Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033849.1

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1595

Gene Structure 1595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033849.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

tggaaagtccatcttctcaactggaatgctatgtgtaaacctaagagtgatggtagtctagggattaagacatctgcaagcatgaatcaagctatgcttgctaaagccaactggaggattttacagggtgataaaggtttatggtgcagaatttacaaggacaagtacttgcgtaatgcatcgctgttgtctcttacatatgaaaagcctaagaattgctctagtacttggtctagtgtagtctttggtgctaatttattgaagcttggtcttcgctggagagtgggaagtggaactcaaattaacttctggaatgacagttggtctacagctggagcccttagacatttcgttacggacactaaccttattaatgatagtgctactgttgatgattttttgcaggatggtcattggaatattgatttgctcaaaacttgtctttcgtctcaaattattgataccatcacttgtattcctgtgtccatagagttctcaaatgataaactcatttggggtggtactaccaatggtgttttctcagtgaattgttggttcatatggaaatggaggagtaaaagaatctttgaaccatcttttcatatcccttacaatatccctgatgttgtcctgagctatgcaacagattggaaaaatgcaacttgtaaaattgcaactcagaaaactaaacagatagagatgatctcaaggtgtaaacctggcttaggtttctttaagctaaatgtggatggttccaggtcttctaatgttcagctgctccaatctgatgctattgagttgcatcctcttggtactatcctcatgaattgcaagctgttaatgaaccaatttgatacctgccagatgaggcatatccacagagaaggtaatatggttgctgatatccttgctaaagaaagtattcttcactctgctggcctttgtactttcaattctcctcatgctctagttgttgaagctatccttgatgatatcttgggtgttgttagacctagggaagttgttaacaatggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

345

Amino Acids

38.9

Weight (kDa)

8.91

Isoelectric Point (pI)

35.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	866
AccI	GTMKAC	1 cut(s)	326
AcsI	RAATTY	1 cut(s)	150
AfaI	GTAC	5 cut(s)	167, 226, 523, 814, 946
AfiI	CCNNNNNNNGG	2 cut(s)	114, 725
AgsI	TTSAA	4 cut(s)	262, 590, 952, 977
AhdI	GACNNNNNGTC	1 cut(s)	322
AjnI	CCWGG	2 cut(s)	718, 755
AjuI	GAANNNNNNNTTGG	2 cut(s)	521, 553
AluBI	AGCT	8 cut(s)	92, 265, 332, 636, 739, 775, 835, 980
AluI	AGCT	8 cut(s)	92, 265, 332, 636, 739, 775, 835, 980
Alw26I	GTCTC	2 cut(s)	195, 453
AoxI	GGCC	1 cut(s)	937
ApeKI	GCWGC	1 cut(s)	775
ApoI	RAATTY	1 cut(s)	150
AseI	ATTAAT	1 cut(s)	372
Asp700I	GAANNNNTTC	1 cut(s)	921
AspA2I	CCTAGG	1 cut(s)	1013
AsuHPI	GGTGA	1 cut(s)	140
AvrII	CCTAGG	1 cut(s)	1013
BanII	GRGCYC	1 cut(s)	340
BbsI	GAAGAC	2 cut(s)	263, 753
BbvI	GCAGC	1 cut(s)	762
BccI	CCATC	6 cut(s)	18, 44, 401, 473, 601, 743
BciT130I	CCWGG	2 cut(s)	720, 757
BcoDI	GTCTC	2 cut(s)	195, 453
BfaI	CTAG	5 cut(s)	59, 222, 234, 968, 1014
BfmI	CTRYAG	1 cut(s)	327
BfuAI	ACCTGC	1 cut(s)	866
BisI	GCNGC	1 cut(s)	776
BlnI	CCTAGG	1 cut(s)	1013
BlsI	GCNGC	1 cut(s)	777
BmcAI	AGTACT	2 cut(s)	167, 226
Bme1390I	CCNGG	2 cut(s)	720, 757
BmeRI	GACNNNNNGTC	1 cut(s)	322
BmiI	GGNNCC	2 cut(s)	337, 754
BmrFI	CCNGG	2 cut(s)	720, 757
BmsI	GCATC	3 cut(s)	188, 778, 811
BpiI	GAAGAC	2 cut(s)	263, 753
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
BpmI	CTGGAG	3 cut(s)	133, 298, 354
Bpu10I	CCTNAGC	2 cut(s)	632, 724
BpuEI	CTTGAG	1 cut(s)	691
BsaJI	CCNNGG	1 cut(s)	1013
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 725
Bse1I	ACTGG	2 cut(s)	26, 116
BseBI	CCWGG	2 cut(s)	720, 757
BseDI	CCNNGG	1 cut(s)	1013
BseGI	GGATG	3 cut(s)	412, 754, 802
BseLI	CCNNNNNNNGG	2 cut(s)	114, 725
BseMII	CTCAG	3 cut(s)	555, 623, 692
BseNI	ACTGG	2 cut(s)	26, 116
BseRI	GAGGAG	2 cut(s)	586, 948
BseXI	GCAGC	1 cut(s)	762
BsgI	GTGCAG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	939
BslI	CCNNNNNNNGG	2 cut(s)	114, 725
BsmAI	GTCTC	2 cut(s)	195, 453
BsmBI	CGTCTC	1 cut(s)	453
BsmI	GAATGC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	939
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	702
BspANI	GGCC	1 cut(s)	939
BspCNI	CTCAG	3 cut(s)	554, 624, 691
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	2 cut(s)	337, 754
BspMI	ACCTGC	1 cut(s)	866
BsrI	ACTGG	2 cut(s)	26, 116
BssECI	CCNNGG	1 cut(s)	1013
BssMI	GATC	1 cut(s)	702
BssT1I	CCWWGG	1 cut(s)	1013
Bst2UI	CCWGG	2 cut(s)	720, 757
Bst4CI	ACNGT	2 cut(s)	320, 388
BstC8I	GCNNGC	4 cut(s)	79, 99, 833, 937
BstDEI	CTNAG	7 cut(s)	42, 210, 341, 541, 632, 678, 724
BstENI	CCTNNNNNAGG	1 cut(s)	723
BstF5I	GGATG	3 cut(s)	412, 754, 802
BstKTI	GATC	1 cut(s)	705
BstMAI	GTCTC	2 cut(s)	195, 453
BstMBI	GATC	1 cut(s)	702
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNI	CCWGG	2 cut(s)	720, 757
BstSCI	CCNGG	2 cut(s)	718, 755
BstSFI	CTRYAG	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	762
BstV2I	GAAGAC	2 cut(s)	263, 753
BsuRI	GGCC	1 cut(s)	939
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	412, 754, 802
BtsIMutI	CAGTG	1 cut(s)	549
BveI	ACCTGC	1 cut(s)	866
Cac8I	GCNNGC	4 cut(s)	79, 99, 833, 937
CciI	TCATGA	1 cut(s)	822
Csp6I	GTAC	5 cut(s)	166, 225, 522, 813, 945
CviAII	CATG	3 cut(s)	82, 823, 962
CviQI	GTAC	5 cut(s)	166, 225, 522, 813, 945
DdeI	CTNAG	7 cut(s)	42, 210, 341, 541, 632, 678, 724
DpnI	GATC	1 cut(s)	704
DpnII	GATC	1 cut(s)	702
DriI	GACNNNNNGTC	1 cut(s)	322
Eam1105I	GACNNNNNGTC	1 cut(s)	322
Eco130I	CCWWGG	1 cut(s)	1013
Eco24I	GRGCYC	1 cut(s)	340
Eco32I	GATATC	2 cut(s)	904, 994
EcoNI	CCTNNNNNAGG	1 cut(s)	723
EcoRII	CCWGG	2 cut(s)	718, 755
EcoRV	GATATC	2 cut(s)	904, 994
EcoT14I	CCWWGG	1 cut(s)	1013
EcoT22I	ATGCAT	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	1013
Esp3I	CGTCTC	1 cut(s)	453
FaeI	CATG	3 cut(s)	85, 826, 965
FalI	AAGNNNNNCTT	5 cut(s)	29, 81, 113, 969, 1001
FatI	CATG	3 cut(s)	81, 822, 961
FauNDI	CATATG	2 cut(s)	199, 560
FblI	GTMKAC	1 cut(s)	326
Fnu4HI	GCNGC	1 cut(s)	776
FokI	GGATG	3 cut(s)	419, 761, 789
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	1 cut(s)	776
FspBI	CTAG	5 cut(s)	59, 222, 234, 968, 1014
GluI	GCNGC	1 cut(s)	776
GsuI	CTGGAG	3 cut(s)	133, 298, 354
HaeIII	GGCC	1 cut(s)	939
Hin1II	CATG	3 cut(s)	85, 826, 965
HincII	GTYRAC	1 cut(s)	1027
HindII	GTYRAC	1 cut(s)	1027
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	2 cut(s)	85, 582
HpaI	GTTAAC	1 cut(s)	1027
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	4 cut(s)	38, 327, 716, 1027
Hpy188I	TCNGA	2 cut(s)	681, 787
Hpy188III	TCNNGA	3 cut(s)	310, 631, 823
Hpy8I	GTNNAC	4 cut(s)	38, 327, 716, 1027
HpyAV	CCTTC	1 cut(s)	878
HpyCH4III	ACNGT	2 cut(s)	320, 388
HpyCH4V	TGCA	9 cut(s)	77, 147, 179, 403, 641, 659, 674, 802, 831
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	7 cut(s)	42, 210, 341, 541, 632, 678, 724
Hsp92II	CATG	3 cut(s)	85, 826, 965
KspAI	GTTAAC	1 cut(s)	1027
Kzo9I	GATC	1 cut(s)	702
LmnI	GCTCC	2 cut(s)	335, 783
Lsp1109I	GCAGC	1 cut(s)	762
LweI	GCATC	3 cut(s)	188, 778, 811
MaeI	CTAG	5 cut(s)	59, 222, 234, 968, 1014
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	1 cut(s)	704
MboI	GATC	1 cut(s)	702
MboII	GAAGA	4 cut(s)	5, 263, 753, 917
MhlI	GDGCHC	1 cut(s)	340
MnlI	CCTC	6 cut(s)	108, 564, 816, 830, 861, 969
Mph1103I	ATGCAT	1 cut(s)	181
MroXI	GAANNNNTTC	1 cut(s)	921
MseI	TTAA	6 cut(s)	66, 303, 372, 735, 839, 1026
MspA1I	CMGCKG	2 cut(s)	332, 775
MspR9I	CCNGG	2 cut(s)	720, 757
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	2 cut(s)	720, 757
MwoI	GCNNNNNNNGC	1 cut(s)	98
NdeI	CATATG	2 cut(s)	199, 560
NdeII	GATC	1 cut(s)	702
NlaIII	CATG	3 cut(s)	85, 826, 965
NlaIV	GGNNCC	2 cut(s)	337, 754
NsiI	ATGCAT	1 cut(s)	181
PagI	TCATGA	1 cut(s)	822
PctI	GAATGC	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	921
PfeI	GAWTC	2 cut(s)	85, 582
PkrI	GCNGC	1 cut(s)	777
PshBI	ATTAAT	1 cut(s)	372
Psp6I	CCWGG	2 cut(s)	718, 755
PspGI	CCWGG	2 cut(s)	718, 755
PspN4I	GGNNCC	2 cut(s)	337, 754
PvuII	CAGCTG	2 cut(s)	332, 775
RsaI	GTAC	5 cut(s)	167, 226, 523, 814, 946
RsaNI	GTAC	5 cut(s)	166, 225, 522, 813, 945
SaqAI	TTAA	6 cut(s)	66, 303, 372, 735, 839, 1026
SatI	GCNGC	1 cut(s)	776
Sau3AI	GATC	1 cut(s)	702
ScaI	AGTACT	2 cut(s)	167, 226
ScrFI	CCNGG	2 cut(s)	720, 757
SduI	GDGCHC	1 cut(s)	340
SfaNI	GCATC	3 cut(s)	188, 778, 811
SfcI	CTRYAG	1 cut(s)	327
SmlI	CTYRAG	1 cut(s)	706
SmoI	CTYRAG	1 cut(s)	706
SspI	AATATT	1 cut(s)	421
SspMI	CTAG	5 cut(s)	59, 222, 234, 968, 1014
StyD4I	CCNGG	2 cut(s)	718, 755
StyI	CCWWGG	1 cut(s)	1013
TaaI	ACNGT	2 cut(s)	320, 388
TatI	WGTACW	3 cut(s)	165, 224, 944
TfiI	GAWTC	2 cut(s)	85, 582
Tru1I	TTAA	6 cut(s)	66, 303, 372, 735, 839, 1026
Tru9I	TTAA	6 cut(s)	66, 303, 372, 735, 839, 1026
TscAI	CASTG	1 cut(s)	549
TseI	GCWGC	1 cut(s)	775
TspDTI	ATGAA	6 cut(s)	98, 216, 547, 590, 839, 857
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	1 cut(s)	549
VspI	ATTAAT	1 cut(s)	372
XagI	CCTNNNNNAGG	1 cut(s)	723
XapI	RAATTY	1 cut(s)	150
XmaJI	CCTAGG	1 cut(s)	1013
XmiI	GTMKAC	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	921
XspI	CTAG	5 cut(s)	59, 222, 234, 968, 1014
ZrmI	AGTACT	2 cut(s)	167, 226
Zsp2I	ATGCAT	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.