Rh5BG202500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001772
Physical Location & Seq
Forward (+)
22879245 .. 22880728
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG202500.1

Sequence Viewer

Length: 204 bp
ATGGTTGGTAAAGAGCTGATAGAGGGTGCTAGCTCATCTGGGGTAAGCAAAGATCTTATTACTGAAGATGGTAGTCCTAATGCAGACATGTTCATCAACGGCGGGTTGGATGGAGGGGAGAGTGAAGAGGGAGCGGTTAAGAGGAGTGAGGATTGGGCAGGGTTGACCCGGAGAACTTGGGTGAAGAGGTGCCCAGATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.13

Weight (kDa)

4.5

Isoelectric Point (pI)

64.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 189
AccBSI CCGCTC 1 cut(s) 134
AciI CCGC 2 cut(s) 102, 134
AcuI CTGAAG 1 cut(s) 84
AflIII ACRYGT 1 cut(s) 87
AluBI AGCT 2 cut(s) 16, 33
AluI AGCT 2 cut(s) 16, 33
AsuC2I CCSGG 1 cut(s) 169
AsuHPI GGTGA 1 cut(s) 193
AsuNHI GCTAGC 1 cut(s) 29
BaeGI GKGCMC 1 cut(s) 194
BanI GGYRCC 1 cut(s) 189
BccI CCATC 2 cut(s) 62, 104
BceAI ACGGC 1 cut(s) 115
BcnI CCSGG 1 cut(s) 169
BfaI CTAG 2 cut(s) 30, 202
BglII AGATCT 2 cut(s) 52, 196
Bme1390I CCNGG 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 169
BmtI GCTAGC 1 cut(s) 33
BpuMI CCSGG 1 cut(s) 169
BseGI GGATG 1 cut(s) 115
BseRI GAGGAG 1 cut(s) 157
BseSI GKGCMC 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 189
BsiSI CCGG 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 2 cut(s) 52, 196
BspACI CCGC 2 cut(s) 102, 134
BspLI GGNNCC 1 cut(s) 191
BspOI GCTAGC 1 cut(s) 33
BspT107I GGYRCC 1 cut(s) 189
BsrBI CCGCTC 1 cut(s) 134
BssMI GATC 2 cut(s) 52, 196
Bst6I CTCTTC 2 cut(s) 120, 179
BstC8I GCNNGC 1 cut(s) 31
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 2 cut(s) 55, 199
BstMBI GATC 2 cut(s) 52, 196
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 167
BstSLI GKGCMC 1 cut(s) 194
BstX2I RGATCY 2 cut(s) 52, 196
BstYI RGATCY 2 cut(s) 52, 196
BtsCI GGATG 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 31
CviAII CATG 1 cut(s) 88
CviJI RGCY 2 cut(s) 16, 33
CviKI_1 RGCY 2 cut(s) 16, 33
DpnI GATC 2 cut(s) 54, 198
DpnII GATC 2 cut(s) 52, 196
Eam1104I CTCTTC 2 cut(s) 120, 179
EarI CTCTTC 2 cut(s) 120, 179
Eco57I CTGAAG 1 cut(s) 84
FaeI CATG 1 cut(s) 91
FaiI YATR 1 cut(s) 89
FatI CATG 1 cut(s) 87
FauI CCCGC 1 cut(s) 95
FokI GGATG 1 cut(s) 122
FspBI CTAG 2 cut(s) 30, 202
HapII CCGG 1 cut(s) 169
Hin1II CATG 1 cut(s) 91
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HpaII CCGG 1 cut(s) 169
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 1 cut(s) 165
Hpy8I GTNNAC 1 cut(s) 165
HpyCH4V TGCA 1 cut(s) 83
Hsp92II CATG 1 cut(s) 91
Kzo9I GATC 2 cut(s) 52, 196
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 3 cut(s) 24, 144, 182
MaeI CTAG 2 cut(s) 30, 202
MalI GATC 2 cut(s) 54, 198
MbiI CCGCTC 1 cut(s) 134
MboI GATC 2 cut(s) 52, 196
MboII GAAGA 3 cut(s) 77, 137, 196
MflI RGATCY 2 cut(s) 52, 196
MhlI GDGCHC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 6 cut(s) 16, 107, 121, 135, 142, 180
MseI TTAA 1 cut(s) 138
MspI CCGG 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 169
NciI CCSGG 1 cut(s) 169
NdeII GATC 2 cut(s) 52, 196
NheI GCTAGC 1 cut(s) 29
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 191
NspI RCATGY 1 cut(s) 91
PciI ACATGT 1 cut(s) 87
PscI ACATGT 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 191
PsuI RGATCY 2 cut(s) 52, 196
SaqAI TTAA 1 cut(s) 138
Sau3AI GATC 2 cut(s) 52, 196
ScrFI CCNGG 1 cut(s) 169
SduI GDGCHC 1 cut(s) 194
SetI ASST 3 cut(s) 18, 35, 191
SgeI CNNG 8 cut(s) 42, 51, 100, 115, 171, 180, 181, 189
SsiI CCGC 2 cut(s) 102, 134
SspMI CTAG 2 cut(s) 30, 202
StyD4I CCNGG 1 cut(s) 167
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TspDTI ATGAA 1 cut(s) 82
XceI RCATGY 1 cut(s) 91
XspI CTAG 2 cut(s) 30, 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.