Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007977.1

Orthogroup ID

OG0001772

Physical Location & Seq

Genomic Coordinates Reverse (-)

85109 .. 86321

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007977.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgcctgtgtatgctatgcaaactgtgaaaattcctgcttctgtgtgtgatactttggaacaattaaacaggaattttctgtggggtgactacaatgatagcaagaaaattcatcttgccaattgggatttagtttgtagacccaagatatttggaggtctaggaataaaaaggattagacaaatgaatcaggcaatgctcgctaagattgggtggaggatgactcaaggtgatgggggtttgtggagcaaggttcttcatcaaaagtacgtaaaagacactcctcttctccatgctaattattcttgtccttctaggagctctagcacttggagaagtattctccatggtgttcaattgttgaagaaagggttaatctggcgaattggtgatggggctactgttaatttttggaatgacaattggacatctgatggacctttgcttcaaaacattgctgatacgactaatgtcaatcttgacaccaaagtttatgagtgttggagggatagggaatggaatttgaactttctcaagatgcattttagtgatgatgttattaatagaattgttaaaatacctgttggtttggagggttgtggtcctgatacgataatttggaagggtaccagtaatggtcacttcactgtgagatctgcttatcatattattttgaatgaagaacactttgaggagttcccttggaacaagaaggacgttggagtcgtcttctccaaatcaggaatgtcgttccgtcgagttgctgctgggatcactactccatcctttttgggtaagaatcccaagtctatacaaaagcctctcaactcccatcctccaaaatcctgccccaatttccgataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

287

Amino Acids

32.76

Weight (kDa)

9.55

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001772)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g04886 FvH4_2g12003 FvH4_5g27492
rosa_chinensis	RchiOBHm_Chr1g0382551 RchiOBHm_Chr1g0384551
rosa_laevigata	RLG00000002160
rosa_multiflora	Rmu_co8264107.1_g000001 Rmu_co8333359.1_g000001 Rmu_sc0000295.1_g000023 Rmu_sc0000657.1_g000002 Rmu_sc0000935.1_g000036 Rmu_sc0001150.1_g000003 Rmu_sc0001484.1_g000025 Rmu_sc0001512.1_g000020 Rmu_sc0001618.1_g000002 Rmu_sc0001809.1_g000022 Rmu_sc0002354.1_g000044 Rmu_sc0002522.1_g000061 Rmu_sc0004175.1_g000004 Rmu_sc0004200.1_g000003 Rmu_sc0004569.1_g000010 Rmu_sc0005950.1_g000002 Rmu_sc0006862.1_g000009 Rmu_sc0007977.1_g000017 Rmu_sc0008049.1_g000020 Rmu_sc0008752.1_g000003 Rmu_sc0009440.1_g000002 Rmu_sc0009969.1_g000003 Rmu_sc0010108.1_g000001 Rmu_sc0010822.1_g000003 Rmu_sc0010883.1_g000006 Rmu_sc0017237.1_g000001 Rmu_sc0018807.1_g000013 Rmu_sc0027036.1_g000002 Rmu_sc0033849.1_g000001 Rmu_ssc0000387.1_g000008
rosa_roxburghii	Rroxscaffold_2G00087680 Rroxscaffold_3G00224640 Rroxscaffold_7G00179230
rosa_rugosa	Rorug01G0040100 Rorug01G0390700 Rorug02G0557500 Rorug03G0004200 Rorug04G0040100 Rorug07G0095000 Rorug07G0277300
rosa_samantha	Rh5BG202500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	722
Acc65I	GGTACC	1 cut(s)	626
AccB1I	GGYRCC	1 cut(s)	626
AccI	GTMKAC	1 cut(s)	139
AclWI	GGATC	1 cut(s)	779
AcsI	RAATTY	4 cut(s)	30, 73, 108, 520
AfaI	GTAC	2 cut(s)	269, 628
AgsI	TTSAA	5 cut(s)	356, 364, 449, 526, 676
AluBI	AGCT	1 cut(s)	321
AluI	AGCT	1 cut(s)	321
Alw21I	GWGCWC	1 cut(s)	323
AlwI	GGATC	1 cut(s)	779
ApeKI	GCWGC	1 cut(s)	764
ApoI	RAATTY	4 cut(s)	30, 73, 108, 520
AseI	ATTAAT	1 cut(s)	561
Asp718I	GGTACC	1 cut(s)	626
AspS9I	GGNCC	2 cut(s)	437, 602
AsuHPI	GGTGA	3 cut(s)	98, 242, 401
AvaII	GGWCC	2 cut(s)	437, 602
BanI	GGYRCC	1 cut(s)	626
BanII	GRGCYC	1 cut(s)	323
BbsI	GAAGAC	1 cut(s)	721
Bbv12I	GWGCWC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	751
BccI	CCATC	5 cut(s)	227, 386, 428, 790, 840
BfaI	CTAG	3 cut(s)	161, 315, 324
BglII	AGATCT	1 cut(s)	653
BisI	GCNGC	1 cut(s)	765
BlsI	GCNGC	1 cut(s)	766
Bme18I	GGWCC	2 cut(s)	437, 602
BmgT120I	GGNCC	2 cut(s)	437, 602
BmiI	GGNNCC	1 cut(s)	628
BmsI	GCATC	1 cut(s)	528
BoxI	GACNNNNGTC	1 cut(s)	470
BpiI	GAAGAC	1 cut(s)	721
BplI	GAGNNNNNCTC	2 cut(s)	208, 240
BpuEI	CTTGAG	2 cut(s)	210, 518
BsaAI	YACGTR	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	346, 701
Bse1I	ACTGG	1 cut(s)	630
Bse3DI	GCAATG	2 cut(s)	201, 453
BseDI	CCNNGG	2 cut(s)	346, 701
BseGI	GGATG	3 cut(s)	225, 782, 832
BseMI	GCAATG	2 cut(s)	201, 453
BseNI	ACTGG	1 cut(s)	630
BseRI	GAGGAG	2 cut(s)	273, 707
BseXI	GCAGC	1 cut(s)	751
BseYI	CCCAGC	1 cut(s)	767
BshNI	GGYRCC	1 cut(s)	626
BsiHKAI	GWGCWC	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	2 cut(s)	653, 771
Bsp19I	CCATGG	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	628
BspPI	GGATC	1 cut(s)	779
BspT107I	GGYRCC	1 cut(s)	626
BsrDI	GCAATG	2 cut(s)	201, 453
BsrI	ACTGG	1 cut(s)	630
BssECI	CCNNGG	2 cut(s)	346, 701
BssMI	GATC	2 cut(s)	653, 771
BssT1I	CCWWGG	2 cut(s)	346, 701
Bst4CI	ACNGT	3 cut(s)	25, 403, 649
Bst6I	CTCTTC	1 cut(s)	291
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	204
BstDSI	CCRYGG	1 cut(s)	346
BstF5I	GGATG	3 cut(s)	225, 782, 832
BstKTI	GATC	2 cut(s)	656, 774
BstMBI	GATC	2 cut(s)	653, 771
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstPAI	GACNNNNGTC	1 cut(s)	470
BstSNI	TACGTA	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	751
BstV2I	GAAGAC	1 cut(s)	721
BstX2I	RGATCY	1 cut(s)	653
BstYI	RGATCY	1 cut(s)	653
BtgI	CCRYGG	1 cut(s)	346
BtsCI	GGATG	3 cut(s)	225, 782, 832
BtsIMutI	CAGTG	1 cut(s)	645
Cac8I	GCNNGC	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	437, 602
Csp6I	GTAC	2 cut(s)	268, 627
CviAII	CATG	2 cut(s)	293, 347
CviJI	RGCY	3 cut(s)	321, 398, 820
CviKI_1	RGCY	3 cut(s)	321, 398, 820
CviQI	GTAC	2 cut(s)	268, 627
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	2 cut(s)	655, 773
DpnII	GATC	2 cut(s)	653, 771
DrdI	GACNNNNNNGTC	1 cut(s)	722
DseDI	GACNNNNNNGTC	1 cut(s)	722
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	321
Eco105I	TACGTA	1 cut(s)	271
Eco130I	CCWWGG	2 cut(s)	346, 701
Eco24I	GRGCYC	1 cut(s)	323
Eco47I	GGWCC	2 cut(s)	437, 602
Eco53kI	GAGCTC	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	321
EcoT14I	CCWWGG	2 cut(s)	346, 701
EcoT22I	ATGCAT	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	323
ErhI	CCWWGG	2 cut(s)	346, 701
FaeI	CATG	2 cut(s)	296, 350
FaiI	YATR	7 cut(s)	12, 17, 294, 348, 495, 666, 812
FatI	CATG	2 cut(s)	292, 346
FblI	GTMKAC	1 cut(s)	139
Fnu4HI	GCNGC	1 cut(s)	765
FokI	GGATG	3 cut(s)	232, 769, 819
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	765
FspBI	CTAG	3 cut(s)	161, 315, 324
GluI	GCNGC	1 cut(s)	765
GsaI	CCCAGC	1 cut(s)	771
Hin1II	CATG	2 cut(s)	296, 350
HinfI	GANTC	4 cut(s)	187, 223, 723, 799
HphI	GGTGA	3 cut(s)	98, 242, 401
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	2 cut(s)	433, 860
Hpy188III	TCNNGA	4 cut(s)	479, 535, 605, 741
Hpy8I	GTNNAC	1 cut(s)	140
Hpy99I	CGWCG	1 cut(s)	759
HpyAV	CCTTC	3 cut(s)	321, 616, 706
HpyCH4III	ACNGT	3 cut(s)	25, 403, 649
HpyCH4IV	ACGT	2 cut(s)	270, 717
HpyCH4V	TGCA	2 cut(s)	19, 541
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	2 cut(s)	270, 717
Hsp92II	CATG	2 cut(s)	296, 350
KpnI	GGTACC	1 cut(s)	630
Kzo9I	GATC	2 cut(s)	653, 771
LmnI	GCTCC	2 cut(s)	246, 318
Lsp1109I	GCAGC	1 cut(s)	751
LweI	GCATC	1 cut(s)	528
MaeI	CTAG	3 cut(s)	161, 315, 324
MaeII	ACGT	2 cut(s)	270, 717
MaeIII	GTNAC	2 cut(s)	86, 638
MalI	GATC	2 cut(s)	655, 773
MboI	GATC	2 cut(s)	653, 771
MboII	GAAGA	5 cut(s)	248, 278, 376, 692, 721
MfeI	CAATTG	3 cut(s)	121, 356, 421
MflI	RGATCY	1 cut(s)	653
MhlI	GDGCHC	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	217, 732
MmeI	TCCRAC	2 cut(s)	482, 700
MnlI	CCTC	8 cut(s)	149, 210, 294, 498, 586, 685, 831, 846
Mph1103I	ATGCAT	1 cut(s)	543
MseI	TTAA	5 cut(s)	65, 374, 405, 561, 573
MslI	CAYNNNNRTG	1 cut(s)	546
MunI	CAATTG	3 cut(s)	121, 356, 421
MwoI	GCNNNNNNNGC	1 cut(s)	200
NcoI	CCATGG	1 cut(s)	346
NdeII	GATC	2 cut(s)	653, 771
NlaIII	CATG	2 cut(s)	296, 350
NlaIV	GGNNCC	1 cut(s)	628
NmuCI	GTSAC	2 cut(s)	86, 638
NsiI	ATGCAT	1 cut(s)	543
PcsI	WCGNNNNNNNCGW	1 cut(s)	723
PfeI	GAWTC	2 cut(s)	187, 799
PkrI	GCNGC	1 cut(s)	766
PleI	GAGTC	2 cut(s)	217, 731
PpsI	GAGTC	2 cut(s)	217, 731
Ppu21I	YACGTR	1 cut(s)	271
PshAI	GACNNNNGTC	1 cut(s)	470
PshBI	ATTAAT	1 cut(s)	561
Psp124BI	GAGCTC	1 cut(s)	323
PspFI	CCCAGC	1 cut(s)	767
PspN4I	GGNNCC	1 cut(s)	628
PspPI	GGNCC	2 cut(s)	437, 602
PsuI	RGATCY	1 cut(s)	653
RsaI	GTAC	2 cut(s)	269, 628
RsaNI	GTAC	2 cut(s)	268, 627
RseI	CAYNNNNRTG	1 cut(s)	546
SacI	GAGCTC	1 cut(s)	323
SaqAI	TTAA	5 cut(s)	65, 374, 405, 561, 573
SatI	GCNGC	1 cut(s)	765
Sau3AI	GATC	2 cut(s)	653, 771
Sau96I	GGNCC	2 cut(s)	437, 602
SchI	GAGTC	2 cut(s)	217, 732
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	8 cut(s)	160, 232, 255, 273, 323, 442, 583, 720
SfaNI	GCATC	1 cut(s)	528
SinI	GGWCC	2 cut(s)	437, 602
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	2 cut(s)	225, 533
SmoI	CTYRAG	2 cut(s)	225, 533
SnaBI	TACGTA	1 cut(s)	271
SspMI	CTAG	3 cut(s)	161, 315, 324
SstI	GAGCTC	1 cut(s)	323
StyI	CCWWGG	2 cut(s)	346, 701
TaaI	ACNGT	3 cut(s)	25, 403, 649
TaiI	ACGT	2 cut(s)	273, 720
TaqI	TCGA	1 cut(s)	757
TfiI	GAWTC	2 cut(s)	187, 799
Tru1I	TTAA	5 cut(s)	65, 374, 405, 561, 573
Tru9I	TTAA	5 cut(s)	65, 374, 405, 561, 573
TscAI	CASTG	1 cut(s)	652
TseFI	GTSAC	2 cut(s)	86, 638
TseI	GCWGC	1 cut(s)	764
Tsp45I	GTSAC	2 cut(s)	86, 638
TspDTI	ATGAA	4 cut(s)	101, 200, 248, 693
TspGWI	ACGGA	1 cut(s)	743
TspRI	CASTG	1 cut(s)	652
VpaK11BI	GGWCC	2 cut(s)	437, 602
VspI	ATTAAT	1 cut(s)	561
XapI	RAATTY	4 cut(s)	30, 73, 108, 520
XmiI	GTMKAC	1 cut(s)	139
XspI	CTAG	3 cut(s)	161, 315, 324
Zsp2I	ATGCAT	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.