FvH4_2g04886

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001772
Physical Location & Seq
Forward (+)
3819261 .. 3821124
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04886.t1

Sequence Viewer

Length: 1167 bp
ATGGGTAAGTGGAAACCAGTTAAAGCGTTTGGATCTGGTCCTCCAATTTCTCATCTATTTTTTGCAGATGATTTAATTGTCTTTGCAAAAGCTAATTGTGCTCAAGCCAGAATTATAAAGAAATGCTTAGATGTCTTCTGTAATCTCTCTGGCCAGGAGGTTAGTTTCCAAAAATCCATGCTTTATTGTTCTCCTAATACTAGCAAGAAGATGGCTAGAAAAATTAGTAGGATTTGTGGGTCTGCTCTTACCGATAATTTGGGTAAATATCTTGGAATGCCTCTTATTCATTCCACTGTGACTAAGAAGACTTATAGACCTATTGTGGAGAAAGTTCAAAGTAAGTTAGTTGGTTGGAAAAGTAAGACTATAAATTTTGCTGGTCGACTCACTTTGGTTCAAGCTGTTACTTCAACTATTCCTATATATGCTATGCAAACAGCTAAGCTTCCAGTTGCAACCTGTGATTCTTTAGATAAGCTTTCAAGGGATTTTCTTTGGGGTGATTGTGATGAGAAGAAGAAATATGTGAAGTCTCAATCCTTGTTCTCTAGTGATTACTCATGCCCTTCTAGTTGCTCTAGTACTTGGAGAGGAGTGGTCCATGGGGTTAAGGTGTTGTCTCAAGGTCTCTATTGGAGGATTGGGGATGGTAGTTGCATTAATTTTTGGAATGATAATTGGTTAGGATCTGGTCCTCTTTGTTTGAAAGTGACAGACTCGATTATTAGAGATCCTTGCCTAACTGTGAACCAATGTTGGAATAGTGATGGTTGGAACTTGAATTTCTTGCATTCTGTGTTGGATGATGATATTATTTTTGAGATTGTTAGAATTCATGTTGGTTTTAATGGTGCAGGGATTGCAAAATGGCTAGAGGTATTTGGGGCAAAATTGTTTTCTCCAATTCAATTTCCAGAACTTGGTCTTTGGACTGGAATGGCTGGTTTCATGCTAATACTCACGTCTCAAGATGTTGAAAAAGTCCCTATCAGTTTAAGATGGTCTAAACGTCCTATAGGATGGATGAAACTAAATGTTGATGGTGCTAGAAGTCAGAATGGTTGTATTGGAGCTGGTGGTGTTTTGAGGGATCACAATGGCAATTGGGTTTTTGGTTTCACTGCTAGTCTGGGTAAAGGTTCTGTTATTGAAGCTGAGTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

389

Amino Acids

42.88

Weight (kDa)

9.18

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 116
AccB7I CCANNNNNTGG 1 cut(s) 923
AccI GTMKAC 1 cut(s) 385
AclWI GGATC 4 cut(s) 40, 697, 728, 1101
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 3 cut(s) 373, 784, 834
AfaI GTAC 1 cut(s) 586
AfiI CCNNNNNNNGG 1 cut(s) 923
AgsI TTSAA 9 cut(s) 338, 401, 414, 486, 709, 784, 911, 980, 1154
AjiI CACGTC 1 cut(s) 966
AjnI CCWGG 1 cut(s) 153
AluBI AGCT 7 cut(s) 92, 404, 443, 448, 481, 1076, 1157
AluI AGCT 7 cut(s) 92, 404, 443, 448, 481, 1076, 1157
Alw21I GWGCWC 1 cut(s) 103
Alw26I GTCTC 4 cut(s) 540, 627, 635, 972
AlwI GGATC 4 cut(s) 40, 697, 728, 1101
AoxI GGCC 1 cut(s) 151
ApoI RAATTY 3 cut(s) 373, 784, 834
AseI ATTAAT 1 cut(s) 663
AspS9I GGNCC 3 cut(s) 38, 601, 695
AsuHPI GGTGA 1 cut(s) 515
AvaII GGWCC 3 cut(s) 38, 601, 695
BalI TGGCCA 1 cut(s) 153
BbsI GAAGAC 2 cut(s) 127, 314
Bbv12I GWGCWC 1 cut(s) 103
BccI CCATC 6 cut(s) 205, 644, 764, 996, 1017, 1037
BciT130I CCWGG 1 cut(s) 155
BcoDI GTCTC 4 cut(s) 540, 627, 635, 972
BfaI CTAG 8 cut(s) 201, 216, 552, 573, 582, 875, 1050, 1128
BfmI CTRYAG 1 cut(s) 1017
BlpI GCTNAGC 1 cut(s) 444
BmcAI AGTACT 1 cut(s) 586
Bme1390I CCNGG 1 cut(s) 155
Bme18I GGWCC 3 cut(s) 38, 601, 695
BmgBI CACGTC 1 cut(s) 966
BmgT120I GGNCC 3 cut(s) 38, 601, 695
BmrFI CCNGG 1 cut(s) 155
BpiI GAAGAC 2 cut(s) 127, 314
Bpu1102I GCTNAGC 1 cut(s) 444
BpuEI CTTGAG 3 cut(s) 87, 609, 954
BsaI GGTCTC 1 cut(s) 635
BsaJI CCNNGG 1 cut(s) 604
Bsc4I CCNNNNNNNGG 1 cut(s) 923
Bse1I ACTGG 3 cut(s) 17, 452, 940
BseBI CCWGG 1 cut(s) 155
BseDI CCNNGG 1 cut(s) 604
BseGI GGATG 4 cut(s) 655, 811, 1028, 1032
BseLI CCNNNNNNNGG 1 cut(s) 923
BseMII CTCAG 1 cut(s) 1149
BseNI ACTGG 3 cut(s) 17, 452, 940
BseRI GAGGAG 1 cut(s) 609
BsgI GTGCAG 1 cut(s) 876
BshFI GGCC 1 cut(s) 153
BsiHKAI GWGCWC 1 cut(s) 103
BslFI GGGAC 1 cut(s) 971
BslI CCNNNNNNNGG 1 cut(s) 923
BsmAI GTCTC 4 cut(s) 540, 627, 635, 972
BsmBI CGTCTC 1 cut(s) 972
BsmFI GGGAC 1 cut(s) 971
BsmI GAATGC 2 cut(s) 282, 793
BsnI GGCC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 635
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 4 cut(s) 32, 689, 733, 1093
Bsp1720I GCTNAGC 1 cut(s) 444
Bsp19I CCATGG 1 cut(s) 604
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 1150
BspPI GGATC 4 cut(s) 40, 697, 728, 1101
BspTNI GGTCTC 1 cut(s) 635
BsrI ACTGG 3 cut(s) 17, 452, 940
BssECI CCNNGG 1 cut(s) 604
BssMI GATC 4 cut(s) 32, 689, 733, 1093
BssT1I CCWWGG 1 cut(s) 604
Bst2UI CCWGG 1 cut(s) 155
Bst4CI ACNGT 2 cut(s) 298, 748
BstAPI GCANNNNNTGC 1 cut(s) 863
BstDEI CTNAG 4 cut(s) 127, 303, 444, 1158
BstDSI CCRYGG 1 cut(s) 604
BstF5I GGATG 4 cut(s) 655, 811, 1028, 1032
BstKTI GATC 4 cut(s) 35, 692, 736, 1096
BstMAI GTCTC 4 cut(s) 540, 627, 635, 972
BstMBI GATC 4 cut(s) 32, 689, 733, 1093
BstMWI GCNNNNNNNGC 2 cut(s) 98, 863
BstNI CCWGG 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 153
BstSFI CTRYAG 1 cut(s) 1017
BstV2I GAAGAC 2 cut(s) 127, 314
BstX2I RGATCY 3 cut(s) 32, 689, 733
BstYI RGATCY 3 cut(s) 32, 689, 733
BsuRI GGCC 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 604
BtrI CACGTC 1 cut(s) 966
BtsCI GGATG 4 cut(s) 655, 811, 1028, 1032
BtsI GCAGTG 1 cut(s) 1122
BtsIMutI CAGTG 2 cut(s) 294, 1122
Cfr13I GGNCC 3 cut(s) 38, 601, 695
Csp6I GTAC 1 cut(s) 585
CviAII CATG 5 cut(s) 178, 564, 605, 839, 952
CviQI GTAC 1 cut(s) 585
DdeI CTNAG 4 cut(s) 127, 303, 444, 1158
DpnI GATC 4 cut(s) 34, 691, 735, 1095
DpnII GATC 4 cut(s) 32, 689, 733, 1093
EaeI YGGCCR 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 604
Eco31I GGTCTC 1 cut(s) 635
Eco47I GGWCC 3 cut(s) 38, 601, 695
EcoRI GAATTC 1 cut(s) 834
EcoRII CCWGG 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 604
ErhI CCWWGG 1 cut(s) 604
Esp3I CGTCTC 1 cut(s) 972
FaeI CATG 5 cut(s) 181, 567, 608, 842, 955
FalI AAGNNNNNCTT 2 cut(s) 110, 142
FaqI GGGAC 1 cut(s) 971
FatI CATG 5 cut(s) 177, 563, 604, 838, 951
FblI GTMKAC 1 cut(s) 385
FokI GGATG 4 cut(s) 662, 818, 1035, 1039
FspBI CTAG 8 cut(s) 201, 216, 552, 573, 582, 875, 1050, 1128
HaeIII GGCC 1 cut(s) 153
Hin1II CATG 5 cut(s) 181, 567, 608, 842, 955
HincII GTYRAC 1 cut(s) 386
HindII GTYRAC 1 cut(s) 386
HindIII AAGCTT 2 cut(s) 446, 479
HinfI GANTC 3 cut(s) 387, 467, 719
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 2 cut(s) 386, 751
Hpy188I TCNGA 1 cut(s) 1059
Hpy188III TCNNGA 2 cut(s) 917, 971
Hpy8I GTNNAC 2 cut(s) 386, 751
HpyAV CCTTC 1 cut(s) 579
HpyCH4III ACNGT 2 cut(s) 298, 748
HpyCH4IV ACGT 2 cut(s) 965, 1012
HpyCH4V TGCA 8 cut(s) 65, 86, 436, 458, 660, 793, 857, 866
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 863
HpyF3I CTNAG 4 cut(s) 127, 303, 444, 1158
HpySE526I ACGT 2 cut(s) 965, 1012
Hsp92II CATG 5 cut(s) 181, 567, 608, 842, 955
Kzo9I GATC 4 cut(s) 32, 689, 733, 1093
LmnI GCTCC 1 cut(s) 1073
MaeI CTAG 8 cut(s) 201, 216, 552, 573, 582, 875, 1050, 1128
MaeII ACGT 2 cut(s) 965, 1012
MaeIII GTNAC 3 cut(s) 298, 406, 712
MalI GATC 4 cut(s) 34, 691, 735, 1095
MboI GATC 4 cut(s) 32, 689, 733, 1093
MboII GAAGA 5 cut(s) 127, 220, 319, 529, 532
MfeI CAATTG 1 cut(s) 1105
MflI RGATCY 3 cut(s) 32, 689, 733
MhlI GDGCHC 1 cut(s) 103
MlsI TGGCCA 1 cut(s) 153
MluNI TGGCCA 1 cut(s) 153
MlyI GAGTC 2 cut(s) 381, 713
MmeI TCCRAC 4 cut(s) 335, 740, 755, 783
MnlI CCTC 8 cut(s) 51, 151, 291, 587, 633, 708, 871, 1083
Mox20I TGGCCA 1 cut(s) 153
MscI TGGCCA 1 cut(s) 153
MseI TTAA 6 cut(s) 21, 74, 612, 663, 849, 998
Msp20I TGGCCA 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 155
MunI CAATTG 1 cut(s) 1105
Mva1269I GAATGC 2 cut(s) 282, 793
MvaI CCWGG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 98, 863
NcoI CCATGG 1 cut(s) 604
NdeII GATC 4 cut(s) 32, 689, 733, 1093
NlaIII CATG 5 cut(s) 181, 567, 608, 842, 955
NmuCI GTSAC 2 cut(s) 298, 712
PctI GAATGC 2 cut(s) 282, 793
PfeI GAWTC 1 cut(s) 467
PflMI CCANNNNNTGG 1 cut(s) 923
PleI GAGTC 2 cut(s) 381, 713
PpsI GAGTC 2 cut(s) 381, 713
PshBI ATTAAT 1 cut(s) 663
PsiI TTATAA 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 153
PspPI GGNCC 3 cut(s) 38, 601, 695
PsuI RGATCY 3 cut(s) 32, 689, 733
RsaI GTAC 1 cut(s) 586
RsaNI GTAC 1 cut(s) 585
SalI GTCGAC 1 cut(s) 384
SaqAI TTAA 6 cut(s) 21, 74, 612, 663, 849, 998
Sau3AI GATC 4 cut(s) 32, 689, 733, 1093
Sau96I GGNCC 3 cut(s) 38, 601, 695
ScaI AGTACT 1 cut(s) 586
SchI GAGTC 2 cut(s) 381, 713
ScrFI CCNGG 1 cut(s) 155
SduI GDGCHC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 1017
SinI GGWCC 3 cut(s) 38, 601, 695
SmlI CTYRAG 3 cut(s) 102, 624, 969
SmoI CTYRAG 3 cut(s) 102, 624, 969
SspMI CTAG 8 cut(s) 201, 216, 552, 573, 582, 875, 1050, 1128
StyD4I CCNGG 1 cut(s) 153
StyI CCWWGG 1 cut(s) 604
TaaI ACNGT 2 cut(s) 298, 748
TaiI ACGT 2 cut(s) 968, 1015
TaqI TCGA 2 cut(s) 385, 722
TatI WGTACW 1 cut(s) 584
TfiI GAWTC 1 cut(s) 467
Tru1I TTAA 6 cut(s) 21, 74, 612, 663, 849, 998
Tru9I TTAA 6 cut(s) 21, 74, 612, 663, 849, 998
TscAI CASTG 2 cut(s) 301, 1129
TseFI GTSAC 2 cut(s) 298, 712
Tsp45I GTSAC 2 cut(s) 298, 712
TspDTI ATGAA 4 cut(s) 278, 827, 940, 1043
TspRI CASTG 2 cut(s) 301, 1129
Van91I CCANNNNNTGG 1 cut(s) 923
VpaK11BI GGWCC 3 cut(s) 38, 601, 695
VspI ATTAAT 1 cut(s) 663
XapI RAATTY 3 cut(s) 373, 784, 834
XmiI GTMKAC 1 cut(s) 385
XspI CTAG 8 cut(s) 201, 216, 552, 573, 582, 875, 1050, 1128
ZrmI AGTACT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.