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000934)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02090
fragaria_vesca	FvH4_2g00520 FvH4_5g39340 FvH4_5g39350
malus_domestica	MD03G1295900.v1.1 MD03G1296400.v1.1 MD11G1315000.v1.1 MD11G1315800.v1.1
prunus_persica	Prupe.8G031600_v2.0.a1 Prupe.8G270900_v2.0.a1 Prupe.8G271500_v2.0.a1
pyrus_communis	pycom03g23400 pycom03g23460 pycom11g27520 pycom11g27570
rosa_chinensis	RchiOBHm_Chr6g0250521 RchiOBHm_Chr6g0250591 RchiOBHm_Chr6g0250601 RchiOBHm_Chr6g0250841 RchiOBHm_Chr7g0241621 RchiOBHm_Chr7g0241631
rosa_laevigata	RLG00000000559 RLG00000000560 RLG00000015494 RLG00000015498 RLG00000015520 RLG00000015530 RLG00000015533 RLG00000015535
rosa_multiflora	Rmu_co8325851.1_g000001 Rmu_co8374241.1_g000001 Rmu_co8391029.1_g000001 Rmu_sc0002268.1_g000012 Rmu_sc0002268.1_g000013 Rmu_sc0007248.1_g000005 Rmu_sc0033402.1_g000001
rosa_roxburghii	Rroxscaffold_3G00218870 Rroxscaffold_7G00217140 Rroxscaffold_7G00217190
rosa_rugosa	Rorug07G0345700 Rorug07G0345800
rosa_samantha	Rh6AG006300 Rh6AG007200 Rh6AG007300 Rh6BG003700 Rh6BG004300 Rh6CG004500 Rh6DG004500 Rh6DG005300 Rh7AG500200 Rh7AG500300 Rh7BG471300 Rh7BG471400 Rh7CG516700 Rh7CG516800 Rh7DG485200 Rh7DG485300
rosa_wichuraiana	Rw0G020910 Rw6G000690 Rw6G000760 Rw6G000800 Rw6G000850 Rw7G042250 Rw7G042260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	241
AclWI	GGATC	4 cut(s)	305, 318, 590, 867
AcsI	RAATTY	6 cut(s)	407, 466, 514, 601, 611, 645
AcuI	CTGAAG	3 cut(s)	399, 802, 1013
AfaI	GTAC	8 cut(s)	145, 213, 634, 721, 756, 1059, 1077, 1113
AfiI	CCNNNNNNNGG	1 cut(s)	889
AflII	CTTAAG	1 cut(s)	368
AflIII	ACRYGT	2 cut(s)	343, 424
AjnI	CCWGG	2 cut(s)	99, 733
AluBI	AGCT	5 cut(s)	704, 842, 944, 997, 1178
AluI	AGCT	5 cut(s)	704, 842, 944, 997, 1178
Alw26I	GTCTC	1 cut(s)	753
AlwI	GGATC	4 cut(s)	305, 318, 590, 867
ApeKI	GCWGC	2 cut(s)	479, 941
ApoI	RAATTY	6 cut(s)	407, 466, 514, 601, 611, 645
ArsI	GACNNNNNNTTYG	2 cut(s)	212, 244
AseI	ATTAAT	1 cut(s)	935
Asp700I	GAANNNNTTC	1 cut(s)	1028
AspS9I	GGNCC	1 cut(s)	731
AsuC2I	CCSGG	2 cut(s)	970, 1018
AsuHPI	GGTGA	3 cut(s)	365, 812, 908
AvaII	GGWCC	1 cut(s)	731
AxyI	CCTNAGG	1 cut(s)	1053
BamHI	GGATCC	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	466, 953
BccI	CCATC	3 cut(s)	202, 557, 623
BciT130I	CCWGG	2 cut(s)	101, 735
BclI	TGATCA	1 cut(s)	72
BcnI	CCSGG	2 cut(s)	970, 1018
BcoDI	GTCTC	1 cut(s)	753
BfaI	CTAG	5 cut(s)	456, 752, 987, 1044, 1175
BfrI	CTTAAG	1 cut(s)	368
BisI	GCNGC	2 cut(s)	480, 942
BlsI	GCNGC	2 cut(s)	481, 943
Bme1390I	CCNGG	4 cut(s)	101, 735, 970, 1018
Bme18I	GGWCC	1 cut(s)	731
BmgT120I	GGNCC	1 cut(s)	731
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	4 cut(s)	101, 735, 970, 1018
BmsI	GCATC	3 cut(s)	4, 576, 753
BpiI	GAAGAC	1 cut(s)	225
Bpu10I	CCTNAGC	1 cut(s)	727
BpuEI	CTTGAG	1 cut(s)	1172
BpuMI	CCSGG	2 cut(s)	970, 1018
BsaJI	CCNNGG	5 cut(s)	99, 100, 651, 1016, 1135
Bsc4I	CCNNNNNNNGG	1 cut(s)	889
Bse1I	ACTGG	2 cut(s)	727, 1117
Bse21I	CCTNAGG	1 cut(s)	1053
BseBI	CCWGG	2 cut(s)	101, 735
BseDI	CCNNGG	5 cut(s)	99, 100, 651, 1016, 1135
BseGI	GGATG	1 cut(s)	634
BseLI	CCNNNNNNNGG	1 cut(s)	889
BseMII	CTCAG	1 cut(s)	827
BseNI	ACTGG	2 cut(s)	727, 1117
BseXI	GCAGC	2 cut(s)	466, 953
Bsh1236I	CGCG	1 cut(s)	241
BsiSI	CCGG	2 cut(s)	969, 1018
BslFI	GGGAC	3 cut(s)	435, 823, 1182
BslI	CCNNNNNNNGG	1 cut(s)	889
BsmAI	GTCTC	1 cut(s)	753
BsmFI	GGGAC	3 cut(s)	435, 823, 1182
BsmI	GAATGC	1 cut(s)	403
Bsp1286I	GDGCHC	1 cut(s)	107
Bsp1407I	TGTACA	1 cut(s)	143
Bsp143I	GATC	5 cut(s)	72, 310, 595, 859, 919
Bsp68I	TCGCGA	1 cut(s)	241
BspCNI	CTCAG	1 cut(s)	828
BspFNI	CGCG	1 cut(s)	241
BspHI	TCATGA	3 cut(s)	316, 462, 1122
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	4 cut(s)	305, 318, 590, 867
BspQI	GCTCTTC	1 cut(s)	1089
BspTI	CTTAAG	1 cut(s)	368
BsrGI	TGTACA	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	727, 1117
BssECI	CCNNGG	5 cut(s)	99, 100, 651, 1016, 1135
BssMI	GATC	5 cut(s)	72, 310, 595, 859, 919
BssT1I	CCWWGG	2 cut(s)	651, 1135
Bst2UI	CCWGG	2 cut(s)	101, 735
Bst4CI	ACNGT	4 cut(s)	433, 784, 850, 1164
Bst6I	CTCTTC	3 cut(s)	219, 333, 1089
BstAFI	CTTAAG	1 cut(s)	368
BstAUI	TGTACA	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	31, 58
BstDEI	CTNAG	4 cut(s)	157, 727, 836, 1053
BstEII	GGTNACC	1 cut(s)	896
BstF5I	GGATG	1 cut(s)	634
BstFNI	CGCG	1 cut(s)	241
BstKTI	GATC	5 cut(s)	75, 313, 598, 862, 922
BstMAI	GTCTC	1 cut(s)	753
BstMBI	GATC	5 cut(s)	72, 310, 595, 859, 919
BstNI	CCWGG	2 cut(s)	101, 735
BstNSI	RCATGY	4 cut(s)	144, 347, 428, 816
BstPI	GGTNACC	1 cut(s)	896
BstSCI	CCNGG	4 cut(s)	99, 733, 968, 1016
BstUI	CGCG	1 cut(s)	241
BstV1I	GCAGC	2 cut(s)	466, 953
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
Bsu36I	CCTNAGG	1 cut(s)	1053
BtsCI	GGATG	1 cut(s)	634
BtsI	GCAGTG	2 cut(s)	474, 582
BtsIMutI	CAGTG	3 cut(s)	474, 582, 1169
BtuMI	TCGCGA	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	31, 58
CciI	TCATGA	3 cut(s)	316, 462, 1122
Cfr13I	GGNCC	1 cut(s)	731
CseI	GACGC	1 cut(s)	146
CsiI	ACCWGGT	1 cut(s)	733
Csp6I	GTAC	8 cut(s)	144, 212, 633, 720, 755, 1058, 1076, 1112
CviQI	GTAC	8 cut(s)	144, 212, 633, 720, 755, 1058, 1076, 1112
DdeI	CTNAG	4 cut(s)	157, 727, 836, 1053
DpnI	GATC	5 cut(s)	74, 312, 597, 861, 921
DpnII	GATC	5 cut(s)	72, 310, 595, 859, 919
DraI	TTTAAA	1 cut(s)	285
Eam1104I	CTCTTC	3 cut(s)	219, 333, 1089
EarI	CTCTTC	3 cut(s)	219, 333, 1089
Eco130I	CCWWGG	2 cut(s)	651, 1135
Eco24I	GRGCYC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	731
Eco57I	CTGAAG	3 cut(s)	399, 802, 1013
Eco81I	CCTNAGG	1 cut(s)	1053
Eco91I	GGTNACC	1 cut(s)	896
EcoO109I	RGGNCCY	1 cut(s)	731
EcoO65I	GGTNACC	1 cut(s)	896
EcoRI	GAATTC	2 cut(s)	466, 645
EcoRII	CCWGG	2 cut(s)	99, 733
EcoT14I	CCWWGG	2 cut(s)	651, 1135
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	2 cut(s)	651, 1135
FaqI	GGGAC	3 cut(s)	435, 823, 1182
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	480, 942
FokI	GGATG	1 cut(s)	641
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	2 cut(s)	480, 942
FspBI	CTAG	5 cut(s)	456, 752, 987, 1044, 1175
GluI	GCNGC	2 cut(s)	480, 942
HapII	CCGG	2 cut(s)	969, 1018
HgaI	GACGC	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	975
HindII	GTYRAC	1 cut(s)	975
HinfI	GANTC	1 cut(s)	1064
HpaII	CCGG	2 cut(s)	969, 1018
HphI	GGTGA	3 cut(s)	365, 812, 908
Hpy166II	GTNNAC	3 cut(s)	787, 975, 1114
Hpy188I	TCNGA	7 cut(s)	13, 109, 126, 418, 450, 490, 993
Hpy188III	TCNNGA	8 cut(s)	179, 240, 317, 463, 508, 835, 1123, 1189
Hpy8I	GTNNAC	3 cut(s)	787, 975, 1114
Hpy99I	CGWCG	1 cut(s)	1104
HpyAV	CCTTC	5 cut(s)	283, 357, 574, 707, 1120
HpyCH4III	ACNGT	4 cut(s)	433, 784, 850, 1164
HpyCH4V	TGCA	7 cut(s)	17, 29, 60, 341, 384, 766, 962
HpyF3I	CTNAG	4 cut(s)	157, 727, 836, 1053
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	5 cut(s)	72, 310, 595, 859, 919
LguI	GCTCTTC	1 cut(s)	1089
Lsp1109I	GCAGC	2 cut(s)	466, 953
LweI	GCATC	3 cut(s)	4, 576, 753
MabI	ACCWGGT	1 cut(s)	733
MaeI	CTAG	5 cut(s)	456, 752, 987, 1044, 1175
MaeIII	GTNAC	3 cut(s)	353, 427, 896
MalI	GATC	5 cut(s)	74, 312, 597, 861, 921
MboI	GATC	5 cut(s)	72, 310, 595, 859, 919
MboII	GAAGA	6 cut(s)	230, 236, 263, 320, 523, 1106
MfeI	CAATTG	1 cut(s)	926
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	9 cut(s)	164, 247, 324, 412, 616, 633, 710, 850, 887
MroXI	GAANNNNTTC	1 cut(s)	1028
MseI	TTAA	7 cut(s)	249, 284, 369, 392, 825, 935, 1086
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	2 cut(s)	969, 1018
MspR9I	CCNGG	4 cut(s)	101, 735, 970, 1018
MunI	CAATTG	1 cut(s)	926
Mva1269I	GAATGC	1 cut(s)	403
MvaI	CCWGG	2 cut(s)	101, 735
MvnI	CGCG	1 cut(s)	241
NciI	CCSGG	2 cut(s)	970, 1018
NdeII	GATC	5 cut(s)	72, 310, 595, 859, 919
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	2 cut(s)	353, 896
NruI	TCGCGA	1 cut(s)	241
NspI	RCATGY	4 cut(s)	144, 347, 428, 816
PagI	TCATGA	3 cut(s)	316, 462, 1122
PasI	CCCWGGG	1 cut(s)	100
PciI	ACATGT	2 cut(s)	343, 424
PciSI	GCTCTTC	1 cut(s)	1089
PctI	GAATGC	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	1028
PfeI	GAWTC	1 cut(s)	1064
PkrI	GCNGC	2 cut(s)	481, 943
PpuMI	RGGWCCY	1 cut(s)	731
PscI	ACATGT	2 cut(s)	343, 424
PshBI	ATTAAT	1 cut(s)	935
Psp5II	RGGWCCY	1 cut(s)	731
Psp6I	CCWGG	2 cut(s)	99, 733
PspEI	GGTNACC	1 cut(s)	896
PspGI	CCWGG	2 cut(s)	99, 733
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	731
PspPPI	RGGWCCY	1 cut(s)	731
PsuI	RGATCY	1 cut(s)	310
RruI	TCGCGA	1 cut(s)	241
RsaI	GTAC	8 cut(s)	145, 213, 634, 721, 756, 1059, 1077, 1113
RsaNI	GTAC	8 cut(s)	144, 212, 633, 720, 755, 1058, 1076, 1112
SapI	GCTCTTC	1 cut(s)	1089
SaqAI	TTAA	7 cut(s)	249, 284, 369, 392, 825, 935, 1086
SatI	GCNGC	2 cut(s)	480, 942
Sau3AI	GATC	5 cut(s)	72, 310, 595, 859, 919
Sau96I	GGNCC	1 cut(s)	731
ScrFI	CCNGG	4 cut(s)	101, 735, 970, 1018
SduI	GDGCHC	1 cut(s)	107
SexAI	ACCWGGT	1 cut(s)	733
SfaNI	GCATC	3 cut(s)	4, 576, 753
SinI	GGWCC	1 cut(s)	731
SmlI	CTYRAG	2 cut(s)	368, 1187
SmoI	CTYRAG	2 cut(s)	368, 1187
SspMI	CTAG	5 cut(s)	456, 752, 987, 1044, 1175
StyD4I	CCNGG	4 cut(s)	99, 733, 968, 1016
StyI	CCWWGG	2 cut(s)	651, 1135
TaaI	ACNGT	4 cut(s)	433, 784, 850, 1164
TatI	WGTACW	3 cut(s)	143, 1075, 1111
TfiI	GAWTC	1 cut(s)	1064
Tru1I	TTAA	7 cut(s)	249, 284, 369, 392, 825, 935, 1086
Tru9I	TTAA	7 cut(s)	249, 284, 369, 392, 825, 935, 1086
TscAI	CASTG	3 cut(s)	481, 582, 1169
TseFI	GTSAC	2 cut(s)	353, 896
TseI	GCWGC	2 cut(s)	479, 941
Tsp45I	GTSAC	2 cut(s)	353, 896
TspDTI	ATGAA	7 cut(s)	17, 105, 451, 479, 1107, 1111, 1139
TspGWI	ACGGA	2 cut(s)	783, 1117
TspRI	CASTG	3 cut(s)	481, 582, 1169
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	731
VspI	ATTAAT	1 cut(s)	935
XapI	RAATTY	6 cut(s)	407, 466, 514, 601, 611, 645
XceI	RCATGY	4 cut(s)	144, 347, 428, 816
XmnI	GAANNNNTTC	1 cut(s)	1028
XspI	CTAG	5 cut(s)	456, 752, 987, 1044, 1175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.