Rmu_sc0010108.1_g000001

acid phosphatase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010108.1
OG0001772
Physical Location & Seq
Forward (+)
1 .. 4277
4277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010108.1_g000001.1.cds

Sequence Viewer

Length: 1103 bp
atgatttgatattattctccgaagctacttgtaatcaagctagagttttaaagaagtgcgttgatttgttctgtgagctctttggtcaagaagtgagttataataaatctgtgcttttttgttctcctaatactgataagatgcttgctagaaatatcagtgccatttgtggttatgctcttactaccaacctcggcaaatacttagggatgcctctgctgcactctcgagtcaccaagcacacttatgcctccatcatcgataaggttcagggtcgattggctggttggaaaggtaaattgttaaatcttgcgggtagaacaactctaattaattctgttatctctaccatgtctgtttatgctatgcagactgttaagattcccacttctgtttgtgatactattgagaaaatgagcagagattttctttgggaagataatgatggcagtaggaaggttcaccttgctaattgggacttagtttgtaaaccaaggaggtttggtggattggggaataaaaatattagacacatgaaccaagctatgcttgccaaggtgggatggaggatttttcaaaacgatgaaggattatggagcatggttttacatcagaaatatgtgaaagatattcctctgttgcactctgaaaatggttgttcttctagaagttctagtacttggaggagtatagttcatggagtcagattattaaaggaaggtttagtttggagaattggtgatgggagtttagccaatttctggaatgacaaatgggttactgatggaccacttctactacatactctgagtcgggctactgtcaatgattgtctgagagtcaaagattgttggaatgctggtgaatgggatataaatttccttaaaattcacttctgtgatgatattgtcaacataattgttagaattcctccaagttttcaaggttgtggtcaagtcaaaatgatttggggaggaacaagtaatggccattttactggttttatgctaaccttggttgcggttctgtccttcaagcggaagcttggggattacttttgggactacaaatggctctctctcgtcattgccatcatcttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C2 DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

366

Amino Acids

41.51

Weight (kDa)

9.27

Isoelectric Point (pI)

30.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 761
AciI CCGC 3 cut(s) 313, 1021, 1038
AcoI YGGCCR 1 cut(s) 987
AcsI RAATTY 3 cut(s) 876, 887, 926
AfaI GTAC 1 cut(s) 678
AfiI CCNNNNNNNGG 2 cut(s) 761, 1037
AgsI TTSAA 3 cut(s) 577, 943, 1035
AleI CACNNNNGTG 1 cut(s) 896
AluBI AGCT 5 cut(s) 25, 40, 78, 544, 1044
AluI AGCT 5 cut(s) 25, 40, 78, 544, 1044
Alw21I GWGCWC 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 227
AoxI GGCC 1 cut(s) 987
ApeKI GCWGC 1 cut(s) 219
ApoI RAATTY 3 cut(s) 876, 887, 926
AseI ATTAAT 1 cut(s) 332
AspS9I GGNCC 1 cut(s) 787
AsuHPI GGTGA 4 cut(s) 225, 454, 751, 874
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 1 cut(s) 787
BalI TGGCCA 1 cut(s) 989
BanII GRGCYC 1 cut(s) 80
BarI GAAGNNNNNNTAC 2 cut(s) 660, 692
Bbv12I GWGCWC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 206
BccI CCATC 6 cut(s) 262, 439, 557, 736, 778, 1099
BfaI CTAG 5 cut(s) 41, 149, 665, 674, 1101
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
BmcAI AGTACT 1 cut(s) 678
Bme18I GGWCC 1 cut(s) 787
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 787
BmsI GCATC 2 cut(s) 131, 200
Bsa29I ATCGAT 1 cut(s) 260
BsaJI CCNNGG 4 cut(s) 192, 493, 554, 1013
BsaXI ACNNNNNCTCC 4 cut(s) 489, 519, 723, 753
Bsc4I CCNNNNNNNGG 2 cut(s) 761, 1037
Bse1I ACTGG 1 cut(s) 1002
Bse3DI GCAATG 1 cut(s) 1085
BseCI ATCGAT 1 cut(s) 260
BseDI CCNNGG 4 cut(s) 192, 493, 554, 1013
BseGI GGATG 2 cut(s) 215, 568
BseLI CCNNNNNNNGG 2 cut(s) 761, 1037
BseMI GCAATG 1 cut(s) 1085
BseMII CTCAG 2 cut(s) 799, 826
BseNI ACTGG 1 cut(s) 1002
BseRI GAGGAG 1 cut(s) 699
BseXI GCAGC 1 cut(s) 206
BsgI GTGCAG 1 cut(s) 205
BshFI GGCC 1 cut(s) 989
BshVI ATCGAT 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 80
BsiHKCI CYCGRG 1 cut(s) 227
BslFI GGGAC 2 cut(s) 490, 1075
BslI CCNNNNNNNGG 2 cut(s) 761, 1037
BsmFI GGGAC 2 cut(s) 490, 1075
BsmI GAATGC 1 cut(s) 861
BsnI GGCC 1 cut(s) 989
BsoBI CYCGRG 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 80
BspACI CCGC 3 cut(s) 313, 1021, 1038
BspANI GGCC 1 cut(s) 989
BspCNI CTCAG 2 cut(s) 800, 827
BspDI ATCGAT 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 1085
BsrI ACTGG 1 cut(s) 1002
BssECI CCNNGG 4 cut(s) 192, 493, 554, 1013
BssT1I CCWWGG 3 cut(s) 493, 554, 1013
Bst4CI ACNGT 2 cut(s) 375, 822
BstC8I GCNNGC 2 cut(s) 146, 551
BstDEI CTNAG 4 cut(s) 204, 480, 808, 835
BstF5I GGATG 2 cut(s) 215, 568
BstMWI GCNNNNNNNGC 2 cut(s) 219, 550
BstV1I GCAGC 1 cut(s) 206
BstXI CCANNNNNNTGG 1 cut(s) 997
Bsu15I ATCGAT 1 cut(s) 260
BsuRI GGCC 1 cut(s) 989
BsuTUI ATCGAT 1 cut(s) 260
BtsCI GGATG 2 cut(s) 215, 568
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 2 cut(s) 146, 551
Cfr13I GGNCC 1 cut(s) 787
ClaI ATCGAT 1 cut(s) 260
Csp6I GTAC 1 cut(s) 677
CviAII CATG 4 cut(s) 351, 534, 600, 697
CviQI GTAC 1 cut(s) 677
DdeI CTNAG 4 cut(s) 204, 480, 808, 835
DraI TTTAAA 1 cut(s) 50
EaeI YGGCCR 1 cut(s) 987
Ecl136II GAGCTC 1 cut(s) 78
Eco130I CCWWGG 3 cut(s) 493, 554, 1013
Eco24I GRGCYC 1 cut(s) 80
Eco47I GGWCC 1 cut(s) 787
Eco53kI GAGCTC 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 78
EcoRI GAATTC 1 cut(s) 926
EcoT14I CCWWGG 3 cut(s) 493, 554, 1013
EcoT38I GRGCYC 1 cut(s) 80
ErhI CCWWGG 3 cut(s) 493, 554, 1013
FaeI CATG 4 cut(s) 354, 537, 603, 700
FalI AAGNNNNNCTT 2 cut(s) 533, 565
FaqI GGGAC 2 cut(s) 490, 1075
FatI CATG 4 cut(s) 350, 533, 599, 696
FauI CCCGC 1 cut(s) 306
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 2 cut(s) 222, 575
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 220
FspBI CTAG 5 cut(s) 41, 149, 665, 674, 1101
GluI GCNGC 1 cut(s) 220
HaeIII GGCC 1 cut(s) 989
Hin1II CATG 4 cut(s) 354, 537, 603, 700
HincII GTYRAC 1 cut(s) 912
HindII GTYRAC 1 cut(s) 912
HindIII AAGCTT 1 cut(s) 1042
HinfI GANTC 5 cut(s) 230, 381, 701, 810, 839
HphI GGTGA 4 cut(s) 225, 454, 751, 874
Hpy166II GTNNAC 3 cut(s) 462, 490, 912
Hpy188I TCNGA 6 cut(s) 21, 614, 648, 706, 809, 836
Hpy188III TCNNGA 4 cut(s) 88, 227, 665, 762
Hpy8I GTNNAC 3 cut(s) 462, 490, 912
HpyAV CCTTC 4 cut(s) 450, 580, 712, 1041
HpyCH4III ACNGT 2 cut(s) 375, 822
HpyCH4V TGCA 3 cut(s) 222, 369, 642
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 550
HpyF3I CTNAG 4 cut(s) 204, 480, 808, 835
Hsp92II CATG 4 cut(s) 354, 537, 603, 700
LmnI GCTCC 1 cut(s) 596
LpnPI CCDG 5 cut(s) 256, 269, 747, 845, 983
Lsp1109I GCAGC 1 cut(s) 206
LweI GCATC 2 cut(s) 131, 200
MaeI CTAG 5 cut(s) 41, 149, 665, 674, 1101
MaeIII GTNAC 2 cut(s) 231, 777
MboII GAAGA 3 cut(s) 448, 653, 1089
MhlI GDGCHC 1 cut(s) 80
MlsI TGGCCA 1 cut(s) 989
MluNI TGGCCA 1 cut(s) 989
MlyI GAGTC 4 cut(s) 239, 710, 819, 848
MmeI TCCRAC 2 cut(s) 268, 832
MnlI CCTC 9 cut(s) 202, 224, 261, 491, 560, 644, 677, 941, 967
Mox20I TGGCCA 1 cut(s) 989
MscI TGGCCA 1 cut(s) 989
MseI TTAA 6 cut(s) 49, 304, 332, 377, 712, 884
MslI CAYNNNNRTG 2 cut(s) 245, 896
Msp20I TGGCCA 1 cut(s) 989
Mva1269I GAATGC 1 cut(s) 861
MwoI GCNNNNNNNGC 2 cut(s) 219, 550
NlaIII CATG 4 cut(s) 354, 537, 603, 700
NmeAIII GCCGAG 1 cut(s) 173
NmuCI GTSAC 1 cut(s) 231
OliI CACNNNNGTG 1 cut(s) 896
PaeR7I CTCGAG 1 cut(s) 227
PctI GAATGC 1 cut(s) 861
PfeI GAWTC 1 cut(s) 381
PflMI CCANNNNNTGG 1 cut(s) 761
PkrI GCNGC 1 cut(s) 221
PleI GAGTC 4 cut(s) 238, 709, 818, 847
PpsI GAGTC 4 cut(s) 238, 709, 818, 847
PshBI ATTAAT 1 cut(s) 332
PsiI TTATAA 1 cut(s) 101
Psp124BI GAGCTC 1 cut(s) 80
PspPI GGNCC 1 cut(s) 787
RsaI GTAC 1 cut(s) 678
RsaNI GTAC 1 cut(s) 677
RseI CAYNNNNRTG 2 cut(s) 245, 896
SacI GAGCTC 1 cut(s) 80
SaqAI TTAA 6 cut(s) 49, 304, 332, 377, 712, 884
SatI GCNGC 1 cut(s) 220
Sau96I GGNCC 1 cut(s) 787
ScaI AGTACT 1 cut(s) 678
SchI GAGTC 4 cut(s) 239, 710, 819, 848
SduI GDGCHC 1 cut(s) 80
SfaNI GCATC 2 cut(s) 131, 200
Sfr274I CTCGAG 1 cut(s) 227
SinI GGWCC 1 cut(s) 787
SlaI CTCGAG 1 cut(s) 227
SmiMI CAYNNNNRTG 2 cut(s) 245, 896
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SsiI CCGC 3 cut(s) 313, 1021, 1038
SspI AATATT 1 cut(s) 525
SspMI CTAG 5 cut(s) 41, 149, 665, 674, 1101
SstI GAGCTC 1 cut(s) 80
StyI CCWWGG 3 cut(s) 493, 554, 1013
TaaI ACNGT 2 cut(s) 375, 822
TaqI TCGA 3 cut(s) 228, 260, 276
TatI WGTACW 1 cut(s) 676
TfiI GAWTC 1 cut(s) 381
Tru1I TTAA 6 cut(s) 49, 304, 332, 377, 712, 884
Tru9I TTAA 6 cut(s) 49, 304, 332, 377, 712, 884
TscAI CASTG 1 cut(s) 165
TseFI GTSAC 1 cut(s) 231
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 231
TspDTI ATGAA 3 cut(s) 550, 599, 685
TspRI CASTG 1 cut(s) 165
Van91I CCANNNNNTGG 1 cut(s) 761
VpaK11BI GGWCC 1 cut(s) 787
VspI ATTAAT 1 cut(s) 332
XapI RAATTY 3 cut(s) 876, 887, 926
XbaI TCTAGA 1 cut(s) 664
XhoI CTCGAG 1 cut(s) 227
XspI CTAG 5 cut(s) 41, 149, 665, 674, 1101
ZrmI AGTACT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.