Rroxscaffold_7G00179230

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
18864669 .. 18865189
521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00179230.1

Sequence Viewer

Length: 348 bp
ATGGTGGTTCTACTCATTTCTGGACTGACAAGTGGTCTGATTTGGGTTACCTCTGAGATCGTTCATGCTATTGACCCTTCTATGGTTGATAAACATTTACTTGTGCAAGACTTCTGGATTGAGAATGCTTGGGATGCCATTATGCTTTATGCTTGCTTACCTTCTGAGATAATCAAAAGAATCCTCTGCCTTCCCATTTCAGTTTCAAGAAGCTCCCCTCCCCTGATAAAATCATATGGCAGCATACTCTTCATAAGCCTTCCCACCACCTTAGACCGTGTGGAGACTGAATCATCCACAACATGCCCAGCTTATTATTTTCGCCGGTTTAAAATTAGCCCCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.99

Weight (kDa)

6.71

Isoelectric Point (pI)

66.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 1 cut(s) 207
AhdI GACNNNNNGTC 1 cut(s) 33
AluBI AGCT 2 cut(s) 213, 311
AluI AGCT 2 cut(s) 213, 311
Alw26I GTCTC 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 278
BisI GCNGC 1 cut(s) 241
BlsI GCNGC 1 cut(s) 242
BmeRI GACNNNNNGTC 1 cut(s) 33
BmsI GCATC 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 82
Bse118I RCCGGY 1 cut(s) 324
BseGI GGATG 2 cut(s) 139, 293
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 2 cut(s) 45, 156
BseXI GCAGC 1 cut(s) 252
BseYI CCCAGC 1 cut(s) 307
BsiSI CCGG 1 cut(s) 325
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 278
BsmI GAATGC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 57
BspCNI CTCAG 2 cut(s) 46, 157
BsrFI RCCGGY 1 cut(s) 324
BssAI RCCGGY 1 cut(s) 324
BssMI GATC 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 3 cut(s) 54, 165, 271
BstEII GGTNACC 1 cut(s) 46
BstF5I GGATG 2 cut(s) 139, 293
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 306
BstPI GGTNACC 1 cut(s) 46
BstV1I GCAGC 1 cut(s) 252
BtsCI GGATG 2 cut(s) 139, 293
Cac8I GCNNGC 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 324
CviAII CATG 2 cut(s) 65, 303
CviJI RGCY 4 cut(s) 213, 258, 311, 339
CviKI_1 RGCY 4 cut(s) 213, 258, 311, 339
DdeI CTNAG 3 cut(s) 54, 165, 271
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
DraI TTTAAA 1 cut(s) 331
DriI GACNNNNNGTC 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 254
Eam1105I GACNNNNNGTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 254
Eco91I GGTNACC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 46
FaeI CATG 2 cut(s) 68, 306
FaiI YATR 9 cut(s) 66, 83, 143, 150, 235, 237, 245, 254, 304
FatI CATG 2 cut(s) 64, 302
FauNDI CATATG 1 cut(s) 235
Fnu4HI GCNGC 1 cut(s) 241
FokI GGATG 2 cut(s) 146, 280
Fsp4HI GCNGC 1 cut(s) 241
GluI GCNGC 1 cut(s) 241
GsaI CCCAGC 1 cut(s) 311
HapII CCGG 1 cut(s) 325
Hin1II CATG 2 cut(s) 68, 306
HinfI GANTC 2 cut(s) 180, 290
HpaII CCGG 1 cut(s) 325
Hpy188I TCNGA 3 cut(s) 39, 55, 166
Hpy188III TCNNGA 3 cut(s) 21, 115, 207
HpyAV CCTTC 4 cut(s) 87, 171, 200, 269
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 3 cut(s) 54, 165, 271
Hsp92II CATG 2 cut(s) 68, 306
Kzo9I GATC 1 cut(s) 57
LmnI GCTCC 1 cut(s) 218
LpnPI CCDG 5 cut(s) 6, 100, 236, 321, 338
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 1 cut(s) 241
MluCI AATT 1 cut(s) 333
MnlI CCTC 3 cut(s) 61, 194, 228
MseI TTAA 1 cut(s) 330
MspI CCGG 1 cut(s) 325
Mva1269I GAATGC 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeI CATATG 1 cut(s) 235
NdeII GATC 1 cut(s) 57
NlaIII CATG 2 cut(s) 68, 306
NspI RCATGY 1 cut(s) 306
PctI GAATGC 1 cut(s) 130
PfeI GAWTC 2 cut(s) 180, 290
PkrI GCNGC 1 cut(s) 242
PspEI GGTNACC 1 cut(s) 46
PspFI CCCAGC 1 cut(s) 307
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 1 cut(s) 241
Sau3AI GATC 1 cut(s) 57
SetI ASST 5 cut(s) 53, 163, 215, 272, 313
SfaNI GCATC 1 cut(s) 124
Sse9I AATT 1 cut(s) 333
TaaI ACNGT 1 cut(s) 278
TasI AATT 1 cut(s) 333
TfiI GAWTC 2 cut(s) 180, 290
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseI GCWGC 1 cut(s) 240
TspDTI ATGAA 2 cut(s) 53, 241
XceI RCATGY 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.